mRNA_H-elongata_contig15863.3794.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15863.3794.1
Unique NamemRNA_H-elongata_contig15863.3794.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: D8LLC3_ECTSI (3-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC3_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.710e-36
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            ESGLS E+VGYVNAHATSTPLGDAAE RAIE+VFG+ RQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHT+NL
Sbjct:  324 ESGLSPESVGYVNAHATSTPLGDAAEGRAIERVFGK-RQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTLNL 402          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A7R9VUQ5_9CHLO (Beta-ketoacyl-[acyl-carrier-protein] synthase I n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VUQ5_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 7.650e-26
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    4 SGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLL-VSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            SG+S + V Y+NAHATSTPLGD  E RAI +VFGRS  + L VSSTKGATGHLLGAAG++EA F++LALRDG+ P TVNL
Sbjct:  205 SGVSVDDVAYINAHATSTPLGDEVEQRAILRVFGRSHVACLAVSSTKGATGHLLGAAGAVEALFTVLALRDGLAPPTVNL 284          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A067C6H8_SAPPC (Ketoacyl-synt_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C6H8_SAPPC)

HSP 1 Score: 100 bits (249), Expect = 1.460e-25
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            +SGL+   +GY+NAHATSTPLGDAAE RAI+++FG    +L VSSTKGA GHLLGAAG++EA F+I A+ + V+P T+NL
Sbjct:    7 QSGLALSDIGYINAHATSTPLGDAAENRAIKRLFGSHAYNLGVSSTKGAVGHLLGAAGAIEAIFAIKAMHESVLPPTLNL 86          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: UPI001E1D2875 (LOW QUALITY PROTEIN: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2875)

HSP 1 Score: 106 bits (264), Expect = 2.640e-25
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   10 LSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            L  E+VGYVNAHATSTPLGD AE RAI K+FGR    LL+SSTKGATGHLLGAAGSLEA  ++LA + G VP TVNL
Sbjct:  313 LEPESVGYVNAHATSTPLGDKAESRAIFKLFGRHCDKLLISSTKGATGHLLGAAGSLEAMLTVLACQSGKVPPTVNL 389          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A3M1S424_9GAMM (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1S424_9GAMM)

HSP 1 Score: 105 bits (262), Expect = 4.040e-25
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            ++GL A  VGYVNAH TST LGD AE RAI++VFG + Q LLVSSTK  TGHLLGAAG +EA FS+LALRD  VP T+NL
Sbjct:  291 DAGLDAGDVGYVNAHGTSTQLGDIAETRAIKRVFGAAAQDLLVSSTKSTTGHLLGAAGGIEAVFSVLALRDQRVPPTINL 370          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A2D7FNE5_9HYPH (3-oxoacyl-[acyl-carrier-protein] synthase 2 n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D7FNE5_9HYPH)

HSP 1 Score: 105 bits (262), Expect = 4.360e-25
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    4 SGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            SGLS E +GYVNAH TSTPLGD  E++A+E++FG +   L +SSTK A GHLLGAAG++EA FS+LA+RDG+VP T+NL
Sbjct:  299 SGLSPEDIGYVNAHGTSTPLGDEIELKAVERLFGGAADGLNMSSTKSAIGHLLGAAGAVEAIFSVLAIRDGIVPPTLNL 377          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: UPI0019CEF34F (Beta-ketoacyl-ACP synthase II n=1 Tax=Rhizobiaceae bacterium TaxID=1913961 RepID=UPI0019CEF34F)

HSP 1 Score: 99.4 bits (246), Expect = 8.420e-25
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            ++G+S + VGY+NAH TSTP+GD  E+RAIE++ G +   +L+SSTK A GHLLGAAGS+EA F +LA+RD V P T+NL
Sbjct:   31 DAGISPDDVGYINAHGTSTPMGDELELRAIERLLGDAADGMLMSSTKSAVGHLLGAAGSVEAIFCLLAIRDNVAPPTLNL 110          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A5N3PAG4_9HYPH (Beta-ketoacyl-ACP synthase II (Fragment) n=1 Tax=Microvirga brassicacearum TaxID=2580413 RepID=A0A5N3PAG4_9HYPH)

HSP 1 Score: 100 bits (249), Expect = 8.600e-25
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    7 GLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            G+SA  + YVNAH TSTPLGD  E++A+E+V G +   L +SSTK A GHLLGAAG++EA FSILA+RDG+VP T+NL
Sbjct:   76 GISASEIDYVNAHGTSTPLGDELELKAVERVVGNAAGKLTMSSTKSAIGHLLGAAGAVEAIFSILAIRDGIVPPTLNL 153          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: A0A812C539_SEPPH (3-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812C539_SEPPH)

HSP 1 Score: 104 bits (260), Expect = 9.100e-25
Identity = 51/73 (69.86%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   22 TVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            +V Y+NAHATSTPLGDAAE++AI ++FG   + L +SSTKGATGHLLGAAGSLEA FSILAL  G +P T+NL
Sbjct:  309 SVSYINAHATSTPLGDAAEIKAIRRLFGSHSKELFISSTKGATGHLLGAAGSLEAIFSILALHTGTIPPTINL 381          
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Match: UPI001B8C6EC6 (beta-ketoacyl-ACP synthase II n=1 Tax=Chloracidobacterium validum TaxID=2821543 RepID=UPI001B8C6EC6)

HSP 1 Score: 104 bits (259), Expect = 1.080e-24
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGATGHLLGAAGSLEAAFSILALRDGVVPHTVNL 240
            ++G++   VGY+NAHATSTP GDAAE RAI +VFG +  SL VSSTK  TGHLLGAAG+LEAA ++LALRDG +P T+NL
Sbjct:  290 DAGIAPAEVGYLNAHATSTPAGDAAEARAIRQVFGDAVSSLAVSSTKSMTGHLLGAAGALEAAITVLALRDGRIPPTINL 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15863.3794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC3_ECTSI4.710e-3691.253-oxoacyl-[acyl-carrier-protein] synthase n=2 Tax=... [more]
A0A7R9VUQ5_9CHLO7.650e-2670.00Beta-ketoacyl-[acyl-carrier-protein] synthase I n=... [more]
A0A067C6H8_SAPPC1.460e-2562.50Ketoacyl-synt_C domain-containing protein n=1 Tax=... [more]
UPI001E1D28752.640e-2572.73LOW QUALITY PROTEIN: 3-oxoacyl-[acyl-carrier-prote... [more]
A0A3M1S424_9GAMM4.040e-2568.753-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Ta... [more]
A0A2D7FNE5_9HYPH4.360e-2564.563-oxoacyl-[acyl-carrier-protein] synthase 2 n=4 Ta... [more]
UPI0019CEF34F8.420e-2558.75Beta-ketoacyl-ACP synthase II n=1 Tax=Rhizobiaceae... [more]
A0A5N3PAG4_9HYPH8.600e-2562.82Beta-ketoacyl-ACP synthase II (Fragment) n=1 Tax=M... [more]
A0A812C539_SEPPH9.100e-2569.863-oxoacyl-[acyl-carrier-protein] synthase n=1 Tax=... [more]
UPI001B8C6EC61.080e-2466.25beta-ketoacyl-ACP synthase II n=1 Tax=Chloracidoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15863contigH-elongata_contig15863:1722..2847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.0
Seed ortholog evalue1e-21
Seed eggNOG ortholog634499.EpC_21460
Preferred namefabF
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
GOsGO:0003674,GO:0003824,GO:0004312,GO:0004315,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0032787,GO:0033817,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901576
EggNOG free text desc.Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
EggNOG OGs1MU1X@1224,1RMDE@1236,3X4SS@551,COG0304@1,COG0304@2
Ec32 ortholog descriptionbeta-ketoacyl synthase
Ec32 orthologEc-27_002090.1
EC2.3.1.179
COG Functional cat.I
BiGG ReactioniAF1260.b1095,iAPECO1_1312.APECO1_176,iB21_1397.B21_01099,iBWG_1329.BWG_0943,iE2348C_1286.E2348C_1187,iEC042_1314.EC042_1165,iEC55989_1330.EC55989_1207,iECABU_c1320.ECABU_c13085,iECBD_1354.ECBD_2506,iECB_1328.ECB_01091,iECDH10B_1368.ECDH10B_1167,iECDH1ME8569_1439.ECDH1ME8569_1030,iECD_1391.ECD_01091,iECED1_1282.ECED1_1238,iECH74115_1262.ECH74115_1474,iECIAI1_1343.ECIAI1_1130,iECIAI39_1322.ECIAI39_2066,iECO103_1326.ECO103_1140,iECO111_1330.ECO111_1372,iECO26_1355.ECO26_1428,iECOK1_1307.ECOK1_1202,iECP_1309.ECP_1087,iECS88_1305.ECS88_1109,iECSE_1348.ECSE_1159,iECSF_1327.ECSF_0994,iECSP_1301.ECSP_1396,iECUMN_1333.ECUMN_1270,iECW_1372.ECW_m1203,iECs_1301.ECs1473,iEKO11_1354.EKO11_2739,iETEC_1333.ETEC_1160,iEcDH1_1363.EcDH1_2552,iEcE24377_1341.EcE24377A_1216,iEcSMS35_1347.EcSMS35_2032,iG2583_1286.G2583_1355,iJO1366.b1095,iJR904.b1095,iLF82_1304.LF82_0607,iNRG857_1313.NRG857_05280,iSF_1195.SF1099,iSFxv_1172.SFxv_1251,iS_1188.S1179,iUMN146_1321.UM146_11850,iWFL_1372.ECW_m1203,iY75_1357.Y75_RS05720,iZ_1308.Z1734,ic_1306.c1365
Best tax levelErwinia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons3
Model size240
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15863.3794.1prot_H-elongata_contig15863.3794.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15863 1722..2847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.2733378-CDS-H-elongata_contig15863:1721..17891622929934.2733378-CDS-H-elongata_contig15863:1721..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 1722..1789 -
1691679213.7056618-CDS-H-elongata_contig15863:1721..17891691679213.7056618-CDS-H-elongata_contig15863:1721..1789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 1722..1789 -
1622929934.2873716-CDS-H-elongata_contig15863:2204..22661622929934.2873716-CDS-H-elongata_contig15863:2204..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 2205..2266 -
1691679213.717894-CDS-H-elongata_contig15863:2204..22661691679213.717894-CDS-H-elongata_contig15863:2204..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 2205..2266 -
1622929934.3031526-CDS-H-elongata_contig15863:2737..28471622929934.3031526-CDS-H-elongata_contig15863:2737..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 2738..2847 -
1691679213.7271566-CDS-H-elongata_contig15863:2737..28471691679213.7271566-CDS-H-elongata_contig15863:2737..2847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15863 2738..2847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15863.3794.1

>prot_H-elongata_contig15863.3794.1 ID=prot_H-elongata_contig15863.3794.1|Name=mRNA_H-elongata_contig15863.3794.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
ESGLSAETVGYVNAHATSTPLGDAAEMRAIEKVFGRSRQSLLVSSTKGAT
GHLLGAAGSLEAAFSILALRDGVVPHTVNL
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mRNA from alignment at H-elongata_contig15863:1722..2847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15863.3794.1 ID=mRNA_H-elongata_contig15863.3794.1|Name=mRNA_H-elongata_contig15863.3794.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig15863:1722..2847- (Himanthalia elongata Himel1 dioecious)
GAATCGGGGCTTTCCGCGGAAACCGTCGGTTACGTCAACGCGCACGCGAC TTCTACCCCTCTCGGTGACGCCGCGGAAATGCGAGCGATCGAGAAAGTTT TCGGCCGAAGGTGATATTCCGTCTGCGAGGGCGGCAGGGTTCGGCACCCT GTTGGTAGTGCAAACCCGCGCCCTCTCCCTTTCCCTTTTTTGGAAGGCTG CTGTTGAACCGGGTTCGTTTTTCGACAACTGTCGGGCAGCCGAACACGGA GATCCAACGACGACGGTTGCGCCGTGTCGGTTGGACACGCTGCCATTATG ACATGGCCTTGCGGGAGGTGCGCGCGAGTTCGTTTGGGCGATGATGAATC ACACCGCCGCGTTCGCCGCTCAAGACCTTTAGGCAGGCGTTGACCTGGAT CACCAGGTCCGTCGGGAGCGCTTTTCAGCGCATGGCATCGTATCTGGTTG TACTAGACCCTGAATGGGTAAAGAACTGTGGCGGCATTTTGCTGCCAGAG GCCAAGGAACAACCTTCGCTGCGGCCGTCTCGGCGATGATCTTACTATCC GACTAATCTCCGGCGCGCTTCTCCATAACAGCAGGCAATCACTTTTAGTA TCTTCTACTAAGGGGGCGACGGGCCACCTACTCGGGGCCGCGGGTGAGGA CGGCGTTTTTGACCCTTCCTCACGACTCCGTGTTCATTACAGTTTCGCTT GTAAAGTCCGGTGAAGCTAGGATTCCTTATAAACGCCCGCTGTGCCAGCG TTCCTTTTGGATAACCCTCGAATCTTGGCTTAAACAAGACCGCGGCGCAT CCCCTCGTAGCCTGTGTAACGGGAAAATATTTGGTCAATTTTCAAATTAA TTTTACAACCCCTTTTTATTATTAAATGCACGACAACTAGAAACTTCCAC CACAACAAATCAAATTAACGCTCCAGGGAAATCAGCAACACATTAAATCA AGAACAGGCAACGCATGCTTTTGCTAGGCAGCGTGTATTTGCTTGGCTTT GGAGTAAGCTCCACGGTACCGTCGTCGTTTTGCCCGGTGATGATTTTCGC TGCCACAGGATCTCTCGAGGCGGCCTTCTCCATTCTTGCCCTACGGGACG GTGTGGTGCCGCACACCGTCAACCTG
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Coding sequence (CDS) from alignment at H-elongata_contig15863:1722..2847-

>mRNA_H-elongata_contig15863.3794.1 ID=mRNA_H-elongata_contig15863.3794.1|Name=mRNA_H-elongata_contig15863.3794.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig15863:1722..2847- (Himanthalia elongata Himel1 dioecious)
GAATCGGGGCTTTCCGCGGAAACCGTCGGTTACGTCAACGCGCACGCGAC
TTCTACCCCTCTCGGTGACGCCGCGGAAATGCGAGCGATCGAGAAAGTTT
TCGGCCGAAGGAATCGGGGCTTTCCGCGGAAACCGTCGGTTACGTCAACG
CGCACGCGACTTCTACCCCTCTCGGTGACGCCGCGGAAATGCGAGCGATC
GAGAAAGTTTTCGGCCGAAGCAGGCAATCACTTTTAGTATCTTCTACTAA
GGGGGCGACGGGCCACCTACTCGGGGCCGCGGCAGGCAATCACTTTTAGT
ATCTTCTACTAAGGGGGCGACGGGCCACCTACTCGGGGCCGCGGGATCTC
TCGAGGCGGCCTTCTCCATTCTTGCCCTACGGGACGGTGTGGTGCCGCAC
ACCGTCAACCTGGATCTCTCGAGGCGGCCTTCTCCATTCTTGCCCTACGG
GACGGTGTGGTGCCGCACACCGTCAACCTG
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