mRNA_H-elongata_contig158787.3803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158787.3803.1
Unique NamemRNA_H-elongata_contig158787.3803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig158787.3803.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.970e-24
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 RPVKLHLWDVAGSQLTADPCHHALIADGADGVLYVMDVTNRESLQAVDGWDRALAK 168
            RPVKLHLWDVAGSQLTA PCHH LI  GA+GVLYVMDVT+RESLQAVD WD+AL+K
Sbjct:   59 RPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVMDVTSRESLQAVDDWDQALSK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158787.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE2.970e-2483.93SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158787contigH-elongata_contig158787:886..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue9.5e-21
Seed eggNOG ortholog2880.D7FGU6
KEGG koko:K07874
KEGG Pathwayko05134,map05134
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.150301-CDS-H-elongata_contig158787:885..10831622929935.150301-CDS-H-elongata_contig158787:885..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158787 886..1083 +
1691679214.0414054-CDS-H-elongata_contig158787:885..10831691679214.0414054-CDS-H-elongata_contig158787:885..1083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158787 886..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158787.3803.1prot_H-elongata_contig158787.3803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158787 886..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158787.3803.1

>prot_H-elongata_contig158787.3803.1 ID=prot_H-elongata_contig158787.3803.1|Name=mRNA_H-elongata_contig158787.3803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RPVKLHLWDVAGSQLTADPCHHALIADGADGVLYVMDVTNRESLQAVDGW
DRALAKVVFVIGVNYY
back to top

mRNA from alignment at H-elongata_contig158787:886..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158787.3803.1 ID=mRNA_H-elongata_contig158787.3803.1|Name=mRNA_H-elongata_contig158787.3803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig158787:886..1083+ (Himanthalia elongata Himel1 dioecious)
CGACCGGTGAAGCTTCACCTCTGGGATGTTGCCGGATCTCAGCTGACCGC
TGACCCGTGCCACCATGCGTTGATCGCTGATGGAGCGGACGGCGTGCTGT
ACGTGATGGACGTGACAAACAGGGAGAGCCTTCAAGCGGTGGATGGCTGG
GACCGCGCCCTCGCCAAGGTTGTTTTTGTTATTGGTGTTAATTATTAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig158787:886..1083+

>mRNA_H-elongata_contig158787.3803.1 ID=mRNA_H-elongata_contig158787.3803.1|Name=mRNA_H-elongata_contig158787.3803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig158787:886..1083+ (Himanthalia elongata Himel1 dioecious)
CGACCGGTGAAGCTTCACCTCTGGGATGTTGCCGGATCTCAGCTGACCGC
TGACCCGTGCCACCATGCGTTGATCGCTGATGGAGCGGACGGCGTGCTGT
ACGTGATGGACGTGACAAACAGGGAGAGCCTTCAAGCGGTGGATGGCTGG
GACCGCGCCCTCGCCAAGGTTGTTTTTGTTATTGGTGTTAATTATTATCG
ACCGGTGAAGCTTCACCTCTGGGATGTTGCCGGATCTCAGCTGACCGCTG
ACCCGTGCCACCATGCGTTGATCGCTGATGGAGCGGACGGCGTGCTGTAC
GTGATGGACGTGACAAACAGGGAGAGCCTTCAAGCGGTGGATGGCTGGGA
CCGCGCCCTCGCCAAGGTTGTTTTTGTTATTGGTGTTAATTATTAT
back to top