mRNA_H-elongata_contig158941.3811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158941.3811.1
Unique NamemRNA_H-elongata_contig158941.3811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig158941.3811.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   22 CYHNREDSTADTEYSHGYRYCNTTDPYRTIMSY---PCTDDYT------VSRLNWFSNPDVNLLDKPTGTTDNDCARTIEE 237
            CYH+R++S    EY HGYRYC  +DPYRTIMSY    C  D T      V ++N+FSNP+V  L+KPTGT   D AR IEE
Sbjct:  495 CYHDRDNSETQDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTGTATADNARCIEE 575
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158941.3811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE1.030e-1654.32LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158941contigH-elongata_contig158941:199..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.004304-CDS-H-elongata_contig158941:198..4351622929936.004304-CDS-H-elongata_contig158941:198..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158941 199..435 +
1691679214.414023-CDS-H-elongata_contig158941:198..4351691679214.414023-CDS-H-elongata_contig158941:198..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158941 199..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158941.3811.1prot_H-elongata_contig158941.3811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158941 199..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158941.3811.1

>prot_H-elongata_contig158941.3811.1 ID=prot_H-elongata_contig158941.3811.1|Name=mRNA_H-elongata_contig158941.3811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
FVPRPCRCYHNREDSTADTEYSHGYRYCNTTDPYRTIMSYPCTDDYTVSR
LNWFSNPDVNLLDKPTGTTDNDCARTIEE
back to top

mRNA from alignment at H-elongata_contig158941:199..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158941.3811.1 ID=mRNA_H-elongata_contig158941.3811.1|Name=mRNA_H-elongata_contig158941.3811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig158941:199..435+ (Himanthalia elongata Himel1 dioecious)
TTCGTTCCTCGCCCCTGCAGGTGCTATCACAACCGTGAAGACTCTACCGC
AGACACTGAATACTCCCACGGATACCGATATTGCAACACAACGGACCCGT
ACCGCACGATCATGTCGTACCCGTGTACCGACGACTACACCGTTTCCCGC
CTCAACTGGTTTTCGAATCCCGATGTGAACTTGCTCGACAAGCCTACGGG
AACGACTGACAACGACTGTGCGCGGACAATCGAGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig158941:199..435+

>mRNA_H-elongata_contig158941.3811.1 ID=mRNA_H-elongata_contig158941.3811.1|Name=mRNA_H-elongata_contig158941.3811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig158941:199..435+ (Himanthalia elongata Himel1 dioecious)
TTCGTTCCTCGCCCCTGCAGGTGCTATCACAACCGTGAAGACTCTACCGC
AGACACTGAATACTCCCACGGATACCGATATTGCAACACAACGGACCCGT
ACCGCACGATCATGTCGTACCCGTGTACCGACGACTACACCGTTTCCCGC
CTCAACTGGTTTTCGAATCCCGATGTGAACTTGCTCGACAAGCCTACGGG
AACGACTGACAACGACTGTGCGCGGACAATCGAGGAGTTCGTTCCTCGCC
CCTGCAGGTGCTATCACAACCGTGAAGACTCTACCGCAGACACTGAATAC
TCCCACGGATACCGATATTGCAACACAACGGACCCGTACCGCACGATCAT
GTCGTACCCGTGTACCGACGACTACACCGTTTCCCGCCTCAACTGGTTTT
CGAATCCCGATGTGAACTTGCTCGACAAGCCTACGGGAACGACTGACAAC
GACTGTGCGCGGACAATCGAGGAG
back to top