mRNA_H-elongata_contig15879.3804.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 123 bits (308), Expect = 3.900e-31 Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y II +DD TR++W+YF+R KS++ +A FLA R +G P I+RSD+ + G F +C + IK+EFT A +PQ NGVAERGL LI++ A A+ QAKV F + LP +LW + + AC +N TA ++N
Sbjct: 107 SVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSAN 250
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.910e-30 Identity = 59/144 (40.97%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPP---VIMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y++I +DD TR++ +YF++ KS++ A E++LA+ R +G P +++RSD+ + +G F +CRK+ IK+EFT A++P+ +GVAER L LI+ A A+ QA + G P LW + +C+ LNCT+TTSN
Sbjct: 49 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSN 190
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.200e-30 Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 429
S G Y++I RDD TR++ ++F++ KS++ A E +LAD R P + R+D + + G+F E+CR++ IK+EFT NTP+ NGVAER L L+ +A AS QAK F D P LW + + ACH +NCTATT N G
Sbjct: 5 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQ-GQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFP--DAPVSPGLWAEAISCACHQMNCTATTGNPG 147
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 123 bits (309), Expect = 6.210e-30 Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y +I +DD TR +W+YF+R KS++ +A FLA+ R G P I+RSD+ + G F +C + IK+EFT A++P+ NGVAERGL LI++ A A+ QAKV F + LP RLW + + AC LN TA ++N
Sbjct: 490 SIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSAN 633
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 123 bits (309), Expect = 6.240e-30 Identity = 64/144 (44.44%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y +I +DD TR +W+YF+R KS++ +A FLA+ R G P I+RSD+ + G F +C + IK+EFT A++P+ NGVAERGL LI++ A A+ QAKV F + LP RLW + + AC LN TA ++N
Sbjct: 466 SIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSAN 609
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.180e-29 Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPVIM---RSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y +I +DD TR +W+YF+R KS++ +A FLA R G P ++ RSD+ + G F +C + IK+EFT A++PQ NGVAERGL LI++ A A+ QAKV F + LP +LW + + AC LN TA ++N
Sbjct: 343 SVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSAN 486
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.300e-29 Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 429
S G Y++I R D TR++ ++F+++KSE+ +ALE+F+AD R G P ++RSD+ Q G+F + CRK IK+E T +TP+ NGVAER L +I A AS QAK F D P LW + ACH LNCTATT+N G
Sbjct: 36 SIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQFIADYRSEGTPCEVYVVRSDNEFQ---GQFSKTCRKWGIKQEKTPPHTPKYNGVAERWLGIISDAALASRIQAKEMFP--DAPTDPALWAEAIACACHQLNCTATTANPG 176
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.840e-29 Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 423
S G Y +I +DD TR +W+YF+R KS++ +A FLA R +G P I+RSD+ + G F +C + IK+EFT A +PQ NGVAERGL LI++ A A+ QAKV F + LP +LW + + AC +N TA ++N
Sbjct: 205 SVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSAN 348
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 121 bits (303), Expect = 4.010e-29 Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 429
S G Y++I RDD +R++ ++F++ KS++ EKFLAD R +G P I R+D + + G+F E+CR+H IK+EFT +TP+ NGVAER L LI A AS QA F D P LW + + ACH LNCTAT SN+G
Sbjct: 715 SIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQ-GQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFP--DAPNHPGLWAEAISCACHQLNCTATKSNEG 857
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 118 bits (296), Expect = 5.590e-29 Identity = 64/146 (43.84%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 1 SKGRMKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 429
S G Y++I RDD TR++ ++F++ KS++ A E++LAD R P + R+D + + G+F E+CR+ IK+EFT NTP+ NGVAER L L+ +A AS QAK F D P LW + + ACH +NCTATT N G
Sbjct: 209 SIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQ-GQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFP--DAPVSPGLWAEAISCACHQMNCTATTGNPG 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15879.3804.1 >prot_H-elongata_contig15879.3804.1 ID=prot_H-elongata_contig15879.3804.1|Name=mRNA_H-elongata_contig15879.3804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp MKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPVIMRSDDback to top mRNA from alignment at H-elongata_contig15879:1802..2230+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15879.3804.1 ID=mRNA_H-elongata_contig15879.3804.1|Name=mRNA_H-elongata_contig15879.3804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig15879:1802..2230+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15879:1802..2230+ >mRNA_H-elongata_contig15879.3804.1 ID=mRNA_H-elongata_contig15879.3804.1|Name=mRNA_H-elongata_contig15879.3804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig15879:1802..2230+ (Himanthalia elongata Himel1 dioecious)back to top |