mRNA_H-elongata_contig15875.3801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15875.3801.1
Unique NamemRNA_H-elongata_contig15875.3801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15875.3801.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 8.730e-89
Identity = 188/409 (45.97%), Postives = 245/409 (59.90%), Query Frame = 1 
Query:    4 IPAA-VRSLSTKPWLPRLGGLIITTATVVMTV-FQGPSTAKSSP---------VGYQTLYAS---RG--------QSLSILGANRILQEEDDMVDEHLITYDTQLQLFMCNPSLIEEGNDAYLVDNDRLAVALSRVLGLGQSDTDDIEVTMKTGPLDAEDDTYMCDTGGMLQWHAMINYDADDAAVLGTTPAVMAAQANDYVTYSSNDFKALLSAFINDEYASDAQDVDVAASVIVVGTLGWIVTFPAETTSVREAETSGSLDGFGIRVAGDASLWTWWMWLAFSLVLACCMVPVCCCLCRRI---KNAPTKALKTTTHDERSGSGDSD--EVRSREWDSSELDLE-DYSEYEDDEMKRDYDDADRSSEEPTSCSSSNRLGRRS--GQALIKETGKRSAWEQPVEASSR 1140
            +PAA   S S  PW+ R  GL+I  A  V TV F   +TA +S          VG Q+LYAS   RG        +  S+    R+LQEE   V   ++ Y T+LQ+FMCNPSL  EGNDA+LVD   LA ALS + G+ Q+D  DI VT+KT P+D +D +YMCDT GMLQWHA + Y A  A    TTPAV+AAQANDYV YSS+ FKALL+ FIN EYA + + V+++A  I++ T+GWIVTFPAE +  +E  T+GS DG  + +  D+SLW WW+WL ++L++AC                K A    L  T    R G G+    ++R  EW  +ELD E DY  Y+  EMKR+YD A R  E PT+   S+R G++S   QA ++E GK+SAW QP   SSR
Sbjct:    1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIAT----RKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVE-PTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSR 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15875.3801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI8.730e-8945.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15875contigH-elongata_contig15875:1928..5119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005010.1
Exons5
Model size1155
Cds size1155
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15875.3801.1prot_H-elongata_contig15875.3801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15875 1928..5119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.877449-CDS-H-elongata_contig15875:1927..22871622929934.877449-CDS-H-elongata_contig15875:1927..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 1928..2287 +
1691679213.931033-CDS-H-elongata_contig15875:1927..22871691679213.931033-CDS-H-elongata_contig15875:1927..2287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 1928..2287 +
1622929934.8897743-CDS-H-elongata_contig15875:3845..40821622929934.8897743-CDS-H-elongata_contig15875:3845..4082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 3846..4082 +
1691679213.9385102-CDS-H-elongata_contig15875:3845..40821691679213.9385102-CDS-H-elongata_contig15875:3845..4082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 3846..4082 +
1622929934.9032288-CDS-H-elongata_contig15875:4232..44741622929934.9032288-CDS-H-elongata_contig15875:4232..4474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 4233..4474 +
1691679213.9461367-CDS-H-elongata_contig15875:4232..44741691679213.9461367-CDS-H-elongata_contig15875:4232..4474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 4233..4474 +
1622929934.9183972-CDS-H-elongata_contig15875:4651..49041622929934.9183972-CDS-H-elongata_contig15875:4651..4904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 4652..4904 +
1691679213.9539695-CDS-H-elongata_contig15875:4651..49041691679213.9539695-CDS-H-elongata_contig15875:4651..4904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 4652..4904 +
1622929934.9333744-CDS-H-elongata_contig15875:5056..51191622929934.9333744-CDS-H-elongata_contig15875:5056..5119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 5057..5119 +
1691679213.9625225-CDS-H-elongata_contig15875:5056..51191691679213.9625225-CDS-H-elongata_contig15875:5056..5119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15875 5057..5119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15875.3801.1

>prot_H-elongata_contig15875.3801.1 ID=prot_H-elongata_contig15875.3801.1|Name=mRNA_H-elongata_contig15875.3801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=385bp
SIPAAVRSLSTKPWLPRLGGLIITTATVVMTVFQGPSTAKSSPVGYQTLY
ASRGQSLSILGANRILQEEDDMVDEHLITYDTQLQLFMCNPSLIEEGNDA
YLVDNDRLAVALSRVLGLGQSDTDDIEVTMKTGPLDAEDDTYMCDTGGML
QWHAMINYDADDAAVLGTTPAVMAAQANDYVTYSSNDFKALLSAFINDEY
ASDAQDVDVAASVIVVGTLGWIVTFPAETTSVREAETSGSLDGFGIRVAG
DASLWTWWMWLAFSLVLACCMVPVCCCLCRRIKNAPTKALKTTTHDERSG
SGDSDEVRSREWDSSELDLEDYSEYEDDEMKRDYDDADRSSEEPTSCSSS
NRLGRRSGQALIKETGKRSAWEQPVEASSRSPPGK
back to top

mRNA from alignment at H-elongata_contig15875:1928..5119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15875.3801.1 ID=mRNA_H-elongata_contig15875.3801.1|Name=mRNA_H-elongata_contig15875.3801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3192bp|location=Sequence derived from alignment at H-elongata_contig15875:1928..5119+ (Himanthalia elongata Himel1 dioecious)
TCGATTCCCGCGGCGGTTAGATCGCTATCGACGAAGCCGTGGCTACCTCG
ATTGGGTGGGCTCATCATCACCACGGCTACAGTTGTAATGACGGTGTTTC
AGGGTCCTAGCACCGCAAAATCGTCTCCCGTGGGATACCAGACCCTCTAC
GCGTCACGCGGCCAGAGTCTATCGATCCTCGGCGCTAATAGAATACTGCA
GGAGGAGGATGATATGGTCGACGAGCATCTCATCACGTACGACACTCAGC
TTCAGCTCTTCATGTGCAATCCAAGCCTGATCGAGGAGGGAAATGATGCT
TATCTTGTGGACAACGATCGCTTGGCTGTGGCGCTTTCAAGGGTCCTTGG
ACTGGGGCAGGTGATATATCCTTCGTAAAATCCGCAGATCCCGTTTTGGT
TCTAGATACAAGGTGTGAAGTCGTTATCCATTTTCCCTTTTTTCTTAAAA
AAATACTTGCATCATAATTATGTGAGGATTCAATCAAAATCAAATCAATC
AAAGGGTGCGATCCAGGGGACCAACTATCGTCAGGTTCGAAACGTACATT
ACTACCTTTGAGCACAAAATCGTCAGATGTGATCAATCTTGTTTTCCAAT
ATTACTAGTAAATTCATCAGGTCAACATGATCTCATTATTACCCCGTACA
CTTGCATTGGTCATCATGCAATATTATGTGGGGGCACGAAATGCACCAAA
TCATAGCTATGGCCTAGAGAGTGACTTGTGGAAAAGGGGATAAGTACGGT
AGTACTGTAATGTGGCGAACTGTGGGATATTATATAGTATGTTTGATTGA
TTGAAACTTCTATGCATTGCTAATACCTTCATAGCTTCTATATTGTCACT
TCCCCCCCCCCCCCCTCCCCCCTCCCCCTTCCCCCCCCCTCTTTTACTTA
TTTTCCCCCGCTTCCCCTCTCCTTAGTAACTTAGTATTAGAATTGTACAC
ATTCGAACCTGACGATAGTTAGTCCCCTGGACTGCACCTCTCATGGTGCT
AAAAAGGTGTGGATGTTCGCAGGGTTGGAAAAGGTTTTTTAAATATAAAC
AAAAACTCGAAAAAAGCGGAAAAAGTACTGCAAATAGATACTGTAAAAGG
TACCAGGGATACGCTAGAAAGGTGGTGGTAACGAATATTGGAGAAAAGGT
CAAGCAGGGTAATGTAAGGTAATGCCGCCAGGTTACCATGGAGGGTTACA
GCTATTAATAGTAAACACAAGAAAGCACCATGGAGGCGAAACAAATAACA
GCAGGGTCATGAATCAGGTGGAAGGTGAAAAAATAATTCCAACCCTCCGA
ACATCCACGCCTTCTTAGCACATGATAGGTGTAGTGTAATCCAGGGGGCC
AACTATCGTCAGGTTCGAATGTGTACAATACTAACTTTTAGACATATGTA
GTAAGTTCATTGGTAAAGAATGGTGAAAAAATAATAAGAAACCCTTGAAC
TCATTCCAACCCTCCAAACATCCACACCTTCTTAGCACCGTGAGAGGTGC
AGTCCAGGAGATCAACTATTGTCAGGTTCGAATGTGTACATTACTACCCT
CGAGCACAGAACCGTCATATGTGATAAGTCGTGGTTCCGTCCCCACTCAC
GGTATTGCGTAGTTAGTATTGAATACAGTACAGTATCGTGATGAATCAAT
GCTTCCTGTGGGACTTTTTTACCCTCCTTTGGTCGTACTCTTTGAAGTTG
TACACAACCCGTTTATTCCTTCTACTCTTGACAAGAGTCTCGTCAGCTTA
TCTAGGAGAGTTCGAAAGATGTAGTTGCATACGACGCTGCATTCGGTGGT
CAAGCCAACTTGATGACCTGATATATATATTTTTTAAAACGTTCAACAAG
TTTACCATGCATTGAAAAATCCTCCTTCCCTTCCGCCATTGCAATATGGA
ACATTTTCTCTGCTCCAGTCTGACACTGACGATATTGAGGTGACCATGAA
GACGGGGCCTCTAGATGCTGAGGATGATACGTACATGTGCGACACGGGTG
GCATGCTTCAGTGGCACGCCATGATTAACTACGACGCCGACGATGCGGCA
GTACTTGGCACAACGCCGGCTGTAATGGCTGCACAGGCTAACGACTACGT
CACCTACTCCAGCAATGACTTTAAAGCTCTCTTGAGCGCTTTCATCAACG
ATGAGGTAGGGCTGTGTTGCCCCAACTTTATTCCGGAGGGACACGGGCGG
GTACTCAGCGACCGTCTACAATGCAAACCGGACTTCTCAAACTCAGTAAA
CGTCAATGCTGCGCACACTCCGACCTCGTGTCTTATGTTAAACGTCTCCG
TGCAGTACGCGAGCGATGCTCAAGACGTGGACGTCGCCGCCTCGGTTATC
GTGGTCGGCACTCTAGGGTGGATCGTAACCTTTCCTGCGGAGACCACGAG
CGTTCGGGAGGCGGAAACTAGTGGAAGCTTGGATGGGTTCGGGATCCGGG
TGGCGGGTGATGCTAGTCTGTGGACCTGGTGGATGTGGCTGGCATTTTCC
CTCGTGCTGGCATGTTGCATGGTGCCCGTCTGTTGTTGTTTATGCAGGTG
AGAGATTGGACATCGACAGATGTTGACATTGTCGCTTTGTCGCGCAGCAA
TAATTGTAAGTAAGGTTGAACGTTTTGGTTGCTGTGGGCAACCTAACCGC
GAGCAAACATGGCAGCTCGAGCTACGAAAGCTTTTCAAAGCTAATGCTGT
AGTTGTGCGCTGTTTTTTTGGCAGAAGGATCAAGAATGCACCCACGAAGG
CACTTAAAACTACTACACACGACGAACGCAGCGGTAGTGGCGACTCCGAC
GAGGTCCGTAGCCGTGAATGGGACTCGAGTGAACTGGACTTGGAGGACTA
TAGTGAGTACGAGGATGATGAAATGAAAAGGGATTACGACGACGCCGATA
GGAGCTCGGAGGAGCCCACGTCATGCTCTTCGTCAAACCGGCTTGGGCGC
CGCAGCGGTCAAGCGCTCATAAAAGAGGTAGGCCCTGGTCAGCATTTCCC
TCTTTTATTCATCATTCATTGGTGTTGCCCCACAAGACAAGATTGCTTGG
GCATGTTCGATGGTTGAAAATAATGCGGCTTGCTCACTTCGTTTGGTTTA
CTTACGTGTGCTTGATCCCTATGAAACAGACGGGGAAGAGATCGGCGTGG
GAACAGCCTGTAGAGGCTTCATCAAGGAGCCCTCCCGGGAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15875:1928..5119+

>mRNA_H-elongata_contig15875.3801.1 ID=mRNA_H-elongata_contig15875.3801.1|Name=mRNA_H-elongata_contig15875.3801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2310bp|location=Sequence derived from alignment at H-elongata_contig15875:1928..5119+ (Himanthalia elongata Himel1 dioecious)
TCGATTCCCGCGGCGGTTAGATCGCTATCGACGAAGCCGTGGCTACCTCG
ATTGGGTGGGCTCATCATCACCACGGCTACAGTTGTAATGACGGTGTTTC
AGGGTCCTAGCACCGCAAAATCGTCTCCCGTGGGATACCAGACCCTCTAC
GCGTCACGCGGCCAGAGTCTATCGATCCTCGGCGCTAATAGAATACTGCA
GGAGGAGGATGATATGGTCGACGAGCATCTCATCACGTACGACACTCAGC
TTCAGCTCTTCATGTGCAATCCAAGCCTGATCGAGGAGGGAAATGATGCT
TATCTTGTGGACAACGATCGCTTGGCTGTGGCGCTTTCAAGGGTCCTTGG
ACTGGGGCAGTCGATTCCCGCGGCGGTTAGATCGCTATCGACGAAGCCGT
GGCTACCTCGATTGGGTGGGCTCATCATCACCACGGCTACAGTTGTAATG
ACGGTGTTTCAGGGTCCTAGCACCGCAAAATCGTCTCCCGTGGGATACCA
GACCCTCTACGCGTCACGCGGCCAGAGTCTATCGATCCTCGGCGCTAATA
GAATACTGCAGGAGGAGGATGATATGGTCGACGAGCATCTCATCACGTAC
GACACTCAGCTTCAGCTCTTCATGTGCAATCCAAGCCTGATCGAGGAGGG
AAATGATGCTTATCTTGTGGACAACGATCGCTTGGCTGTGGCGCTTTCAA
GGGTCCTTGGACTGGGGCAGTCTGACACTGACGATATTGAGGTGACCATG
AAGACGGGGCCTCTAGATGCTGAGGATGATACGTACATGTGCGACACGGG
TGGCATGCTTCAGTGGCACGCCATGATTAACTACGACGCCGACGATGCGG
CAGTACTTGGCACAACGCCGGCTGTAATGGCTGCACAGGCTAACGACTAC
GTCACCTACTCCAGCAATGACTTTAAAGCTCTCTTGAGCGCTTTCATCAA
CGATGAGTCTGACACTGACGATATTGAGGTGACCATGAAGACGGGGCCTC
TAGATGCTGAGGATGATACGTACATGTGCGACACGGGTGGCATGCTTCAG
TGGCACGCCATGATTAACTACGACGCCGACGATGCGGCAGTACTTGGCAC
AACGCCGGCTGTAATGGCTGCACAGGCTAACGACTACGTCACCTACTCCA
GCAATGACTTTAAAGCTCTCTTGAGCGCTTTCATCAACGATGAGTACGCG
AGCGATGCTCAAGACGTGGACGTCGCCGCCTCGGTTATCGTGGTCGGCAC
TCTAGGGTGGATCGTAACCTTTCCTGCGGAGACCACGAGCGTTCGGGAGG
CGGAAACTAGTGGAAGCTTGGATGGGTTCGGGATCCGGGTGGCGGGTGAT
GCTAGTCTGTGGACCTGGTGGATGTGGCTGGCATTTTCCCTCGTGCTGGC
ATGTTGCATGGTGCCCGTCTGTTGTTGTTTATGCAGTACGCGAGCGATGC
TCAAGACGTGGACGTCGCCGCCTCGGTTATCGTGGTCGGCACTCTAGGGT
GGATCGTAACCTTTCCTGCGGAGACCACGAGCGTTCGGGAGGCGGAAACT
AGTGGAAGCTTGGATGGGTTCGGGATCCGGGTGGCGGGTGATGCTAGTCT
GTGGACCTGGTGGATGTGGCTGGCATTTTCCCTCGTGCTGGCATGTTGCA
TGGTGCCCGTCTGTTGTTGTTTATGCAGAAGGATCAAGAATGCACCCACG
AAGGCACTTAAAACTACTACACACGACGAACGCAGCGGTAGTGGCGACTC
CGACGAGGTCCGTAGCCGTGAATGGGACTCGAGTGAACTGGACTTGGAGG
ACTATAGTGAGTACGAGGATGATGAAATGAAAAGGGATTACGACGACGCC
GATAGGAGCTCGGAGGAGCCCACGTCATGCTCTTCGTCAAACCGGCTTGG
GCGCCGCAGCGGTCAAGCGCTCATAAAAGAGAAGGATCAAGAATGCACCC
ACGAAGGCACTTAAAACTACTACACACGACGAACGCAGCGGTAGTGGCGA
CTCCGACGAGGTCCGTAGCCGTGAATGGGACTCGAGTGAACTGGACTTGG
AGGACTATAGTGAGTACGAGGATGATGAAATGAAAAGGGATTACGACGAC
GCCGATAGGAGCTCGGAGGAGCCCACGTCATGCTCTTCGTCAAACCGGCT
TGGGCGCCGCAGCGGTCAAGCGCTCATAAAAGAGACGGGGAAGAGATCGG
CGTGGGAACAGCCTGTAGAGGCTTCATCAAGGAGCCCTCCCGGGAAGACG
GGGAAGAGATCGGCGTGGGAACAGCCTGTAGAGGCTTCATCAAGGAGCCC
TCCCGGGAAG
back to top