mRNA_H-elongata_contig159027.3812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159027.3812.1
Unique NamemRNA_H-elongata_contig159027.3812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: UPI001184A264 (LuxR C-terminal-related transcriptional regulator n=2 Tax=unclassified Prochlorococcus TaxID=2627481 RepID=UPI001184A264)

HSP 1 Score: 56.2 bits (134), Expect = 8.100e-9
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGT++RTELVRY+L  +LV
Sbjct:   72 KEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 114
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: A9BD30_PROM4 (Two-component response regulator n=2 Tax=Prochlorococcus TaxID=1218 RepID=A9BD30_PROM4)

HSP 1 Score: 58.2 bits (139), Expect = 9.470e-9
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGT++RTELVRY+L  NLV
Sbjct:  199 KEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENNLV 241
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: A0A326QKD5_9CYAN (DNA-binding response regulator n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QKD5_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGTT+RTELVRY+L  +LV
Sbjct:  236 KEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENSLV 278
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: UPI0019DB7329 (Response regulator transcription factor n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019DB7329)

HSP 1 Score: 57.4 bits (137), Expect = 1.730e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE SVR+VEK+VS + +KTGT++RTELVRYSL   L+
Sbjct:  187 KEIAKRLETSVRNVEKYVSRLFSKTGTSSRTELVRYSLEHGLI 229
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: A3YUH5_9SYNE (Two component transcriptional regulator, LuxR family protein n=5 Tax=Synechococcus TaxID=1129 RepID=A3YUH5_9SYNE)

HSP 1 Score: 57.4 bits (137), Expect = 1.960e-8
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGTT+RTELVRY+L   LV
Sbjct:  209 KEIARRLETSIRNVEKYVSRLFTKTGTTSRTELVRYALENGLV 251
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: UPI0019EB0E08 (Response regulator transcription factor n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019EB0E08)

HSP 1 Score: 57.0 bits (136), Expect = 2.280e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ L  SVR+VEK+VS + +KTGTT+RTELVR++L+E L 
Sbjct:  186 KEIAKALNTSVRNVEKYVSRLFSKTGTTSRTELVRFALKEGLT 228
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: A0A358C248_9CYAN (DNA-binding response regulator n=3 Tax=Synechococcales TaxID=1890424 RepID=A0A358C248_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 2.750e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS + AKTGT++RTELVRY+L   LV
Sbjct:  211 KEIARQLETSIRNVEKYVSRLFAKTGTSSRTELVRYALENALV 253
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: Q7VE20_PROMA (Two-component response regulator n=3 Tax=Prochlorococcus TaxID=1218 RepID=Q7VE20_PROMA)

HSP 1 Score: 56.2 bits (134), Expect = 4.880e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGT++RTELVRY+L  +LV
Sbjct:  199 KEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: Q46HK3_PROMT (Two component transcriptional regulator, LuxR family n=7 Tax=Prochlorococcus TaxID=1218 RepID=Q46HK3_PROMT)

HSP 1 Score: 56.2 bits (134), Expect = 4.880e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGT++RTELVRY+L  +LV
Sbjct:  199 KEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241
[Close]
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Match: A2BNW4_PROMS (Two-component response regulator n=39 Tax=Prochlorococcus TaxID=1218 RepID=A2BNW4_PROMS)

HSP 1 Score: 56.2 bits (134), Expect = 4.880e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLV 129
            +EIA+ LE S+R+VEK+VS +  KTGT++RTELVRY+L  +LV
Sbjct:  199 KEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLV 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159027.3812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001184A2648.100e-960.47LuxR C-terminal-related transcriptional regulator ... [more]
A9BD30_PROM49.470e-962.79Two-component response regulator n=2 Tax=Prochloro... [more]
A0A326QKD5_9CYAN1.640e-862.79DNA-binding response regulator n=2 Tax=Synechococc... [more]
UPI0019DB73291.730e-862.79Response regulator transcription factor n=1 Tax=fi... [more]
A3YUH5_9SYNE1.960e-862.79Two component transcriptional regulator, LuxR fami... [more]
UPI0019EB0E082.280e-860.47Response regulator transcription factor n=1 Tax=Ge... [more]
A0A358C248_9CYAN2.750e-862.79DNA-binding response regulator n=3 Tax=Synechococc... [more]
Q7VE20_PROMA4.880e-860.47Two-component response regulator n=3 Tax=Prochloro... [more]
Q46HK3_PROMT4.880e-860.47Two component transcriptional regulator, LuxR fami... [more]
A2BNW4_PROMS4.880e-860.47Two-component response regulator n=39 Tax=Prochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159027contigH-elongata_contig159027:1186..1338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.046097-CDS-H-elongata_contig159027:1185..13381622929936.046097-CDS-H-elongata_contig159027:1185..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159027 1186..1338 +
1691679214.430003-CDS-H-elongata_contig159027:1185..13381691679214.430003-CDS-H-elongata_contig159027:1185..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159027 1186..1338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159027.3812.1prot_H-elongata_contig159027.3812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159027 1186..1338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159027.3812.1

>prot_H-elongata_contig159027.3812.1 ID=prot_H-elongata_contig159027.3812.1|Name=mRNA_H-elongata_contig159027.3812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
REIAQVLELSVRSVEKHVSSMLAKTGTTNRTELVRYSLRENLVPEEDGPY
*
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mRNA from alignment at H-elongata_contig159027:1186..1338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159027.3812.1 ID=mRNA_H-elongata_contig159027.3812.1|Name=mRNA_H-elongata_contig159027.3812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig159027:1186..1338+ (Himanthalia elongata Himel1 dioecious)
AGAGAGATAGCCCAGGTGCTCGAACTGAGCGTTCGTTCGGTGGAGAAACA
CGTGTCCAGCATGCTTGCCAAGACCGGAACCACAAACAGGACGGAGCTCG
TCCGGTACAGCCTGCGCGAGAATCTCGTTCCCGAGGAAGACGGTCCTTAC
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig159027:1186..1338+

>mRNA_H-elongata_contig159027.3812.1 ID=mRNA_H-elongata_contig159027.3812.1|Name=mRNA_H-elongata_contig159027.3812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig159027:1186..1338+ (Himanthalia elongata Himel1 dioecious)
AGAGAGATAGCCCAGGTGCTCGAACTGAGCGTTCGTTCGGTGGAGAAACA
CGTGTCCAGCATGCTTGCCAAGACCGGAACCACAAACAGGACGGAGCTCG
TCCGGTACAGCCTGCGCGAGAATCTCGTTCCCGAGGAAGACGGTCCTTAC
TGAAGAGAGATAGCCCAGGTGCTCGAACTGAGCGTTCGTTCGGTGGAGAA
ACACGTGTCCAGCATGCTTGCCAAGACCGGAACCACAAACAGGACGGAGC
TCGTCCGGTACAGCCTGCGCGAGAATCTCGTTCCCGAGGAAGACGGTCCT
TACTGA
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