mRNA_H-elongata_contig158385.3785.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158385.3785.1
Unique NamemRNA_H-elongata_contig158385.3785.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.670e-27
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 DLECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLL 309
            DL+  QLD  TAFL A +EE V+V+MAPGYE  N + + +VM+L KSL GL QSP+ W  T+D  +VEIGF  LKSD CVYIY     + +LTLYVDD+L++
Sbjct:  404 DLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLII 505          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.850e-27
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 LDLECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLG 312
            +D E  QLD  T+FL A +EE+V+VKMAPG+E  N +G  +VM+L  SLYGL QSP+ W+ T+D  ++E+GF  LKS+ CVYIY     + I+TLYVDD L++G
Sbjct:  364 MDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDDRLVIG 467          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A7D9H832_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9H832_PARCT)

HSP 1 Score: 105 bits (261), Expect = 3.400e-25
Identity = 48/104 (46.15%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    7 LECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            L+  Q+D  TAFLN  ++EEVY+K   G+ E   + +  V RL +S+YGL+QSPRCW   +D  +  +GF  +  DPC+Y+  EGG I+I+ +YVDD+LL GK+
Sbjct:   61 LKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEHL--VCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQITGDPCIYVKEEGGEIFIIAVYVDDILLAGKN 162          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.920e-24
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 WQLDYNTAFLNAKVEEEVYVKMAPGYEEFNN-DGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            +QLD   AFLNA  + +VYV+ APG    N+  G PMV +L +SLYGL QSP  W  T+DE +   G++  +SDPCVY+Y+ G  I ILT+YVDD+L++G D
Sbjct:   84 YQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGD 185          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.910e-24
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   16 WQLDYNTAFLNAKVEEEVYVKMAPGYEEFN--NDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            WQ+D   AFL   ++++V+VK APG +  +    GI MV +L +SLYGL QSP  WY T+DE +V IGFR  +SDPCVYI+  G  + ILTLYV+D+L+ GKD
Sbjct:  486 WQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGI-MVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKD 587          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.100e-23
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 WQLDYNTAFLNAKVEEEVYVKMAPGYEEFNN-DGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            +QLD   AFLNA  + +VYV+ APG    N+  G PMV +L +SLYGL QSP  W  T+DE +   G++  +SDPCVY+Y+ G +I ILT+YVDD+L+ G D
Sbjct:  292 YQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITGGD 393          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.820e-23
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   22 LDYNTAFLNAKVEEEVYVKMAPGYEEFNN-DGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGK 315
            +D  TAFL + VEEEVYV+ A GYE  +   G+P+VM+L KSLYGL+QSPR +     + + EIGF +L SDPCVY+Y  G    IL +YVDD  L G+
Sbjct:  102 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGR 200          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 104 bits (259), Expect = 1.830e-23
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    7 LECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            L+  Q+D  TAFLN  ++EEVY+K   G+ E   + +  V RL +S+YGL+QSPRCW   +D  +  +GF     DPC+Y+  EGG I+I+ +YVDD+LL GK+
Sbjct:   87 LKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEHL--VCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKN 188          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: UPI001C955A94 (hypothetical protein n=1 Tax=Blastococcus endophyticus TaxID=673521 RepID=UPI001C955A94)

HSP 1 Score: 100 bits (249), Expect = 2.080e-23
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 DLECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLG---------KDVVMYTFESDD 348
            DLE  Q+D  TAFL+  +EEE+Y+K   G+     + +  V +L KSLYGL+QSPR WY   D +  +IGF    +D CVY+  EG    ILTLYVDD+LL+G         KD++   FE  D
Sbjct:    9 DLEIEQMDVKTAFLHGDLEEEIYMKQPEGFVARGKENL--VCKLEKSLYGLKQSPRMWYQKFDSYAQQIGFTRSHADHCVYVKREGELFVILTLYVDDMLLIGNSTKMIRTVKDLLAKQFEMKD 130          
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.370e-23
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   16 WQLDYNTAFLNAKVEEEVYVKMAPGYEEFNN-DGIPMVMRLLKSLYGLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDVLLLGKD 318
            +QLD   AFLNA  + +VYV+ APG    N+  G PMV +L +SLYGL QSP  W  T+DE +   G++  +SDPCVY+Y+ G  I ILT+YVDD+L+ G D
Sbjct:  253 YQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPAVWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGD 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158385.3785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE1.670e-2755.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KUT9_9PHAE2.850e-2752.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9H832_PARCT3.400e-2546.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K066_9PHAE1.920e-2450.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE2.910e-2452.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTY2_9PHAE1.100e-2350.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVC8_9PHAE1.820e-2352.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT1.830e-2346.15Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001C955A942.080e-2344.35hypothetical protein n=1 Tax=Blastococcus endophyt... [more]
A0A6H5KH19_9PHAE2.370e-2350.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158385contigH-elongata_contig158385:1..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score97.1
Seed ortholog evalue6.5e-18
Seed eggNOG ortholog7425.NV18674-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.54816-CDS-H-elongata_contig158385:0..3841622929933.54816-CDS-H-elongata_contig158385:0..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158385 1..384 +
1691679213.4060235-CDS-H-elongata_contig158385:0..3841691679213.4060235-CDS-H-elongata_contig158385:0..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158385 1..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158385.3785.1prot_H-elongata_contig158385.3785.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158385 1..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158385.3785.1

>prot_H-elongata_contig158385.3785.1 ID=prot_H-elongata_contig158385.3785.1|Name=mRNA_H-elongata_contig158385.3785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
LDLECWQLDYNTAFLNAKVEEEVYVKMAPGYEEFNNDGIPMVMRLLKSLY
GLRQSPRCWYGTVDEHVVEIGFRSLKSDPCVYIYSEGGAIYILTLYVDDV
LLLGKDVVMYTFESDDSWSPELHLSRR*
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mRNA from alignment at H-elongata_contig158385:1..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158385.3785.1 ID=mRNA_H-elongata_contig158385.3785.1|Name=mRNA_H-elongata_contig158385.3785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig158385:1..384+ (Himanthalia elongata Himel1 dioecious)
CTCGACTTGGAGTGCTGGCAGCTTGATTACAACACCGCGTTCCTGAATGC CAAAGTCGAAGAGGAAGTTTACGTTAAAATGGCACCCGGATACGAGGAAT TCAATAACGACGGAATTCCAATGGTAATGAGGCTCCTCAAAAGTCTCTAT GGTCTCCGGCAAAGTCCAAGGTGCTGGTATGGAACGGTCGACGAACACGT GGTGGAGATCGGTTTCAGAAGCCTCAAGTCGGACCCCTGTGTCTACATCT ACTCCGAGGGCGGCGCCATCTACATCTTGACCCTCTATGTCGACGACGTT CTACTGCTCGGTAAAGACGTAGTAATGTACACATTCGAATCTGACGATAG TTGGTCCCCTGAACTGCACCTCTCACGGCGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig158385:1..384+

>mRNA_H-elongata_contig158385.3785.1 ID=mRNA_H-elongata_contig158385.3785.1|Name=mRNA_H-elongata_contig158385.3785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig158385:1..384+ (Himanthalia elongata Himel1 dioecious)
CTCGACTTGGAGTGCTGGCAGCTTGATTACAACACCGCGTTCCTGAATGC
CAAAGTCGAAGAGGAAGTTTACGTTAAAATGGCACCCGGATACGAGGAAT
TCAATAACGACGGAATTCCAATGGTAATGAGGCTCCTCAAAAGTCTCTAT
GGTCTCCGGCAAAGTCCAAGGTGCTGGTATGGAACGGTCGACGAACACGT
GGTGGAGATCGGTTTCAGAAGCCTCAAGTCGGACCCCTGTGTCTACATCT
ACTCCGAGGGCGGCGCCATCTACATCTTGACCCTCTATGTCGACGACGTT
CTACTGCTCGGTAAAGACGTAGTAATGTACACATTCGAATCTGACGATAG
TTGGTCCCCTGAACTGCACCTCTCACGGCGCTAACTCGACTTGGAGTGCT
GGCAGCTTGATTACAACACCGCGTTCCTGAATGCCAAAGTCGAAGAGGAA
GTTTACGTTAAAATGGCACCCGGATACGAGGAATTCAATAACGACGGAAT
TCCAATGGTAATGAGGCTCCTCAAAAGTCTCTATGGTCTCCGGCAAAGTC
CAAGGTGCTGGTATGGAACGGTCGACGAACACGTGGTGGAGATCGGTTTC
AGAAGCCTCAAGTCGGACCCCTGTGTCTACATCTACTCCGAGGGCGGCGC
CATCTACATCTTGACCCTCTATGTCGACGACGTTCTACTGCTCGGTAAAG
ACGTAGTAATGTACACATTCGAATCTGACGATAGTTGGTCCCCTGAACTG
CACCTCTCACGGCGCTAA
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