mRNA_H-elongata_contig159031.3814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159031.3814.1
Unique NamemRNA_H-elongata_contig159031.3814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A7S2BD67_9STRA (Phosphoserine phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BD67_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.140e-25
Identity = 55/90 (61.11%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   19 CRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVVG 288
            C  AH   L AG+ +LV LLH RG AVYLVSGGFR     MI PVA +L I  + VFANT+LFD E G + GFD  EPTS DGGKPKV+G
Sbjct:  112 CLAAHPPQLNAGVAELVELLHARGTAVYLVSGGFR----LMINPVADMLDISHDRVFANTILFD-EAGNFTGFDASEPTSADGGKPKVIG 196
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: D7FPS7_ECTSI (Phosphoserine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS7_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 8.030e-24
Identity = 58/98 (59.18%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:   16 VCRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAET------GAYRGFDPDEPTSRDGGKPKVVGM 291
            +C   H   L  GI++LVS LH RGV VYLVSGGFR     MI PVA  LSIPR N+FAN LLF  E+      GAY GFD DEPTSRDGGK KV+ +
Sbjct:  136 LCLREHPPRLSPGISELVSALHERGVVVYLVSGGFRQ----MIAPVADQLSIPRGNIFANRLLFGDESSDGATAGAYVGFDTDEPTSRDGGKAKVIDL 229
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A485L5F1_9STRA (Aste57867_16006 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5F1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.340e-22
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:   19 CRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVVGM 291
            C  AH   L  GI  L+  LH R + VY VSGGFR     MI PVA+ L++P  N+FANT+ FDA TGAY GFD +E TSRDGGKP+V+ M
Sbjct:   98 CLRAHPPKLTTGIATLIKGLHARDIDVYFVSGGFR----LMISPVASQLNVPEANIFANTIHFDAATGAYAGFDANEMTSRDGGKPRVLDM 184
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: W7U7M1_9STRA (Phosphoserine phosphatase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 6.400e-22
Identity = 50/89 (56.18%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   19 CRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVV 285
            C   H   L  G+ + V  L  RG AVYLVSGGFR     MIEPVA  L +PR+ ++ANTLLF AE G+Y+ FDP+EPTSRDGGK  V+
Sbjct:  140 CLLRHPATLSPGVKEFVGRLQARGTAVYLVSGGFR----LMIEPVADRLLVPRDRIYANTLLF-AENGSYKDFDPNEPTSRDGGKAAVI 223
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A835ZG36_9STRA (Phosphoserine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG36_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.330e-21
Identity = 50/89 (56.18%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   19 CRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVV 285
            C   H   L  G+ DL + LH RG  VYLVSGGFR    +MI PVA VL IP   V+ANT++++A+ G+Y+GFD  EPTSRDGGKP VV
Sbjct:  117 CLREHPPQLSPGMADLAAALHERGTDVYLVSGGFR----SMIYPVAKVLGIPESRVYANTIMYNAD-GSYQGFDEQEPTSRDGGKPAVV 200
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A2R5GSD3_9STRA (Phosphoserine phosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSD3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.650e-21
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:   19 CRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVV 285
            C   H + L  GI DL++ LH R V VYLVSGGFR     MI P+A +L+I R+ ++AN LLF  + G++ GFDP+EPTSR GGK KVV
Sbjct:  104 CNTKHPLELTPGIADLIATLHERNVHVYLVSGGFRQ----MINPLADILNISRDRIYANNLLFK-DDGSFAGFDPEEPTSRAGGKAKVV 187
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: D8S1V0_SELML (Phosphoserine phosphatase (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S1V0_SELML)

HSP 1 Score: 91.7 bits (226), Expect = 8.970e-21
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   43 LYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVVGM 291
            L  GI +LV  +H RG  VYLVSGGFR     MIEP A +L IP+EN+FAN L+FD + G + GFD DEPTSR GGK   + +
Sbjct:   80 LTPGIRELVEKVHSRGTQVYLVSGGFRQ----MIEPAAVLLGIPKENIFANRLVFD-DAGGFDGFDEDEPTSRSGGKATAIAL 157
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: D8RLF0_SELML (Phosphoserine phosphatase n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RLF0_SELML)

HSP 1 Score: 91.7 bits (226), Expect = 9.920e-21
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   43 LYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVVGM 291
            L  GI +LV  +H RG  VYLVSGGFR     MIEP A +L IP+EN+FAN L+FD + G + GFD DEPTSR GGK   + +
Sbjct:   91 LTPGIRELVEKVHSRGTQVYLVSGGFRQ----MIEPAAVLLGIPKENIFANRLVFD-DAGGFDGFDEDEPTSRSGGKATAIAL 168
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A821X1X7_9NEOP (Phosphoserine phosphatase n=9 Tax=Pieris TaxID=7115 RepID=A0A821X1X7_9NEOP)

HSP 1 Score: 91.3 bits (225), Expect = 2.120e-20
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   37 IFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVV 285
            I L  G+ +LV +L  RGVAVYLVSGGFR    ++I+PVA +LSIPR NV+AN L F    G Y GFD +EPTSR GGKP V+
Sbjct:  110 IHLTPGVAELVKVLQERGVAVYLVSGGFR----SLIDPVADLLSIPRSNVYANRLKFYFN-GEYAGFDENEPTSRSGGKPLVI 187
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BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Match: A0A4D9D007_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D007_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.590e-20
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:   43 LYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEPVATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVV 285
            L  G+ + V  L  RG AVYLVSGGFR     MIEPVA  L +PR+ ++ANTLLF AE G+Y+ FDP+EPTSRDGGK  VV
Sbjct:  126 LSPGVKEFVGRLQARGTAVYLVSGGFR----LMIEPVADRLLVPRDRIYANTLLF-AENGSYKDFDPNEPTSRDGGKAAVV 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159031.3814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BD67_9STRA2.140e-2561.11Phosphoserine phosphatase n=1 Tax=Florenciella par... [more]
D7FPS7_ECTSI8.030e-2459.18Phosphoserine phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A485L5F1_9STRA3.340e-2256.04Aste57867_16006 protein n=1 Tax=Aphanomyces stella... [more]
W7U7M1_9STRA6.400e-2256.18Phosphoserine phosphatase n=2 Tax=Nannochloropsis ... [more]
A0A835ZG36_9STRA1.330e-2156.18Phosphoserine phosphatase n=1 Tax=Tribonema minus ... [more]
A0A2R5GSD3_9STRA2.650e-2153.93Phosphoserine phosphatase n=1 Tax=Hondaea fermenta... [more]
D8S1V0_SELML8.970e-2155.42Phosphoserine phosphatase (Fragment) n=1 Tax=Selag... [more]
D8RLF0_SELML9.920e-2155.42Phosphoserine phosphatase n=3 Tax=Selaginella moel... [more]
A0A821X1X7_9NEOP2.120e-2059.04Phosphoserine phosphatase n=9 Tax=Pieris TaxID=711... [more]
A0A4D9D007_9STRA2.590e-2060.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159031contigH-elongata_contig159031:667..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue3.5e-19
Seed eggNOG ortholog2880.D7FPS7
Preferred namePSPH
KEGG rclassRC00006,RC00017,RC00036
KEGG koko:K00831,ko:K01079
KEGG ReactionR00582,R04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016043,GO:0016053,GO:0016311,GO:0016545,GO:0016787,GO:0016788,GO:0016791,GO:0019098,GO:0019752,GO:0019953,GO:0022008,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031175,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033574,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045433,GO:0045471,GO:0046394,GO:0046677,GO:0046872,GO:0046983,GO:0048065,GO:0048149,GO:0048468,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051704,GO:0060179,GO:0061564,GO:0071704,GO:0071840,GO:0097305,GO:0097458,GO:0097485,GO:0120025,GO:0120036,GO:0120039,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901654,GO:1901700
EggNOG free text desc.phosphoserine phosphatase activity
EggNOG OGsCOG0560@1,KOG1615@2759
EC2.6.1.52,3.1.3.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009
Hectar predicted targeting categorysignal peptide
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.20266-CDS-H-elongata_contig159031:666..8041622929936.20266-CDS-H-elongata_contig159031:666..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159031 667..804 +
1691679214.4828346-CDS-H-elongata_contig159031:666..8041691679214.4828346-CDS-H-elongata_contig159031:666..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159031 667..804 +
1622929936.222214-CDS-H-elongata_contig159031:1239..13951622929936.222214-CDS-H-elongata_contig159031:1239..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159031 1240..1395 +
1691679214.499199-CDS-H-elongata_contig159031:1239..13951691679214.499199-CDS-H-elongata_contig159031:1239..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159031 1240..1395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159031.3814.1prot_H-elongata_contig159031.3814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159031 667..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159031.3814.1

>prot_H-elongata_contig159031.3814.1 ID=prot_H-elongata_contig159031.3814.1|Name=mRNA_H-elongata_contig159031.3814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RRRFRVCRCAHLIFLYAGITDLVSLLHGRGVAVYLVSGGFRPASSAMIEP
VATVLSIPRENVFANTLLFDAETGAYRGFDPDEPTSRDGGKPKVVGM*
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mRNA from alignment at H-elongata_contig159031:667..1395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159031.3814.1 ID=mRNA_H-elongata_contig159031.3814.1|Name=mRNA_H-elongata_contig159031.3814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at H-elongata_contig159031:667..1395+ (Himanthalia elongata Himel1 dioecious)
CGTCGCCGTTTTCGTGTTTGTCGTTGTGCCCATCTTATCTTCCTTTACGC
AGGAATAACGGATCTTGTATCGCTCTTGCACGGCAGAGGAGTCGCCGTGT
ACCTGGTCTCGGGAGGCTTTAGGCCGGCAAGCTCCGCCGTGCAGTCGTGA
AATACCCCCCTGTCCCCTGTCCCCTGTCCCCTGTATCGCCAGCTGTTGCA
GATAAAGGATGTACATTTGTTAGAGCGTAGAGCTACTGCTGTAGTCTGTA
GGCGTGAACAGGGGGCGAGGGGCGATGAGAAAGGGTTGACTGGAGGAAAT
TGCCTCATGATTTCTAGGCGTAAATTCCGAAGCCCGCGGTCGGTGGCGGT
CGGCAATTAAGCTTATCCCCGAGGCGGAGTTGTTGCGAAGAAACGACCTG
GGGCAGCGCGATTGGAGTCACTGTTGATCGACCGCTTCTCTCTCAGGTAG
CCAGCGATAGTCGGTTGTCATTTGGTGTCGTGAGCCCCTTTAAACTCATC
AATATTCTCTCTGTTTACGATCACAGTGCCATATCAGTTATAACGACAAT
ACATCAACTGAACGCACGCACAGATGATCGAGCCGGTGGCTACCGTGCTC
TCCATTCCGAGGGAAAACGTTTTCGCGAACACGTTGCTCTTCGACGCTGA
AACTGGAGCCTACAGAGGCTTCGATCCAGACGAGCCCACCTCGAGGGACG
GCGGGAAACCCAAGGTTGTTGGCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig159031:667..1395+

>mRNA_H-elongata_contig159031.3814.1 ID=mRNA_H-elongata_contig159031.3814.1|Name=mRNA_H-elongata_contig159031.3814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig159031:667..1395+ (Himanthalia elongata Himel1 dioecious)
CGTCGCCGTTTTCGTGTTTGTCGTTGTGCCCATCTTATCTTCCTTTACGC
AGGAATAACGGATCTTGTATCGCTCTTGCACGGCAGAGGAGTCGCCGTGT
ACCTGGTCTCGGGAGGCTTTAGGCCGGCAAGCTCCGCCCGTCGCCGTTTT
CGTGTTTGTCGTTGTGCCCATCTTATCTTCCTTTACGCAGGAATAACGGA
TCTTGTATCGCTCTTGCACGGCAGAGGAGTCGCCGTGTACCTGGTCTCGG
GAGGCTTTAGGCCGGCAAGCTCCGCCATGATCGAGCCGGTGGCTACCGTG
CTCTCCATTCCGAGGGAAAACGTTTTCGCGAACACGTTGCTCTTCGACGC
TGAAACTGGAGCCTACAGAGGCTTCGATCCAGACGAGCCCACCTCGAGGG
ACGGCGGGAAACCCAAGGTTGTTGGCATGTGAATGATCGAGCCGGTGGCT
ACCGTGCTCTCCATTCCGAGGGAAAACGTTTTCGCGAACACGTTGCTCTT
CGACGCTGAAACTGGAGCCTACAGAGGCTTCGATCCAGACGAGCCCACCT
CGAGGGACGGCGGGAAACCCAAGGTTGTTGGCATGTGA
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