mRNA_H-elongata_contig158653.3796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158653.3796.1
Unique NamemRNA_H-elongata_contig158653.3796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D8M2P3_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M2P3_BLAHO)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-8
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            REQ+K+ NP++K TEISKVLGE WK++  E K PY +  +ADKE+Y
Sbjct:   41 REQVKKENPELKLTEISKVLGEKWKELSEEEKKPYQDAYEADKEKY 86          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D7FLE3_ECTSI (ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.540e-8
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   10 IKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +K+ NPDMK TEISKVLG  W++MD   KAP+ ++A  DK RY
Sbjct:   11 VKQENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKARY 53          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A6H5JHH0_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   10 IKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +KE NPDMK TEISK+LG  W++MD   KAP+ ++A  DK RY
Sbjct:   51 VKEENPDMKVTEISKLLGARWREMDDNDKAPFQKKADKDKARY 93          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.540e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R Q+K  NP++K TEISKVLGE W K+D   K PY ++A  DK RY
Sbjct:  568 RAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARY 613          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A5J4WWR1_9EUKA (HMG box domain-containing protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WWR1_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 1.110e-6
Identity = 22/46 (47.83%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            +E++K+  P++K T++ K +G+ WK++  E KAPYTE+A+ DKERY
Sbjct:  103 KEELKKETPELKDTDLVKKIGKLWKELSDEDKAPYTEKAEKDKERY 148          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A077WA23_9FUNG (HMG box domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WA23_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 1.640e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R ++KE NPD     + K+LGE WK M  E KAPYT +A+ DK+RY
Sbjct:   41 RPKVKEENPDASFGTLGKILGEKWKAMSDEEKAPYTAKAEEDKKRY 86          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A8H7SBX4_9FUNG (HMG box domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SBX4_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 2.470e-6
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R QIKE NPD     I K+LG+ WK M  + KAPY  +A ADKERY
Sbjct:   44 RAQIKEDNPDASFGTIGKLLGDKWKNMTDDDKAPYVAKANADKERY 89          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A099NXP6_PICKU (Non-histone chromosomal protein 6 n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099NXP6_PICKU)

HSP 1 Score: 47.8 bits (112), Expect = 1.010e-5
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R+ ++  NP +   +I K+LGE WK MDAE +AP+ ++A+ADK+RY
Sbjct:   35 RDVVRAENPGIAFGQIGKLLGEKWKSMDAEKRAPFEQQAEADKKRY 80          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A7S3WG03_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WG03_9SPIT)

HSP 1 Score: 49.3 bits (116), Expect = 1.400e-5
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            R+ I +ANP+ K  ++ K LGE W+KM  E KAPY  + +ADKERY
Sbjct:  134 RQGIMQANPNYKMIDVGKELGERWRKMSDEEKAPYMAKQKADKERY 179          
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Match: A0A6P5YH67_DURZI (FACT complex subunit SSRP1 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YH67_DURZI)

HSP 1 Score: 49.3 bits (116), Expect = 1.600e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 REQIKEANPDMKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY 138
            RE +K++NP    TE+S++LGE WKK+  E K PY  +A+ D++RY
Sbjct:  447 RENLKKSNPGASFTEVSRILGEKWKKLSEEEKEPYEAKAKLDRKRY 492          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8M2P3_BLAHO1.270e-858.70Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
D7FLE3_ECTSI7.540e-858.14ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) t... [more]
A0A6H5JHH0_9PHAE1.780e-758.14HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
D7FLF8_ECTSI9.540e-756.52FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sili... [more]
A0A5J4WWR1_9EUKA1.110e-647.83HMG box domain-containing protein n=1 Tax=Streblom... [more]
A0A077WA23_9FUNG1.640e-652.17HMG box domain-containing protein n=2 Tax=Lichthei... [more]
A0A8H7SBX4_9FUNG2.470e-656.52HMG box domain-containing protein n=1 Tax=Mucor ci... [more]
A0A099NXP6_PICKU1.010e-547.83Non-histone chromosomal protein 6 n=1 Tax=Pichia k... [more]
A0A7S3WG03_9SPIT1.400e-552.17Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A6P5YH67_DURZI1.600e-547.83FACT complex subunit SSRP1 n=1 Tax=Durio zibethinu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158653contigH-elongata_contig158653:180..317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-00_005550.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size108
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.3829544-UTR-H-elongata_contig158653:179..2091622929934.3829544-UTR-H-elongata_contig158653:179..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158653 180..209 +
1691679213.7472162-UTR-H-elongata_contig158653:179..2091691679213.7472162-UTR-H-elongata_contig158653:179..209Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158653 180..209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.3973653-CDS-H-elongata_contig158653:209..3171622929934.3973653-CDS-H-elongata_contig158653:209..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158653 210..317 +
1691679213.7580056-CDS-H-elongata_contig158653:209..3171691679213.7580056-CDS-H-elongata_contig158653:209..317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158653 210..317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158653.3796.1prot_H-elongata_contig158653.3796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158653 210..317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158653.3796.1

>prot_H-elongata_contig158653.3796.1 ID=prot_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY
back to top

mRNA from alignment at H-elongata_contig158653:180..317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158653.3796.1 ID=mRNA_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig158653:180..317+ (Himanthalia elongata Himel1 dioecious)
CGCGAACAGATCAAGGAAGCCAATCCTGACATGAAGCCCACGGAGATAAG CAAGGTTTTGGGAGAGACTTGGAAAAAGATGGATGCAGAGGCTAAGGCTC CATACACAGAGCGTGCACAGGCTGACAAAGAACGGTAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig158653:180..317+

>mRNA_H-elongata_contig158653.3796.1 ID=mRNA_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig158653:180..317+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCCCACGGAGATAAGCAAGGTTTTGGGAGAGACTTGGAAAAAGAT
GGATGCAGAGGCTAAGGCTCCATACACAGAGCGTGCACAGGCTGACAAAG
AACGGTACATGAAGCCCACGGAGATAAGCAAGGTTTTGGGAGAGACTTGG
AAAAAGATGGATGCAGAGGCTAAGGCTCCATACACAGAGCGTGCACAGGC
TGACAAAGAACGGTAC
back to top