mRNA_H-elongata_contig158252.3781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158252.3781.1
Unique NamemRNA_H-elongata_contig158252.3781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: D7FY11_ECTSI (NodB homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY11_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-23
Identity = 42/49 (85.71%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLSEIVGA+PKEGVRCPNMES+YEYGSRAGFWRLHRLFT K++P+T
Sbjct:   66 SEHLLSEIVGAAPKEGVRCPNMESLYEYGSRAGFWRLHRLFTAKDVPVT 114
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A7S0Y3B7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y3B7_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.610e-19
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLSEIVG +P +GVR  NMES+YEYGSRAGFWRLHRLFT ++MP T
Sbjct:   55 SEHLLSEIVGVAPYKGVRHANMESLYEYGSRAGFWRLHRLFTERDMPCT 103
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A7S1EGI7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EGI7_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 9.710e-18
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLSEIVG +P +GVR  NMES+YEYGSRAGFWRLHRLFT ++MP T
Sbjct:   76 SEHLLSEIVGVAPYKGVRHANMESLYEYGSRAGFWRLHRLFTERDMPCT 124
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A8K1FLP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLP4_PYTOL)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-17
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   16 NQPSQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            +Q S+HLLS+IVGASP +G R  NMES+YEYGSR GFWRLHRLFT +++P+T
Sbjct:   47 DQASEHLLSDIVGASPYQGERHMNMESLYEYGSRVGFWRLHRLFTERKLPVT 98
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A4D9D0C2_9STRA (NodB homology domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0C2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.090e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLSEIVGA+P  GVR  NMES+YEYGSRAGFWRL+RLFT K++P+T
Sbjct:   47 SEHLLSEIVGAAPLPGVRHVNMESLYEYGSRAGFWRLYRLFTKKKVPVT 95
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A836CM71_9STRA (Putative urate catabolism protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM71_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.130e-17
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+ LLSEIVGAS  +GVR PNMES+YEYGSRAGFWRLHR+FT + MP+T
Sbjct:   54 SEWLLSEIVGASSYKGVRHPNMESLYEYGSRAGFWRLHRMFTERAMPVT 102
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A1R4G2E2_9MICO (Uricase (Urate oxidase) n=1 Tax=Gulosibacter sp. 10 TaxID=1255570 RepID=A0A1R4G2E2_9MICO)

HSP 1 Score: 80.9 bits (198), Expect = 7.780e-17
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLSEIVGA+P EG R  N+ES+YEYGSRAGFWRLHRLFT  EMP T
Sbjct:   52 SEHLLSEIVGAAPWEGQRNLNIESIYEYGSRAGFWRLHRLFTELEMPAT 100
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A7R9X0L9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9X0L9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.900e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLS+I GA P+EG R  NMESMYEYGSR GFWRLHRLFT+K++P+T
Sbjct:   63 SEHLLSDIPGAVPEEGGRNMNMESMYEYGSRCGFWRLHRLFTSKKVPVT 111
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BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: A0A6G0WNA0_9STRA (NodB homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNA0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-16
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   25 SQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            S+HLLS+IVGAS  +G R  NMES+YEYGSRAGFWRLHRLFT +++P+T
Sbjct:   54 SEHLLSDIVGASSYKGARHMNMESLYEYGSRAGFWRLHRLFTERQLPVT 102
[Close]
BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Match: K3WUK4_GLOUD (NodB homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUK4_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 1.560e-16
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   16 NQPSQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFTTKEMPIT 171
            ++ S+HLLS+IVGA+P  G R  NMES+YEYGSRAGFWRLHR FT ++MP+T
Sbjct:   44 DKASEHLLSDIVGATPYVGERNMNMESLYEYGSRAGFWRLHRAFTARKMPVT 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158252.3781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY11_ECTSI1.420e-2385.71NodB homology domain-containing protein n=1 Tax=Ec... [more]
A0A7S0Y3B7_HEMAN2.610e-1975.51Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1EGI7_HEMAN9.710e-1875.51Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A8K1FLP4_PYTOL1.120e-1769.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D0C2_9STRA2.090e-1775.51NodB homology domain-containing protein n=2 Tax=Mo... [more]
A0A836CM71_9STRA3.130e-1775.51Putative urate catabolism protein n=1 Tax=Tribonem... [more]
A0A1R4G2E2_9MICO7.780e-1777.55Uricase (Urate oxidase) n=1 Tax=Gulosibacter sp. 1... [more]
A0A7R9X0L9_9STRA9.900e-1773.47Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6G0WNA0_9STRA1.200e-1671.43NodB homology domain-containing protein n=1 Tax=Ap... [more]
K3WUK4_GLOUD1.560e-1667.31NodB homology domain-containing protein n=1 Tax=Gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158252contigH-elongata_contig158252:308..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D7FY11
EggNOG free text desc.Polysaccharide deacetylase
EggNOG OGs2QQRF@2759,COG0726@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.9466164-CDS-H-elongata_contig158252:307..4781622929932.9466164-CDS-H-elongata_contig158252:307..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158252 308..478 -
1691679213.0885518-CDS-H-elongata_contig158252:307..4781691679213.0885518-CDS-H-elongata_contig158252:307..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158252 308..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158252.3781.1prot_H-elongata_contig158252.3781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158252 308..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158252.3781.1

>prot_H-elongata_contig158252.3781.1 ID=prot_H-elongata_contig158252.3781.1|Name=mRNA_H-elongata_contig158252.3781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MLSCFNQPSQHLLSEIVGASPKEGVRCPNMESMYEYGSRAGFWRLHRLFT
TKEMPIT
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mRNA from alignment at H-elongata_contig158252:308..478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158252.3781.1 ID=mRNA_H-elongata_contig158252.3781.1|Name=mRNA_H-elongata_contig158252.3781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig158252:308..478- (Himanthalia elongata Himel1 dioecious)
ATGTTATCTTGTTTCAATCAACCATCACAGCACCTGCTCTCGGAGATCGT
CGGTGCCTCGCCTAAAGAGGGCGTCAGGTGTCCCAACATGGAGTCGATGT
ACGAGTACGGCAGCAGGGCCGGTTTCTGGCGCCTGCACCGGCTCTTCACC
ACCAAGGAGATGCCCATCACG
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Coding sequence (CDS) from alignment at H-elongata_contig158252:308..478-

>mRNA_H-elongata_contig158252.3781.1 ID=mRNA_H-elongata_contig158252.3781.1|Name=mRNA_H-elongata_contig158252.3781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig158252:308..478- (Himanthalia elongata Himel1 dioecious)
ATGTTATCTTGTTTCAATCAACCATCACAGCACCTGCTCTCGGAGATCGT
CGGTGCCTCGCCTAAAGAGGGCGTCAGGTGTCCCAACATGGAGTCGATGT
ACGAGTACGGCAGCAGGGCCGGTTTCTGGCGCCTGCACCGGCTCTTCACC
ACCAAGGAGATGCCCATCACGATGTTATCTTGTTTCAATCAACCATCACA
GCACCTGCTCTCGGAGATCGTCGGTGCCTCGCCTAAAGAGGGCGTCAGGT
GTCCCAACATGGAGTCGATGTACGAGTACGGCAGCAGGGCCGGTTTCTGG
CGCCTGCACCGGCTCTTCACCACCAAGGAGATGCCCATCACG
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