mRNA_H-elongata_contig158206.3779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158206.3779.1
Unique NamemRNA_H-elongata_contig158206.3779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.580e-15
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFGMVLGLIPVTLIGLF AAF QYRRGNKLGL
Sbjct:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFG+VLG++PVT+IGLF AA+ QYRRGN++GL
Sbjct:    1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQIGL 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH)

HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFG+VLGLIPVTL GLF AA+ QYRRGN+ GL
Sbjct:    1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQFGL 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: W0RYK9_PORPP (Cytochrome b6-f complex subunit 5 n=15 Tax=cellular organisms TaxID=131567 RepID=W0RYK9_PORPP)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            M+EPLL G++LGLIPVTLIGLF AA+ QYRRGN+LGL
Sbjct:    1 MVEPLLSGIILGLIPVTLIGLFVAAYLQYRRGNQLGL 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: B2XT41_HETAK (Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT41_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFG+VLG+IPVTL GLF AA+ QY+RGN+LGL
Sbjct:    1 MIEPLLFGIVLGMIPVTLTGLFVAAYLQYKRGNQLGL 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: A0A7S6ZPA1_9STRA (Cytochrome b6-f complex subunit 5 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFG+VLG+IP TLIGLFAAAF QY RG+KLG+
Sbjct:    1 MIEPLLFGIVLGIIPTTLIGLFAAAFSQYSRGSKLGI 37
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BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 8.200e-12
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEPLLFG+VLGLIP+TL+GLF AA+ Q+RR NKLG+
Sbjct:    1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANKLGI 37
[Close]
BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: K8GJW3_9CYAN (Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria TaxID=2 RepID=K8GJW3_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            MIEP+L G+VLGLIPVTL GLF AA+ QYRRGN+LGL
Sbjct:    1 MIEPILLGIVLGLIPVTLAGLFVAAYLQYRRGNELGL 37
[Close]
BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: A0A098TN63_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TN63_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            M+EPLL G+V+GLIPVTL+GLF AA+ QYRRGN+LGL
Sbjct:    1 MVEPLLTGIVMGLIPVTLLGLFVAAYLQYRRGNQLGL 37
[Close]
BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Match: A0A1C9CCX2_9RHOD (Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCX2_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 2.350e-11
Identity = 27/37 (72.97%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL 111
            M+EPLL G+VLGLIPVTL+GLF+AA+ QYRRGN++G+
Sbjct:    1 MVEPLLSGIVLGLIPVTLLGLFSAAYLQYRRGNQIGM 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158206.3779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J759_ECTSI3.580e-1594.59Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeoph... [more]
B7T220_VAULI2.850e-1275.68Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheri... [more]
PETG_GUITH4.060e-1281.08Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryo... [more]
W0RYK9_PORPP5.770e-1278.38Cytochrome b6-f complex subunit 5 n=15 Tax=cellula... [more]
B2XT41_HETAK5.770e-1278.38Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosi... [more]
A0A7S6ZPA1_9STRA5.770e-1281.08Cytochrome b6-f complex subunit 5 n=1 Tax=Schizocl... [more]
A0A1C9CFS4_9FLOR8.200e-1275.68Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbr... [more]
K8GJW3_9CYAN1.660e-1178.38Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria... [more]
A0A098TN63_9CYAN1.660e-1175.68Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynec... [more]
A0A1C9CCX2_9RHOD2.350e-1172.97Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158206contigH-elongata_contig158206:1136..1249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D1J759
Preferred namepetG
KEGG koko:K02640
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs2E6DA@1,2SD3G@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categorysignal anchor
Exons1
Model size114
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.786033-CDS-H-elongata_contig158206:1135..12491622929932.786033-CDS-H-elongata_contig158206:1135..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 1136..1249 -
1691679213.0469153-CDS-H-elongata_contig158206:1135..12491691679213.0469153-CDS-H-elongata_contig158206:1135..1249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 1136..1249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158206.3779.1prot_H-elongata_contig158206.3779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158206 1136..1249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158206.3779.1

>prot_H-elongata_contig158206.3779.1 ID=prot_H-elongata_contig158206.3779.1|Name=mRNA_H-elongata_contig158206.3779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MIEPLLFGMVLGLIPVTLIGLFAAAFFQYRRGNKLGL*
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mRNA from alignment at H-elongata_contig158206:1136..1249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158206.3779.1 ID=mRNA_H-elongata_contig158206.3779.1|Name=mRNA_H-elongata_contig158206.3779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig158206:1136..1249- (Himanthalia elongata Himel1 dioecious)
ATGATTGAGCCTCTTCTTTTTGGTATGGTTTTAGGTCTGATTCCAGTAAC
TTTAATTGGTTTATTTGCTGCTGCGTTTTTCCAGTATCGCCGTGGAAATA
AGCTTGGTTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig158206:1136..1249-

>mRNA_H-elongata_contig158206.3779.1 ID=mRNA_H-elongata_contig158206.3779.1|Name=mRNA_H-elongata_contig158206.3779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig158206:1136..1249- (Himanthalia elongata Himel1 dioecious)
ATGATTGAGCCTCTTCTTTTTGGTATGGTTTTAGGTCTGATTCCAGTAAC
TTTAATTGGTTTATTTGCTGCTGCGTTTTTCCAGTATCGCCGTGGAAATA
AGCTTGGTTTATAAATGATTGAGCCTCTTCTTTTTGGTATGGTTTTAGGT
CTGATTCCAGTAACTTTAATTGGTTTATTTGCTGCTGCGTTTTTCCAGTA
TCGCCGTGGAAATAAGCTTGGTTTATAA
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