mRNA_H-elongata_contig1592.3820.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A1X7SFP1_AMPQE (Herpes_Helicase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFP1_AMPQE) HSP 1 Score: 67.8 bits (164), Expect = 1.180e-9 Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query: 1136 VPIAAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLLW 1360
VPI +WS +GG Q SR QLPL L WA+T+ KSQG +DK+V+D+GK + GL FV SR ++ +L+
Sbjct: 62 VPITPIRHNWSSSGG---QCSRLQLPLKLAWAVTIHKSQGLTLDKVVIDVGKKEFSCGLTFVACSRVRKLKDILF 133
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A1X7VQQ4_AMPQE (ATP-dependent DNA helicase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQQ4_AMPQE) HSP 1 Score: 67.8 bits (164), Expect = 3.130e-9 Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query: 1136 VPIAAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLLW 1360
VPI +WS +GG Q SR QLPL L WA+T+ KSQG +DK+V+D+GK + GL FV SR ++ +L+
Sbjct: 98 VPITPIRHNWSSSGG---QCSRLQLPLKLAWAVTIHKSQGLTLDKVVIDVGKKEFSCGLTFVACSRVRKLKDILF 169
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A0C9VD11_SPHS4 (Herpes_Helicase domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VD11_SPHS4) HSP 1 Score: 66.6 bits (161), Expect = 4.110e-9 Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 2
Query: 1073 GYQVKRVHRPSAVWRPAI*SGVPIAAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGL 1354
GY +H P W S P+ W G +R QLPL L WAIT+ KSQG ++++V++LG + GL+FV +SR KR GL
Sbjct: 45 GYSESGIHTPG--WPAVDPSWAPVVPVTARWE--SKTGKSLARSQLPLTLAWAITIHKSQGLTLERVVIELGLKEFSLGLSFVAMSRVKRLSGL 134
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A7J6WG84_THATH (ATP-dependent DNA helicase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WG84_THATH) HSP 1 Score: 67.4 bits (163), Expect = 3.490e-8 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query: 1136 VPIAAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLLWS 1363
VPIA + ++W T G Q R QLP+ L WAIT+ KSQG +D++VVD+GK + L FV LSRT++ L +S
Sbjct: 425 VPIAPQTSNWKTTSGTSCQ--RTQLPVVLSWAITVHKSQGLTLDRVVVDIGKKE-SLSLTFVALSRTRKLSDLAFS 497
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A164MWJ3_9AGAM (Herpes_Helicase domain-containing protein (Fragment) n=3 Tax=Sistotremastrum TaxID=139133 RepID=A0A164MWJ3_9AGAM) HSP 1 Score: 54.7 bits (130), Expect = 1.630e-5 Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 2
Query: 1196 SREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGL 1354
+R QLPL WAIT+ KSQG + ++V+DLG++ GL+FV +SR K G+
Sbjct: 19 TRTQLPLITAWAITIHKSQGLTLVRVVIDLGENDFALGLSFVAISRCKSLAGI 71
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A0C9W413_SPHS4 (Herpes_Helicase domain-containing protein (Fragment) n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9W413_SPHS4) HSP 1 Score: 52.8 bits (125), Expect = 1.790e-5 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 2
Query: 1205 QLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGL 1354
QLPL L W IT+ KSQG ++K+++ L S + GL+FV +SR K+ GL
Sbjct: 1 QLPLTLAWVITIHKSQGLTLEKVIIKLEPSDFSLGLSFVAMSRVKKLSGL 50
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: UPI001025A63A (helicase C-terminal domain-containing protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI001025A63A) HSP 1 Score: 53.1 bits (126), Expect = 2.250e-5 Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 2
Query: 1145 AAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSR 1333
A + ++ S GN+ REQLPL L WA+++ K+QGQ +D++ +DLG+S G +V LSR
Sbjct: 6 AGQKSTTSSIENTGNELVREQLPLILSWAMSIHKAQGQTLDRVKIDLGRSFAN-GQAYVALSR 67
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A1X7TEW2_AMPQE (ATP-dependent DNA helicase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TEW2_AMPQE) HSP 1 Score: 54.3 bits (129), Expect = 2.600e-5 Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 2
Query: 1136 VPIAAKDTSWSVTGGEGNQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLLW 1360
VPI +W Q S QLPL L WA+T+ KSQG +DK+V+D+GK + GL FV SR ++ +L+
Sbjct: 54 VPITPVCRNWC---SSRKQCSHLQLPLKLAWAVTIHKSQGITLDKVVIDVGKKF-SCGLTFVACSRVRKLKDILF 124
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: A0A2S8NIM7_9MYCO (AAA family ATPase (Fragment) n=2 Tax=Mycobacterium sp. ITM-2016-00317 TaxID=2099694 RepID=A0A2S8NIM7_9MYCO) HSP 1 Score: 52.4 bits (124), Expect = 4.100e-5 Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 2
Query: 1160 SWSVTGG--EGNQESRE------QLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLL 1357
+W VT G+ SRE QLP L WAIT+ KSQGQ ++++VVDL +TG +V LSR GL+
Sbjct: 7 TWEVTRPVMSGSSLSREVVGAYTQLPFKLAWAITIHKSQGQTLERVVVDLTGGMFSTGQLYVALSRCTSLAGLV 80
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Match: Q2GZG5_CHAGB (Uncharacterized protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2GZG5_CHAGB) HSP 1 Score: 53.9 bits (128), Expect = 4.770e-5 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 2
Query: 1187 NQESREQLPLALYWAITMDKSQGQKVDKIVVDLGKSHVTTGLNFVCLSRTKRRVGLLW 1360
N SREQ PL + +AIT+ KSQG +DKIV D+ +GL++V +SR K GL++
Sbjct: 42 NSCSREQFPLLVSYAITVHKSQGITLDKIVCDISAPEFASGLSYVAVSRVKTLGGLMF 99 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1592.3820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1592.3820.1 >prot_H-elongata_contig1592.3820.1 ID=prot_H-elongata_contig1592.3820.1|Name=mRNA_H-elongata_contig1592.3820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp MTELSDRMVHARSGAAAKRPRDSGVEESKSFDPQNVLPQQARLPLGATSPback to top mRNA from alignment at H-elongata_contig1592:10023..12161+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1592.3820.1 ID=mRNA_H-elongata_contig1592.3820.1|Name=mRNA_H-elongata_contig1592.3820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2139bp|location=Sequence derived from alignment at H-elongata_contig1592:10023..12161+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1592:10023..12161+ >mRNA_H-elongata_contig1592.3820.1 ID=mRNA_H-elongata_contig1592.3820.1|Name=mRNA_H-elongata_contig1592.3820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig1592:10023..12161+ (Himanthalia elongata Himel1 dioecious)back to top |