mRNA_H-elongata_contig15906.3817.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: D7FHQ5_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ5_ECTSI) HSP 1 Score: 476 bits (1224), Expect = 8.820e-163 Identity = 260/425 (61.18%), Postives = 301/425 (70.82%), Query Frame = 1
Query: 19 VVYPEDDDVNMPKVFARQSFIVSGEEEEMAETILKARQLAGERRRSVLKPEDTVGKQGEIAAVAQNLAHRRDSLEILEYPLAVAGPSVGTPLQVGVTTDSAEDHDAARRRSSVLNRIPDNLRALVQQSDASGVQQKMESPYSPR---QDQVVVSKTDGRDDTDVVSLTSSMTHLAGGHH-KSWFQKIMASIQWKNLKPKRKQHTKESECKGRKDDNVTPATTPKPA---ISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNILSN 1272
VVYPE D PKVFARQSF+ SGEEEEMA+TIL+ARQLAG+RRRS ++GEIA VAQNLA RRDS A GV D A+ ARRRSSV+ ++PDNLRALVQQSDASGVQ+K ESPY+P+ D+ + TD ++ T S T G + W +M I+WK + K + G ++ TP +P P + ++ LLPKQL FAGRK+LILDLDETL HSSFKPV GADFI+DI V+GT YKVFV RPGVD FL+R+++LYEVIIFTASLPQYANPLLD+LDP G ITSRLFREHCTFHEGYFVKDL LLRH+SLESTIIVDNSPMAYMFQPENAIDC+SWID++ DTEL VIA FLE IVDVPDVRDLLEFWREG +L N
Sbjct: 59 VVYPEKHDAGKPKVFARQSFVASGEEEEMADTILQARQLAGQRRRSTFNANKKTAREGEIAQVAQNLAARRDSSAAATVNAAAGXXXXXXXXXAGVAVDPADADAVARRRSSVM-KLPDNLRALVQQSDASGVQKKTESPYNPQGASDDKAQTTTTDNTXXXXXLNNTGSSTASTGSTRGRGWLSNVMTFIRWKKVP---NSDRKRASRGGGGEEGGTPGLSPTPGKGGLGKKRRSLLPKQLPEFAGRKQLILDLDETLVHSSFKPVPGADFIMDIMVDGTFYKVFVLKRPGVDAFLERVAKLYEVIIFTASLPQYANPLLDVLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCISWIDDREDTELDVIASFLETIVDVPDVRDLLEFWREGAAVLDN 479
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A836CEE7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE7_9STRA) HSP 1 Score: 333 bits (853), Expect = 9.440e-107 Identity = 214/462 (46.32%), Postives = 262/462 (56.71%), Query Frame = 1
Query: 1 SRRRSSVVYPEDDDVNMPKVFARQSFIVSGEEEEMAETILKARQLAGERRRSVLKPEDTVGKQGEIAAVAQNLAHRRDSLEILEYPLAVAGPSVGTPLQVGVTT---------------DSAEDHDAARRRSSVLNRIPDNLRALVQQSDASGVQQKMESPYSP----------------RQDQVVVSKTDGRDDTDVVSLTSSMTH---LAGGHHKSWFQKIMASIQWKN-LKPKRKQHTKESECKGRKDDNVTPA---TTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRH-ESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNILS 1269
S R SVV+PE D PK+FARQSF+V+ + E MAETIL+AR+LA ERRRSV G + A+A RR S + +A + + H RRRSS + ++P LRAL+QQSD +G+QQK Q V D +++ VS S +G W+ +++ + + K T TT +P + LLP Q FAGRK L+LDLDETL HSSFKPV +D+ILDI V+ T YKVFV RPGVDEFL+R+S+ YEVIIFTASLPQYANPLLD+LDP GYIT RLFREHCTFHEGYFVKDL LLR+ ++L TIIVDNSPMAYMFQP+NAIDC SW+++ D ELYVIADFLE DV DVRD +EFWREG +LS
Sbjct: 30 SSRSGSVVFPEATDEGKPKLFARQSFLVTADNEAMAETILEARKLAMERRRSV-------ADDGGVHALA-----RRASADDKAAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDKPHLDERRRSSAIQKLPPQLRALMQQSDENGIQQKXXXXXXXXXXXXXXXXXXXXXXHHQLTGVQEAADAEEESIHVSADSPKQQSQSASGSGGNGWYTTMVSCFKRSDEANDDAKAATXXXXXXXXXXXGSGKGKTFTTSEPTVPAS---LLPPQAKQFAGRKLLVLDLDETLVHSSFKPVPTSDYILDIMVDSTAYKVFVLKRPGVDEFLERVSKDYEVIIFTASLPQYANPLLDMLDPKGYITGRLFREHCTFHEGYFVKDLTLLRNNKNLSDTIIVDNSPMAYMFQPDNAIDCTSWLEDPVDEELYVIADFLEKTKDVTDVRDYVEFWREGAEVLS 476
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A835YRL6_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL6_9STRA) HSP 1 Score: 269 bits (687), Expect = 1.640e-81 Identity = 204/508 (40.16%), Postives = 246/508 (48.43%), Query Frame = 1
Query: 1 SRRRSSVVYPEDDDVNMPKVFARQSFIVSGEEEEMAETILKARQLAGERRRSVLKPEDTVGKQGEIAAVAQNLAHRRDSLEILEYPLAVAGPSVGTPLQVGVTTDSAEDHDAARRRSSVLNRIPDNLRALVQQSDASGVQQKMESPYSPRQDQVVVSKTDGRDDTDVVSLTSSMTHLA---------------GGHHKSWFQKIMASIQWKNLKPKRKQHTKESECKGRKDDNVTPATTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYK----------------------VFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKD----------------------LILLRHES-LESTIIVDNSPMAYMFQPENAIDCMSWID-------------------------EKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNILS 1269
SR S +V PE D+ PK+FARQSF+V+ + E MAETIL+AR+LA ERRRSV G + A+A RR S ++ RRRSSV+ +P +LRAL+QQSD +GVQQK + P + K D SL +T++A G + PK A P L PK+ F GRK L+LDLDETL HSSFKPV +D+ILDI V+ T YK VFV RPGVDEFL+R+S+ YEVIIFTASLPQYANPLLD LDP G IT+RLFREHCTFHEGYFV L LLR+ + L TIIVDNSPMAYMFQP+NAIDC SW++ + D ELYVIA FLE I VP+VRD +EFWREG ++
Sbjct: 29 SRSGSVLVLPEASDIGKPKLFARQSFLVTADNEAMAETILEARKLAIERRRSV-------ADDGGVHALA-----RRASAXXXXXXXXXXXXXXXXXXXXXXXXPRMDE----RRRSSVIQILPPHLRALMQQSDENGVQQKWARGW-PALGAALSRKLRQMWDAPPPSLHHQLTNVAESPDVEEASTRTPRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEESLLGPQPKLAW----PGLRPKR---FVGRKLLVLDLDETLVHSSFKPVPKSDYILDIMVDDTPYKLGMRGSRRDRARAAETHGRVGCVFVLKRPGVDEFLERVSKDYEVIIFTASLPQYANPLLDRLDPKGLITARLFREHCTFHEGYFVXXXXXXXXXXXXXXXXXXXXXXXXLTLLRNNTNLSDTIIVDNSPMAYMFQPDNAIDCTSWLELRRALSLRCVRARRSSDVSRAREHEDPMDEELYVIAAFLERIRGVPEVRDYVEFWREGSEVMD 512
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A7S2I1W8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1W8_9STRA) HSP 1 Score: 206 bits (525), Expect = 1.500e-60 Identity = 104/186 (55.91%), Postives = 132/186 (70.97%), Query Frame = 1
Query: 706 LLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNI 1263
LLPK G+K L+LDLDETL HSSF+ V GADF++ + +E + V+V RPGVD FL M++ YE+I++TASL +YA+PLLDLLDP+ I +RLFRE C ++EG +VKDL LL + L IIVDNSP +Y+F PENAIDC S+ID+ SD EL I FL + DV DVRD+ WRE NI
Sbjct: 55 LLPKHHPDDQGKKCLVLDLDETLVHSSFRAVAGADFVIPVQIEDVVHFVYVAKRPGVDSFLTEMAKHYEIIVYTASLNKYADPLLDLLDPNRVIRTRLFRESCVYYEGNYVKDLSLLDRD-LSQAIIVDNSPNSYIFHPENAIDCSSFIDDPSDRELDQIGAFLAGVKDVDDVRDVCNLWREWPNI 239
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A2P4XKU3_9STRA (Nuclear LIM factor interactor-interacting protein cleavage-specific form n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XKU3_9STRA) HSP 1 Score: 207 bits (526), Expect = 4.470e-60 Identity = 107/194 (55.15%), Postives = 133/194 (68.56%), Query Frame = 1
Query: 667 TTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWR 1248
TTP Q P LLP S A +K L+LDLDETL HSSF+P ADFI+ ID++GT + V+V RPG +EFL M++ YE++++TASL +YA+PLLD LDP G I RL+REHC +EG +VKDL LL + L TIIVDNSP AY F P NAI C S+ID+ +D EL I+ FL DV DVRD L+FW
Sbjct: 113 TTPVSKEIQLRPNLLPSVSSNDANKKCLVLDLDETLVHSSFRPTDNADFIIPIDIDGTTHHVYVMKRPGAEEFLVEMAKYYEIVVYTASLSKYADPLLDKLDPEGTIRYRLYREHCVQYEGSYVKDLSLLDRD-LSQTIIVDNSPAAYTFHPRNAIGCSSFIDDPNDRELASISRFLTKYHDVEDVRDRLQFWN 305
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A7S1DE55_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE55_CYCTE) HSP 1 Score: 209 bits (532), Expect = 8.520e-60 Identity = 109/217 (50.23%), Postives = 143/217 (65.90%), Query Frame = 1
Query: 622 ESECKGRKDDNVTPATTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNILSN 1272
E +G K + P ++T LLP + G+K L+LDLDETL HSSF+ V GADF++ + +E + V+V RPGVDEFL M++ YE++I+TASL +YA+PLLDLLDP I +RLFRE C +HEG +VKD+ LL + L +IIVDNSP +Y+F PENAIDC S+ID+ D EL I FL I DV DVR+L FWRE ++ N
Sbjct: 183 EENQQGAKAQHTAVDDDPVEKTREQTIRLLPDVHPVDHGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVAKRPGVDEFLVEMAKHYEIVIYTASLNKYADPLLDLLDPCRVIRARLFRESCVYHEGNYVKDMSLLNRD-LSQSIIVDNSPSSYLFHPENAIDCSSFIDDPQDRELDQIGAFLTGIKDVEDVRNLCSFWREWPHVEIN 398
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A225W5E9_9STRA (Nuclear LIM factor interactor-interacting protein spore-specific form n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5E9_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.480e-58 Identity = 118/263 (44.87%), Postives = 157/263 (59.70%), Query Frame = 1
Query: 463 VVSKTD--GRDDTDVVSLTSSMTHLAGGHHKSWFQKIMASIQWKNLKPKRKQHTKESECKGRKDDNVTPATTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFW 1245
VV +TD G+ + L T + G H+ F+ I +I W L + + + R + T AI Q P LLP A +K L+LDLDETL HSSF+P ADFI+ ID++GT + V+V RPG +EFL M++ YE++++TASL +YA+PLLD LDP I RL+REHC +EG +VKDL LL + L TIIVDNSP AY F P+NAI C S+ID+ +D EL I+ FL DV DVR+ L+ W
Sbjct: 36 VVHQTDENGKQQPILTGLRRESTSTSKGQHRGSFRNIFGNI-WSALSTHDQSQDLDKTNRRRSSLSKPKTATVSNAI-QLRPNLLPPVSPNDANKKCLVLDLDETLVHSSFRPTDNADFIIPIDIDGTTHHVYVAKRPGAEEFLIEMAKYYEIVVYTASLSKYADPLLDKLDPEDVIRYRLYREHCVQYEGNYVKDLSLLDRD-LSQTIIVDNSPAAYTFHPQNAIGCSSFIDDPNDRELASISRFLTKHYDVEDVREHLQIW 295
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A6H5JYB3_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB3_9PHAE) HSP 1 Score: 193 bits (491), Expect = 1.580e-57 Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 1
Query: 817 LDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCM 1143
+DI V+ T YKVFV RPGVDEFL+R+++LYEVIIFTASLPQYANPLLD+LDP G ITSRLFREHCTFHEGYFVKDL LLRH+SLESTIIVDNSPMAYMFQPENAIDC+
Sbjct: 1 MDIMVDDTFYKVFVLKRPGVDEFLERVAKLYEVIIFTASLPQYANPLLDMLDPKGTITSRLFREHCTFHEGYFVKDLTLLRHQSLESTIIVDNSPMAYMFQPENAIDCI 109
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A6U3ZQT6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZQT6_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.660e-57 Identity = 103/186 (55.38%), Postives = 133/186 (71.51%), Query Frame = 1
Query: 706 LLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNI 1263
LLPK G+K L+LDLDETL HSSF+ V GADF++ + +E + V+V RPGVDEFL M++ YE++I+TASL +YA+PLLDLLDP+ I +RLFRE C ++EG +VKDL LL + L IIVDNSP +Y+F PENAIDC S+ID+ +D EL I FL + DV DVRD+ WR+ NI
Sbjct: 239 LLPKHHPDDMGKKCLVLDLDETLVHSSFRAVPGADFVIPVQIEDVVHFVYVAKRPGVDEFLTEMAQHYELVIYTASLNKYADPLLDLLDPNRVIRTRLFRESCVYYEGNYVKDLSLLDRD-LSQAIIVDNSPSSYIFHPENAIDCSSFIDDPTDRELDQIGAFLAGVKDVEDVRDVCSLWRQYPNI 423
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Match: A0A7S1YHT6_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YHT6_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.750e-57 Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 1
Query: 667 TTPKPAISQETPPLLPKQLSIFAGRKKLILDLDETLAHSSFKPVVGADFILDIDVEGTHYKVFVRIRPGVDEFLQRMSRLYEVIIFTASLPQYANPLLDLLDPSGYITSRLFREHCTFHEGYFVKDLILLRHESLESTIIVDNSPMAYMFQPENAIDCMSWIDEKSDTELYVIADFLEAIVDVPDVRDLLEFWREGGNI 1263
TT +P + T LLP G+K L+LDLDETL HSSF+ V GADF++ + +E + V+V RPGVDEFL M++ YE++++TASL +YA+PLLDLLDP+ I SRLFRE C ++EG +VKDL LL + L+ +IIVDNSP +Y+F PENAIDC S+ID+ +D EL I FL I V DVR L WRE N+
Sbjct: 242 TTAEPKPDENTVKLLPPIHPDDKGKKCLVLDLDETLVHSSFRSVPGADFVIPVQIEDVVHFVYVMKRPGVDEFLTEMAKHYEIVVYTASLNKYADPLLDLLDPNKVIRSRLFRESCVYYEGNYVKDLSLLDRD-LKESIIVDNSPNSYIFHPENAIDCSSFIDDPNDRELDQIGAFLAGISKVKDVRHLSNKWREWPNV 439 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15906.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15906.3817.1 >prot_H-elongata_contig15906.3817.1 ID=prot_H-elongata_contig15906.3817.1|Name=mRNA_H-elongata_contig15906.3817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp SRRRSSVVYPEDDDVNMPKVFARQSFIVSGEEEEMAETILKARQLAGERRback to top mRNA from alignment at H-elongata_contig15906:2648..6605+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15906.3817.1 ID=mRNA_H-elongata_contig15906.3817.1|Name=mRNA_H-elongata_contig15906.3817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3958bp|location=Sequence derived from alignment at H-elongata_contig15906:2648..6605+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15906:2648..6605+ >mRNA_H-elongata_contig15906.3817.1 ID=mRNA_H-elongata_contig15906.3817.1|Name=mRNA_H-elongata_contig15906.3817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig15906:2648..6605+ (Himanthalia elongata Himel1 dioecious)back to top |