mRNA_H-elongata_contig15848.3789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15848.3789.1
Unique NamemRNA_H-elongata_contig15848.3789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: D7FQ53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ53_ECTSI)

HSP 1 Score: 275 bits (704), Expect = 1.890e-86
Identity = 127/209 (60.77%), Postives = 162/209 (77.51%), Query Frame = 2 
Query:  440 RMQWFEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSDSEAEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKDEKRMIPRDPPRAQKLLEKGCSYDHVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTEKLDALYRALGGNRQS 1066
            RM+ FE+DCN GKGNA ACHQV E+LSV+K DF KAG+++  NC TR+H PSCF  G+ LL G+G+ QSD++AEK F SAC KDHQPACLHLG MH+ GG GFK+D+KKA +V D+SC+ G+ DSCN+LAKQLLR D K  +PRDPPRA+ LLEKGCS++H  SC NL VM   GD+ VP D+ KYR++ ++TE L A  + + GN+Q+
Sbjct:   14 RMRTFESDCNDGKGNAVACHQVGEYLSVVKNDFDKAGRIFEANCNTRNHAPSCFNLGRFLLAGKGLPQSDAQAEKVFDSACGKDHQPACLHLGFMHLYGGEGFKRDIKKAIEVLDTSCSGGLADSCNMLAKQLLRHDGKGPVPRDPPRARGLLEKGCSHNHGPSCFNLTVMLKKGDEGVPSDYKKYREYREKTESLAAQLQGIDGNKQA 222
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BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: W7TNA5_9STRA (Hcp beta-lactamase-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNA5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.530e-34
Identity = 78/200 (39.00%), Postives = 107/200 (53.50%), Query Frame = 2 
Query:  440 RMQWFEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSDSEAEKFFASACEKDHQPACLHLGLMHV---TGGVGFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRK-DEKRMIPRDPPRAQKLLEKGCSYDHVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTEKL 1027
            RM  FE DC+KGKG+A ACH V EFL+V+K D+ KA K+Y  NC    H PSCF  G+  L GRG+ QSD+ + K F ++C+  H  AC H+GL+ +    GG    +D+KKA  + + +C EG+ DSC  LA  LLR   E +                           LAVM+  GD  +P +  ++ K+   TE L
Sbjct:   15 RMLAFEMDCDKGKGDAWACHSVGEFLAVVKGDYNKAAKVYTDNCAKYSHPPSCFNLGRLYLGGRGVPQSDTRSLKCFDTSCKAGHGMACHHMGLLLLYGKDGGYDVSKDVKKATGILNKACGEGIPDSCYALASHLLRHLPEDKSHXXXXXXXXXXXXXXXXXXXXXXXXXLAVMHKKGDTGIPRNEQEFEKYKKVTEDL 214
[Close]
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A7S3K066_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K066_9STRA)

HSP 1 Score: 129 bits (325), Expect = 9.120e-31
Identity = 78/222 (35.14%), Postives = 117/222 (52.70%), Query Frame = 2 
Query:  458 ADC-NKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSDSEAEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLR---KDE------KRMIP---------RDPPRAQKLLEKGCSYDHVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTEKLDALYRALGGNRQS 1066
            ADC +K KG+  ACH V EF +V+++D+ KA + Y  NC  R H  SCF  G+ LL G+G    +  A + F+ AC+    PAC HLGL+ +        D +K  +  + +C+    +SC ++  +LL+    DE      +R++P         RD PRAQ  LE  C   H  +CHNLAV++  GDD V  +  K+ ++  +T +L     A+ G R S
Sbjct:   22 ADCIDKDKGSGDACHAVGEFFAVIRKDYVKARESYATNCDIRSHSASCFNLGRLLLGGQGGGIDEKGAARRFSQACDNGFGPACHHLGLIAIDA-----DDYRKGYRALERACSFREAESCYIIGSRLLKAAQNDEETSFFQRRIVPWFSTTNHFTRDVPRAQACLEIACDEGHAPACHNLAVLFKHGDDQVLSNETKHLEYKKKTLELVKAAGAMQGVRIS 238
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BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A7S2DAY3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAY3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.130e-22
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 2 
Query:  440 RMQWFEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDH-GPSCFRFGQSLLTGRGMMQSDSEAEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQ 775
            RM  FE DCN GKG   ACH V EF +V+ +D   A K+  +NC  ++H GPSCF+ G+ LLTG+G+ Q+D+ AE+ F SAC+     AC HLG + + G    K+D ++A +
Sbjct:   16 RMLQFEIDCNDGKGTGYACHSVGEFHAVVNKDHASAAKVLELNCDGKNHYGPSCFKLGRLLLTGKGVGQTDAGAERRFMSACDLGVTQACHHLGSLLLEGSAEVKRDPERAHK 128
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BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A1Z5KC79_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC79_FISSO)

HSP 1 Score: 104 bits (259), Expect = 4.760e-21
Identity = 81/263 (30.80%), Postives = 117/263 (44.49%), Query Frame = 2 
Query:  407 AILVHSVATPIRMQW--FEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNC---------------RTRDHGPSCFRFGQSLLTGRGMMQSD-SEAEKFFASACEKDHQPACLHLG--LMHVTGGVG--FKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLR----------------------------KDEKRM-------IPRDPPRAQKLLEKGC-SYDHVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTE 1021
            A L H +    R Q   ++  C+ GKG   AC   AE+LS+ ++  K+A  +Y   C                T  + P C+  G+ L+TG+G++Q D  EA +    AC  +H  AC      L    G +G     D  KA +++  +C +G   SC  LA  LLR                            +D +R+       IPR+P RA+KLLE  C +  H++SCHNLAVMY  GDD V  D  K  ++   T+
Sbjct:   41 AELPHIIDDESRQQVEDYKQACDDGKGPMVACFSTAEYLSLFERKHKEAADLYRNVCFRPKEDKSPNRMLVDGTMAYPPGCYNLGKMLMTGKGVVQYDRDEAYRLLDRACRGEHGGACYLQAQILCSRPGSLGKNIPHDPHKAMELYQKTCDQGDSISCYTLATMLLRGDRVSKSANNVSPQEARGEAPLLKRENEEDRRRVPEQDPYVIPRNPKRAEKLLEHACRTGSHITSCHNLAVMYTHGDDGVDPDPEKAEQYKKMTQ 303
[Close]
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A0B7AKJ2_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AKJ2_9EUPU)

HSP 1 Score: 99.8 bits (247), Expect = 3.710e-20
Identity = 52/163 (31.90%), Postives = 90/163 (55.21%), Query Frame = 2 
Query:  485 ATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSDSE---AEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKDEKRMIPRDPPRAQKLLEKGCSYDHVSSCHNLAVMYMLG 964
            A  CH++AEF   +K+D + A  +Y  NC TR +  SC+++GQSLL GRG+  +  +   A K++  +C+ D    C     +  +  VG +Q ++KA  ++  +CA   G++C  L+   LR +    + +D  RA +  +  C  D+  +C+NL++MY  G
Sbjct:   35 ADGCHRLAEFRENIKRDVEAAVPLYKDNCDTRQYPKSCYKYGQSLLKGRGIPDNKPDYLSALKYYEKSCDLDCPEGCFVAAQLRTSNNVGTEQSIEKAMPLYSKACALKDGEACFKLSTFYLRGE---FVDKDLKRAYEFAKTSCEMDNFMACNNLSLMYRHG 194
[Close]
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A7S4AG49_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AG49_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.050e-18
Identity = 79/254 (31.10%), Postives = 107/254 (42.13%), Query Frame = 2 
Query:  464 CNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNC---------------RTRDHGPSCFRFGQSLLTGRGMMQSDSE-AEKFFASACEKDHQPACLHLG---LMHVTGGVG--FKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKD-----------------------------------EKRMIPRDPPRAQKLLEKGCSYD-HVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTEKLDALYRALGG 1054
            CN GKG   AC    EFLS+ +Q   +A K++   C                 + + P+CF   + L+TG+G +  D + A   F  AC   H  AC H+    L+   G +G     D  KA +++   C  G   SC  LA  LLR D                                   +   IPRDP RA++LL+  C    H  SC NLAVMY  GDD VP+D  K  ++  +TEK     + LGG
Sbjct:   80 CNNGKGPMVACFATGEFLSMFEQKHMEAFKLFENTCFRPLGDKSPNGKEVDGKKAYPPACFNLAKMLMTGKGGVPVDRKRAYDVFDRACRAGHGGAC-HIQAKMLLSPPGALGKDIPYDPFKAMELYQGVCDLGDSVSCFTLAAMLLRGDKINKLAINASPEELQGKEPVKQRSNEDDRSAKADEDFEYIPRDPKRAEQLLQAACRTGAHAPSCFNLAVMYQNGDDGVPVDPTKAEEYKKKTEKA---VQTLGG 329
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BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: B7FT62_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT62_PHATC)

HSP 1 Score: 93.2 bits (230), Expect = 3.810e-17
Identity = 74/254 (29.13%), Postives = 109/254 (42.91%), Query Frame = 2 
Query:  452 FEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNC--RTRDHGPS-------------CFRFGQSLLTGRGMMQSD-SEAEKFFASACEKDHQPACLHLGLMHVT-----GGV--GFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKDEKR------------------------------------MIPRDPPRAQKLLEKGCSY-DHVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRT-EKLD 1030
            ++  C+ G+G   AC    E+LS+ ++  + A ++Y   C     D  P+             CF   + L+TG+G + +D + A + F  AC   H  AC     +  T     GG   G   D  KA  ++  +C +G   SC  LA  LLR D+                                      ++PR+P RA+ LL + C+   HV+SCHNLAVMY  GDD VP D  K   +  +T EK+D
Sbjct:   66 YKQACDDGRGPLVACFATGEYLSLFERQHRAAAELYENVCFRPKNDKSPNGVLIDHTIAYPAGCFNLAKMLMTGKGGVPADRARAYQLFDRACRGKHGGACYLQAQILCTRPDALGGPHSGIPHDPVKAMALYQDNCDDGDSISCYTLAAMLLRGDKVNKTADNVSPQEARGLAPLVQREHEPDRTREPARDVPYVVPRNPARARDLLHQACTTGSHVTSCHNLAVMYTHGDDGVPADAEKAEYYKQKTQEKID 319
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BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A1E7FBD2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBD2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.470e-16
Identity = 74/244 (30.33%), Postives = 101/244 (41.39%), Query Frame = 2 
Query:  464 CNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNC---------------RTRDHGPSCFRFGQSLLTGRGMMQSDSE-AEKFFASACEKDHQPACLHLG---LMHVTGGVG--FKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKD-----------------------------------EKRMIPRDPPRAQKLLEKGCSYD-HVSSCHNLAVMYMLGDDDVPIDHLKYRKFMDRTEK 1024
            CN GKG   AC   AEFLS+ ++  ++A  ++   C                T+ + P+CF   + L+TG+G +  D + A   F   C   H  AC H+    L+   G +G     D  KA  ++   C  G   SC  LA  LLR D                                   +   IPRDP RA+ LL+  C    H  SC NLAVMY  GDD VP D  K  ++  +TE+
Sbjct:   62 CNDGKGAMVACFATAEFLSMFERKHQEAFDLFENTCFRPYKDKSSNGIEVDGTKAYPPACFNLAKMLMTGKGGVTVDRKRAYDVFDRGCRAGHGGAC-HIQAKMLLSPPGALGKDIPYDPFKAMDLYQDVCDLGDSVSCFTLATMLLRGDKINKQARNATPAEVRGEEPVMQRTNEDDRSANAAEDFEYIPRDPKRAEALLQSACRTGAHAPSCFNLAVMYENGDDGVPKDSEKAEEYKKKTEQ 304
[Close]
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Match: A0A3S1CEL7_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1CEL7_ELYCH)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-8
Identity = 47/197 (23.86%), Postives = 84/197 (42.64%), Query Frame = 2 
Query:  374 KRHRLAHEPHTAILVHSVATPIRMQWFEADCNKGKGNATACHQVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSDSEAEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQVFDSSCAEGMGDSCNLLAKQLLRKDEKRMIPRDPPRAQKLLEKGCSYDHVSSCHNLAVMYMLG 964
            + + L  E  T   +  V    + Q F+     G      CH++AEF   ++++   AG ++  NC ++++  SC+++GQ LLTG+G+                                   G K D+  A Q ++ SC  G+   C   A+  LR  +K     +  +A  LL+K C+     +C+ L+  Y++G
Sbjct:    3 RSYDLTDEKQTKEYLRDVEIEYQFQCFDQKEPDG------CHRLAEFRENVRKNVDAAGPLFKENCDSKNYPKSCYKYGQCLLTGKGV----------------------------------PGNKVDLISALQYYEKSCDLGLAGGCFNAAQ--LRMTDKAKSQANVDKAVALLDKACNLKDGEACYRLSAFYLMG 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15848.3789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQ53_ECTSI1.890e-8660.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TNA5_9STRA5.530e-3439.00Hcp beta-lactamase-like protein n=2 Tax=Monodopsid... [more]
A0A7S3K066_9STRA9.120e-3135.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2DAY3_9STRA4.130e-2245.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KC79_FISSO4.760e-2130.80Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A0B7AKJ2_9EUPU3.710e-2031.90Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
A0A7S4AG49_9STRA2.050e-1831.10Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B7FT62_PHATC3.810e-1729.13Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FBD2_9STRA6.470e-1630.33Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A3S1CEL7_ELYCH2.250e-823.86Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15848contigH-elongata_contig15848:885..5262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue6.7e-72
Seed eggNOG ortholog2880.D7FQ53
Preferred nameCOA7
KEGG rclassRC00063,RC02819
KEGG koko:K00772,ko:K18180
KEGG ReactionR01402
KEGG Pathwayko00270,ko01100,ko04714,map00270,map01100,map04714
KEGG ModuleM00034
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Sel1 repeat
EggNOG OGsCOG0790@1,KOG4014@2759
EC2.4.2.28
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size1629
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.9798646-UTR-H-elongata_contig15848:884..14381622929933.9798646-UTR-H-elongata_contig15848:884..1438Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 885..1438 -
1691679213.553216-UTR-H-elongata_contig15848:884..14381691679213.553216-UTR-H-elongata_contig15848:884..1438Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 885..1438 -
1622929934.0849564-UTR-H-elongata_contig15848:4913..52621622929934.0849564-UTR-H-elongata_contig15848:4913..5262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 4914..5262 -
1691679213.63548-UTR-H-elongata_contig15848:4913..52621691679213.63548-UTR-H-elongata_contig15848:4913..5262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 4914..5262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.0003674-CDS-H-elongata_contig15848:1438..15321622929934.0003674-CDS-H-elongata_contig15848:1438..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 1439..1532 -
1691679213.5659232-CDS-H-elongata_contig15848:1438..15321691679213.5659232-CDS-H-elongata_contig15848:1438..1532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 1439..1532 -
1622929934.0165544-CDS-H-elongata_contig15848:1881..21081622929934.0165544-CDS-H-elongata_contig15848:1881..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 1882..2108 -
1691679213.5780272-CDS-H-elongata_contig15848:1881..21081691679213.5780272-CDS-H-elongata_contig15848:1881..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 1882..2108 -
1622929934.033101-CDS-H-elongata_contig15848:2633..27161622929934.033101-CDS-H-elongata_contig15848:2633..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 2634..2716 -
1691679213.5976298-CDS-H-elongata_contig15848:2633..27161691679213.5976298-CDS-H-elongata_contig15848:2633..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 2634..2716 -
1622929934.0504408-CDS-H-elongata_contig15848:4236..42871622929934.0504408-CDS-H-elongata_contig15848:4236..4287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 4237..4287 -
1691679213.6082377-CDS-H-elongata_contig15848:4236..42871691679213.6082377-CDS-H-elongata_contig15848:4236..4287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 4237..4287 -
1622929934.0686889-CDS-H-elongata_contig15848:4642..49131622929934.0686889-CDS-H-elongata_contig15848:4642..4913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 4643..4913 -
1691679213.618347-CDS-H-elongata_contig15848:4642..49131691679213.618347-CDS-H-elongata_contig15848:4642..4913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 4643..4913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15848.3789.1prot_H-elongata_contig15848.3789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15848 1439..4913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15848.3789.1

>prot_H-elongata_contig15848.3789.1 ID=prot_H-elongata_contig15848.3789.1|Name=mRNA_H-elongata_contig15848.3789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MATRIGKNKRHRLAHEPHTAILVHSVATPIRMQWFEADCNKGKGNATACH
QVAEFLSVMKQDFKKAGKMYLMNCRTRDHGPSCFRFGQSLLTGRGMMQSD
SEAEKFFASACEKDHQPACLHLGLMHVTGGVGFKQDMKKAEQVFDSSCAE
GMGDSCNLLAKQLLRKDEKRMIPRDPPRAQKLLEKGCSYDHVSSCHNLAV
MYMLGDDDVPIDHLKYRKFMDRTEKLDALYRALGGNRQSFT*
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mRNA from alignment at H-elongata_contig15848:885..5262-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15848.3789.1 ID=mRNA_H-elongata_contig15848.3789.1|Name=mRNA_H-elongata_contig15848.3789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4378bp|location=Sequence derived from alignment at H-elongata_contig15848:885..5262- (Himanthalia elongata Himel1 dioecious)
TGTAAGGATATAATACCTTTTCGTTTTTAGTATATAGTACATTTTTTGTT
TTTAGGGTATAGTACCTTTTCGTTGTTGGGGTACAGCACCCATTCGGCTG
CGGAAACCGAAGAAGCTGCGGAAACCAAAGAAACATCCTGGTGAGAATCC
AACTATCTAATGACTTCCGTACTAATTCATAGATATAATGGCAGACTAAT
AATACTCGGATAATGAGCAATGTTCGGGTCGAAGTCCTAATCCGAGGACT
AATCAAAGATATACCCGATTGACGCCATCGCTGCGAAGGATCAACTGGCG
CAGTACACCACGTCCTTCATGCTGGAATGTCCATAAGCCCGGTGTGATAA
TGGCCACACGCATTGGTAAGAACAAACGCCATCGTCTCGCACACGAACCG
CATACCGCTATCCTCGTCCATTCGGTTGCCACGCCGATCAGGATGCAGTG
GTTCGAGGCCGACTGCAATAAAGGCAAGGGCAACGCCACGGCTTGCCACC
AAGTGGCAGAGTTCCTGTCAGTCATGAAGCAAGATTTCAAGAAGGCGGGC
AAGATGTACTTGATGAATTGCCGAACGCGTGACCATGGCCCGTCTTGCTT
CAGATTCGGACAAAGCTTACGTAAGGCGTGAGCACGGCAATCCAAAAACA
TGCTCCTTTTGTCGATTCACGATCAAGCTTTATAAAGTACTTTGATGGTA
CAGTACTCTGGGAGTTGTAAAGCGTGAAATTGTGTGTCGGATAAGGATCA
TATATCGGATAAGAAGGGGTGTTCTTATTCTTTATACGTTCGATGTGTCG
TACCACTCTAGCGCGTGCTACAAAAACAAGTTACATTTTTCTCGGCAGCA
GAGGCGAGGCGAATTGTAAAATAAGAGTCTATATGTGCATAACAAGCGCG
TTTCTCTCACCCCCGTGCCTGCGCTGCCGCTTTTACGTTTTCCCGTGTGC
CTATCCGCCGCTGTGTGGCCATAAGTCACGGGCAGGGGAATGATGCAGTC
TGACTCCGAAGCGGAGAAATTTTTCGGTACGTGATTACGAGTTAAGCTTT
ACAACGTTAAACCAGTGGAACATTTAAGCAGTAGTTAAGTAAACCACCCC
ACTCCCCACATGATCCTCTTTTGGAGTGCTCTAGGTTTGCCTTTTAAGCA
ACGTCAGGTCAGACAAGAAAAATTAGTCGGTGGTTCGATTCCCGGTGACC
TCATCGGAAAACTTTGTTCGTAATATCGCATTAAAGATGTCTTCTAGAAA
TGAATTTTCTACTAGATATAGTCATAGTCCTAATATGCTAGCTTACTTAT
ACCCTCACGTGTGACGACTTTTGTGCTCAAAGGTAGTGATGTACATATTC
GAACCTGACGATAGTTGGTCCCCTGGATTGCACCTCGGTGCTAAGAAGGT
GTGGATGTTCGGAGGGTTGGAATGAGTTCAACTTTTTTTTAATAGAAAAG
CATGACACCAGGGCGGAAGGAGTAGTTGCCTCATTGGTTGAAAGCAGCGC
TGATCTGCTTAGTACAGGGTTCAACGTTAGGTTTTTCTGGGGAGGTTTAT
CCCCTCTCCCCTCCCCCCTGATGCACGATAGGTTTTTGTGAAATGTAGCA
TGTTACCATTGCCACCTTAATAATATAATATTAATAGTCGCCCTCGAGGA
GATTCGATTCTTGGCGGCCTGATCTGGCAAATTTCTTCCAAAAATGTTGA
TGTTTTCTCTAAGGTCACGATGAGAAGAGCAGTTATTTCATAACAGGAAA
CGAAAACGATGACGCTGCTCATGACGGAGTTTGCGTTGCGCGAGATCGGG
GCTTCGTTGTTTAGTTCATTAAATCACCCCCTCTGATTTCCCGGTAACCT
CATCCTTGGGAAGATGGTGTTAGTCAGTATATAGCATAAAAGAGGCCAAC
ATGCGAAGGAGGGTCATACCCCATCCGCGTCTCTCGTGTGAATGACAACG
GCGATTACCGACGATTTATCGAATCTTATTCGTTTAGGATCTGTTTAATG
TAGCATGTTACCAACATCCCTCAGTTAAGTGAGGAATTGTACTATGTGTA
TGTGTAAAATGTATTTAATGAGGGGGTTCGACTCGTGGTGATCTTTTGGC
AGTTTTTATGTCATAAAAAACAAAAACACACCAGGTCGTGATTGATAGGA
AGGACAAATTTATGCCTTATCAGCGTCCCCTGAAAAATCACACAATGTCG
AAATATATACTGAGACATATTACCTCCGCGACGGATAGCTGGACCTGACC
TCACCTGACCTCGCTCGAAAGTTTCGAAGGCTCAAGATCGCTTCTACGAA
CAAGCGGCAAAACATTTCAATTGTCGATCAAATCGCCACCGACCCAACGT
GTGTCAGCCACCTCTTGACTTTTCCTCCTAGAGCATCGAAAAAAACTATA
GTAAAGTCATGCCTCGAATAGTTCTCGACACAGAGTGACGGGGCGCTTCT
TTTGTCCATTTGGCTCGAGGGTGTGACGGCACGTCTTATTTAACCTGGCT
CTCGAGAAGAAATTCTAGCAGCCTGCTTGTTGATTTTTTCCCACAGCTTC
TGCGTGCGAGAAAGATCATCAGCCAGCTTGCCTACATCTCGGGTTGATGC
ACGTAACCGGCGGAGTGGGATTCAAACAGGTGGGTTTCGCTTCCCGTCCA
CCAGCCAGCCGTCAATTCGCCTCCCTCCCGCTCGGAATATTTTTTTCGCG
CCCTTATATATATTGTATAATGAAGTATATATATATATTAAATATATTCC
GATACTTACATCTGTAATGTTTTTTCGTACTTCAATGTAGATGTATTCCG
AGACTTTCAGGTGGGTGGGTACTAGAGTAGAGTAGAGCACGTGTGCATCC
CGCACGCTGTTTTGCTGCCAGCAGCGCCTATCCTATACCGCTGGGTTCGC
GAGTGTCACTGCGCTACCTACCCGCAGCGCGTTGGAGTTCCGGAGAGGAA
GATGGTATGCGTACGAAGGATACGTGGCTGATTGACTCGGCGGCGTCTGG
GCGTCGCAATATGTCTGGCCTCTGATTGGGTCGTTGAATGAGCACACTCG
CCTCTCTTTTTGCCGAGGAGCATAATAATTTATCGCCATGTCGAAACGCG
CTTGATTCCAGTCGCGATCGAATGATATCCGCAGTTTTGTCTATCCTTGG
TCAGGATATGAAGAAGGCGGAACAAGTGTTCGACTCGTCCTGTGCTGAGG
GCATGGGCGATTCTTGCAACCTTCTCGCAAAGCAGTTACTAAGGAAAGAC
GAGAAAAGGATGATACCCCGAGACCCTCCACGAGCGCAGAAGCTGCTGGA
AAAGGGCTGCTCGTACGACCATGTGTCTTCATGCCACAATCTCGCCGTCA
TGTATATGCTCGGGGACGATGACGTACCAATGTGAGATAAGCCTCTTGAC
CTGGGGGGGTAATAGTAGTAATTAAGAGCGTCATGTGTGGCTAGCAGGAG
GGTAAGGGTTCAATCGCGATCACGTTTGACGCTACGGTGGAGCGGCATTG
CTATGCTTCCACTTAAGCACTGTAATGTTAAAATCTCGACTCTCGACCGC
AGCAGCGTCGCGGAAAGCTGGCGCACTCCCTTCACATAGTGGGAGCTGTC
TGCAGTCTTCATACAAGTATTTCCTTTTCCTCAAATCACGTCACGTTTGG
CGCAGAGCTAAACCAATATCCTACGCCCTCCATTTATCGCTTGTCATTAT
TGATATCATTGATCACTGATCGATTTCCAGCGACCACTTGAAGTACCGAA
AATTCATGGATCGGACGGAGAAGTTGGACGCACTGTATCGGGCACTGGGT
GGGAACAGGCAGTCGTTTACGTGACGTACTGTTGAGAACGGGAAGGCCAA
GATATACTTTTGCTGAATAATCGTGTTCGCGACAACGGTCCCTGCCAGCT
AGGGAGTTTTTCGGGCGGCGGATGTTTTTGCCTTGGGTGGTATATTGTAT
TGATTGATGCAGTACTGTATATTAGTAGAATCAAAAGACCATGCTGAGTG
TGGTGGCGAATTTTTGTTTGAGGGACTCTAAATAGAGTTGTATTAATAGA
GCTGTTCGCTTACGTTTTACTTGGCTGGTGCCATCGTGAACCAGTCTTTA
GATGTCGCTCTTATTTCGCCCAAAAAACATTCGCGTCAGTTTTTACTCGT
TCTTGATTGTGTTTCGATGAAATATGGGAATGTACCATTAACGTAGCAAT
CTCGGCACGCGTTGTCGATCTTCGTTCGATGGAAATCGTACAGTTGAAGC
GATATCGGCCTCTACTTATAGCCATTCGGAGGACAAAATCTTCTCCCCTG
CTCACAGAGATTTGTTCGAATGTGGCGGACGGCCTATATTGCATACTGCA
TACAGTATACTGCACATTGCAAGGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig15848:885..5262-

>mRNA_H-elongata_contig15848.3789.1 ID=mRNA_H-elongata_contig15848.3789.1|Name=mRNA_H-elongata_contig15848.3789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig15848:885..5262- (Himanthalia elongata Himel1 dioecious)
ATGGCCACACGCATTGGTAAGAACAAACGCCATCGTCTCGCACACGAACC
GCATACCGCTATCCTCGTCCATTCGGTTGCCACGCCGATCAGGATGCAGT
GGTTCGAGGCCGACTGCAATAAAGGCAAGGGCAACGCCACGGCTTGCCAC
CAAGTGGCAGAGTTCCTGTCAGTCATGAAGCAAGATTTCAAGAAGGCGGG
CAAGATGTACTTGATGAATTGCCGAACGCGTGACCATGGCCCGTCTTGCT
TCAGATTCGGACAAAGCTTACATGGCCACACGCATTGGTAAGAACAAACG
CCATCGTCTCGCACACGAACCGCATACCGCTATCCTCGTCCATTCGGTTG
CCACGCCGATCAGGATGCAGTGGTTCGAGGCCGACTGCAATAAAGGCAAG
GGCAACGCCACGGCTTGCCACCAAGTGGCAGAGTTCCTGTCAGTCATGAA
GCAAGATTTCAAGAAGGCGGGCAAGATGTACTTGATGAATTGCCGAACGC
GTGACCATGGCCCGTCTTGCTTCAGATTCGGACAAAGCTTACTCACGGGC
AGGGGAATGATGCAGTCTGACTCCGAAGCGGAGAAATTTTTCGTCACGGG
CAGGGGAATGATGCAGTCTGACTCCGAAGCGGAGAAATTTTTCGCTTCTG
CGTGCGAGAAAGATCATCAGCCAGCTTGCCTACATCTCGGGTTGATGCAC
GTAACCGGCGGAGTGGGATTCAAACAGCTTCTGCGTGCGAGAAAGATCAT
CAGCCAGCTTGCCTACATCTCGGGTTGATGCACGTAACCGGCGGAGTGGG
ATTCAAACAGGATATGAAGAAGGCGGAACAAGTGTTCGACTCGTCCTGTG
CTGAGGGCATGGGCGATTCTTGCAACCTTCTCGCAAAGCAGTTACTAAGG
AAAGACGAGAAAAGGATGATACCCCGAGACCCTCCACGAGCGCAGAAGCT
GCTGGAAAAGGGCTGCTCGTACGACCATGTGTCTTCATGCCACAATCTCG
CCGTCATGTATATGCTCGGGGACGATGACGTACCAATGATATGAAGAAGG
CGGAACAAGTGTTCGACTCGTCCTGTGCTGAGGGCATGGGCGATTCTTGC
AACCTTCTCGCAAAGCAGTTACTAAGGAAAGACGAGAAAAGGATGATACC
CCGAGACCCTCCACGAGCGCAGAAGCTGCTGGAAAAGGGCTGCTCGTACG
ACCATGTGTCTTCATGCCACAATCTCGCCGTCATGTATATGCTCGGGGAC
GATGACGTACCAATCGACCACTTGAAGTACCGAAAATTCATGGATCGGAC
GGAGAAGTTGGACGCACTGTATCGGGCACTGGGTGGGAACAGGCAGTCGT
TTACGTGACGACCACTTGAAGTACCGAAAATTCATGGATCGGACGGAGAA
GTTGGACGCACTGTATCGGGCACTGGGTGGGAACAGGCAGTCGTTTACGT
GA
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