mRNA_H-elongata_contig1592.3821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1592.3821.1
Unique NamemRNA_H-elongata_contig1592.3821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1592.3821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1592contigH-elongata_contig1592:12927..13531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1592.3821.1prot_H-elongata_contig1592.3821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1592 12927..13342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.784629-CDS-H-elongata_contig1592:12926..132431622929936.784629-CDS-H-elongata_contig1592:12926..13243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1592 12927..13243 +
1691679214.7584887-CDS-H-elongata_contig1592:12926..132431691679214.7584887-CDS-H-elongata_contig1592:12926..13243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1592 12927..13243 +
1622929936.804452-CDS-H-elongata_contig1592:13311..133421622929936.804452-CDS-H-elongata_contig1592:13311..13342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1592 13312..13342 +
1691679214.7670155-CDS-H-elongata_contig1592:13311..133421691679214.7670155-CDS-H-elongata_contig1592:13311..13342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1592 13312..13342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.8177657-UTR-H-elongata_contig1592:13342..135311622929936.8177657-UTR-H-elongata_contig1592:13342..13531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1592 13343..13531 +
1691679214.7754374-UTR-H-elongata_contig1592:13342..135311691679214.7754374-UTR-H-elongata_contig1592:13342..13531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1592 13343..13531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1592.3821.1

>prot_H-elongata_contig1592.3821.1 ID=prot_H-elongata_contig1592.3821.1|Name=mRNA_H-elongata_contig1592.3821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VSILIHIPVSVPVPVLIPITVLVPVPSRVPVSVLIHVLVSVSVLISSSPL
SFLPSRPWRQILLSIRHDRTGAAGSCTRNSRLYTNDSPCFPCSRRRFFLP
VPVDMTLTNERLSCM*
back to top

mRNA from alignment at H-elongata_contig1592:12927..13531+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1592.3821.1 ID=mRNA_H-elongata_contig1592.3821.1|Name=mRNA_H-elongata_contig1592.3821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=605bp|location=Sequence derived from alignment at H-elongata_contig1592:12927..13531+ (Himanthalia elongata Himel1 dioecious)
GTCTCCATCCTCATCCATATCCCCGTTTCCGTTCCCGTCCCTGTGCTTAT
CCCCATCACCGTACTCGTCCCCGTCCCCTCTCGAGTTCCCGTCTCCGTCC
TTATCCATGTCCTCGTATCCGTCTCCGTCCTCATATCCTCGTCCCCGTTA
TCGTTTCTTCCTTCCCGTCCCTGGCGTCAGATTCTCCTTTCGATACGACA
TGATCGGACAGGGGCCGCCGGATCTTGCACCCGAAACTCCCGGCTGTATA
CAAACGATTCCCCCTGTTTCCCCTGTTCCCGTCGCCGTTTCTTCCTTCCA
GTCCCTGTCGATATGACATGATCGGGCAGGCGCTGCGTCTTGCACCCGGA
TCTCCTGCTTATTATGTTGTCACGAAGATTCCGGGTCTTACGAATGAACG
TTTGAGCTGTATGTGAGGGTCACCCTCTATTTACAAAGATGATTTTGCGT
GCGGAAAGATAGCGCCTGATGTAAGACGAAAGAAATTCGGCGCTTAAGAC
GGGCTATATATGCCCCCTCCGCTAGACGCCGTGATTCCTCGGAGTGGAAC
TCGGAAATGTTCTTCACCCGTCTGATGGCTAGCTCCTTGATGAAGGCATG
TACTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1592:12927..13531+

>mRNA_H-elongata_contig1592.3821.1 ID=mRNA_H-elongata_contig1592.3821.1|Name=mRNA_H-elongata_contig1592.3821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig1592:12927..13531+ (Himanthalia elongata Himel1 dioecious)
GTCTCCATCCTCATCCATATCCCCGTTTCCGTTCCCGTCCCTGTGCTTAT
CCCCATCACCGTACTCGTCCCCGTCCCCTCTCGAGTTCCCGTCTCCGTCC
TTATCCATGTCCTCGTATCCGTCTCCGTCCTCATATCCTCGTCCCCGTTA
TCGTTTCTTCCTTCCCGTCCCTGGCGTCAGATTCTCCTTTCGATACGACA
TGATCGGACAGGGGCCGCCGGATCTTGCACCCGAAACTCCCGGCTGTATA
CAAACGATTCCCCCTGTTTCCCCTGTTCCCGTCGCCGTTTCTTCCTTCCA
GTCCCTGTCGATATGACGTCTCCATCCTCATCCATATCCCCGTTTCCGTT
CCCGTCCCTGTGCTTATCCCCATCACCGTACTCGTCCCCGTCCCCTCTCG
AGTTCCCGTCTCCGTCCTTATCCATGTCCTCGTATCCGTCTCCGTCCTCA
TATCCTCGTCCCCGTTATCGTTTCTTCCTTCCCGTCCCTGGCGTCAGATT
CTCCTTTCGATACGACATGATCGGACAGGGGCCGCCGGATCTTGCACCCG
AAACTCCCGGCTGTATACAAACGATTCCCCCTGTTTCCCCTGTTCCCGTC
GCCGTTTCTTCCTTCCAGTCCCTGTCGATATGACTCTTACGAATGAACGT
TTGAGCTGTATGTGATCTTACGAATGAACGTTTGAGCTGTATGTGA
back to top