mRNA_H-elongata_contig159099.3818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig159099.3818.1
Unique Name	mRNA_H-elongata_contig159099.3818.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  206 YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 274

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  346 YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 414

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.790e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   13 LSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  377 VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 443

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.810e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   13 LSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  453 VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 519

[Close]

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.870e-14
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   13 LSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  374 VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 440

[Close]

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.870e-14
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM+T + WM +LGCK +R  +S+YTD HE+ +VV    +Y+ ++ K+ALR P W RV+ ++L
Sbjct:   57 YQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAAL 125

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-13
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM T + WM  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLAL  P W RV+  +L
Sbjct:  461 YQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQPLWVRVQRDTL 529

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BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.010e-13
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   13 LSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            ++LP+SM T + W+  LGCK +R  +S+YTDGHE+ DVV     Y+  K KLALR P W RV+  +L
Sbjct:  306 VNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTL 372

[Close]

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.030e-13
Identity = 30/69 (43.48%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM+T + WM +LGC+ +R  +S+YTD HE+ +VV    +Y+ ++ K+ALR P W RV+ ++L
Sbjct:  392 YQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAAL 460

[Close]

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.760e-13
Identity = 30/69 (43.48%), Postives = 51/69 (73.91%), Query Frame = 1

Query:    7 YGLSLPISMTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRMPSWKRVEWSSL 213
            Y ++LP+SM+T++ WM +LGC+ +R  +S+YTD HE+ +VV    +Y+ ++ K+ALR P W RV+ ++L
Sbjct:  346 YQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAAL 414

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot

BLAST of mRNA_H-elongata_contig159099.3818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
A0A6H5JRV8_9PHAE	1.210e-14	50.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMT5_9PHAE	1.220e-14	50.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUX8_9PHAE	5.790e-14	50.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2T4_9PHAE	5.810e-14	50.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J4M4_9PHAE	5.870e-14	50.75	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KXL0_9PHAE	7.870e-14	44.93	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7P7_9PHAE	1.490e-13	49.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JI16_9PHAE	2.010e-13	49.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L611_9PHAE	2.030e-13	43.48	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMQ7_9PHAE	3.760e-13	43.48	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig159099	contig	H-elongata_contig159099:1256..1477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	222
Cds size	192
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929936.553149-UTR-H-elongata_contig159099:1255..1285	1622929936.553149-UTR-H-elongata_contig159099:1255..1285	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig159099 1256..1285 +
1691679214.6522033-UTR-H-elongata_contig159099:1255..1285	1691679214.6522033-UTR-H-elongata_contig159099:1255..1285	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig159099 1256..1285 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929936.5690389-CDS-H-elongata_contig159099:1285..1477	1622929936.5690389-CDS-H-elongata_contig159099:1285..1477	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig159099 1286..1477 +
1691679214.6607862-CDS-H-elongata_contig159099:1285..1477	1691679214.6607862-CDS-H-elongata_contig159099:1285..1477	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig159099 1286..1477 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig159099.3818.1	prot_H-elongata_contig159099.3818.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig159099 1286..1477 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig159099:1256..1477+
coding sequence from alignment at H-elongata_contig159099:1256..1477+

protein sequence of mRNA_H-elongata_contig159099.3818.1

>prot_H-elongata_contig159099.3818.1 ID=prot_H-elongata_contig159099.3818.1|Name=mRNA_H-elongata_contig159099.3818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MTTVNVWMRKLGCKVDRVRQSYYTDGHERADVVADSSDYVCRKWKLALRM
PSWKRVEWSSLNK*

mRNA from alignment at H-elongata_contig159099:1256..1477+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig159099.3818.1 ID=mRNA_H-elongata_contig159099.3818.1|Name=mRNA_H-elongata_contig159099.3818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig159099:1256..1477+ (Himanthalia elongata Himel1 dioecious)
GCACAGTATGGGCTGTCCCTGCCCATCTCCATGACTACCGTCAACGTGTG
GATGCGCAAGTTGGGGTGCAAGGTTGACCGGGTGAGACAATCGTACTACA
CTGACGGCCACGAGAGGGCTGACGTCGTGGCGGACAGCAGCGACTACGTC
TGTAGGAAGTGGAAACTGGCGTTGCGGATGCCAAGCTGGAAGCGAGTGGA
GTGGTCTTCCCTGAACAAGTAG

Coding sequence (CDS) from alignment at H-elongata_contig159099:1256..1477+

>mRNA_H-elongata_contig159099.3818.1 ID=mRNA_H-elongata_contig159099.3818.1|Name=mRNA_H-elongata_contig159099.3818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig159099:1256..1477+ (Himanthalia elongata Himel1 dioecious)
ATGACTACCGTCAACGTGTGGATGCGCAAGTTGGGGTGCAAGGTTGACCG
GGTGAGACAATCGTACTACACTGACGGCCACGAGAGGGCTGACGTCGTGG
CGGACAGCAGCGACTACGTCTGTAGGAAGTGGAAACTGGCGTTGCGGATG
CCAAGCTGGAAGCGAGTGGAGTGGTCTTCCCTGAACAAGTAGATGACTAC
CGTCAACGTGTGGATGCGCAAGTTGGGGTGCAAGGTTGACCGGGTGAGAC
AATCGTACTACACTGACGGCCACGAGAGGGCTGACGTCGTGGCGGACAGC
AGCGACTACGTCTGTAGGAAGTGGAAACTGGCGTTGCGGATGCCAAGCTG
GAAGCGAGTGGAGTGGTCTTCCCTGAACAAGTAG