mRNA_H-elongata_contig158206.3778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158206.3778.1
Unique NamemRNA_H-elongata_contig158206.3778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A2U1MPB7_ARTAN (Photosystem I n=40 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MPB7_ARTAN)

HSP 1 Score: 329 bits (844), Expect = 3.370e-110
Identity = 169/289 (58.48%), Postives = 193/289 (66.78%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHF--------TVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF        T   + + A   +     K +KL +KY   R++   +  K  +  D+ EI+ K++  PRNSA  RL  RC+ TGR R  YRDFGL  H++REM H C+LPG  ++SW
Sbjct:   53 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSDPTCIMDTNRNLTSMAKKSLIQREKKRQKLEQKYHSIRRSSKEEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 341          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A6S7L0J9_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7L0J9_LACSI)

HSP 1 Score: 329 bits (844), Expect = 2.260e-105
Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF              S   K +KL +KY   R++   +  K  +  D+ EI+ K++  PRNSA  RL  RC+ TGR R  YRDFGL  H++REM H C+LPG  ++SW
Sbjct:  462 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF--------------SREKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 728          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A3P6DWV1_BRAOL (Photosystem I n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6DWV1_BRAOL)

HSP 1 Score: 320 bits (821), Expect = 2.580e-105
Identity = 165/291 (56.70%), Postives = 192/291 (65.98%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTY----------AAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+    +            A   +     K +KL +KY   R++L  +  +  +  ++ +IH K++  PRNSA  RL  RC+ TGR R  YRDFGL  H++REM   C+LPG  ++SW
Sbjct:  152 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 442          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A6S7LXY5_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7LXY5_LACSI)

HSP 1 Score: 329 bits (844), Expect = 1.350e-104
Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF              S   K +KL +KY   R++   +  K  +  D+ EI+ K++  PRNSA  RL  RC+ TGR R  YRDFGL  H++REM H C+LPG  ++SW
Sbjct:  540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF--------------SREKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 806          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A0D3EEW1_BRAOL (Photosystem I n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D3EEW1_BRAOL)

HSP 1 Score: 315 bits (807), Expect = 1.020e-102
Identity = 162/291 (55.67%), Postives = 190/291 (65.29%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTY----------AAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+    +            A   +     K +KL +KY   R++   + ++  +  ++ +IH K++  PRNS   RL  RC+  GR R  YRDFGL  H++REM   C+LPG  ++SW
Sbjct:  189 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSSKKEIREIPSLREKWKIHGKLQSPPRNSGPTRLHRRCFSNGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 479          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A2G3AJJ4_CAPAN (Photosystem I chlorophyll a apoprotein A2 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G3AJJ4_CAPAN)

HSP 1 Score: 304 bits (778), Expect = 5.250e-100
Identity = 153/243 (62.96%), Postives = 173/243 (71.19%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
            DA GSKLMPDKKDF   F        GN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+      Y      S   +  K+  + S     L  +  K     D+ EI+ K++ LPRNSA  RL  RC+ TGR R  YR FGL  H++REM H C+ PG  ++SW
Sbjct:  114 DAHGSKLMPDKKDFVIVFRAMAQDEVGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFS--EFNHYGKEKFDSEGEEEAKIGTEISFDSSILKKEISKVPALSDKWEIYGKLQSLPRNSAPTRLHRRCFLTGRPRANYRAFGLSGHILREMVHACLFPGATRSSW 354          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI)

HSP 1 Score: 309 bits (791), Expect = 1.980e-97
Identity = 155/194 (79.90%), Postives = 155/194 (79.90%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIAST GKF
Sbjct:  540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTTGKF 733          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: Q5QA60_ACOGR (Photosystem I (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q5QA60_ACOGR)

HSP 1 Score: 290 bits (741), Expect = 1.110e-96
Identity = 141/194 (72.68%), Postives = 150/194 (77.32%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
            DARG+KLMPDKKDFGYSFPCDGPGRGG                                      N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+VGYI TYAAF+IAST+GKF
Sbjct:    2 DARGAKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 195          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: B2XT53_HETAK (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT53_HETAK)

HSP 1 Score: 305 bits (782), Expect = 4.280e-96
Identity = 153/194 (78.87%), Postives = 153/194 (78.87%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGL HF VGYILTYAAFVIAST GKF
Sbjct:  540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFAVGYILTYAAFVIASTTGKF 733          
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A7T7IGM3_9STRA (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Stichogloea TaxID=82160 RepID=A0A7T7IGM3_9STRA)

HSP 1 Score: 305 bits (782), Expect = 4.280e-96
Identity = 151/194 (77.84%), Postives = 155/194 (79.90%), Query Frame = 1
Query:    1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
            DARGSKLMPDKKDFGYSFPCDGPGRGG                                      NAAQFNESSNY+MGWLRDYLWLNSSPLINGYNPYGMN+LSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLVWAHERTPLANLVRW+DKPVALSIVQARLVGL HFTVGYILTYAAFVIASTAGKF
Sbjct:  540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYLMGWLRDYLWLNSSPLINGYNPYGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTVGYILTYAAFVIASTAGKF 733          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1MPB7_ARTAN3.370e-11058.48Photosystem I n=40 Tax=Anthemideae TaxID=102810 Re... [more]
A0A6S7L0J9_LACSI2.260e-10559.79Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 ... [more]
A0A3P6DWV1_BRAOL2.580e-10556.70Photosystem I n=1 Tax=Brassica oleracea TaxID=3712... [more]
A0A6S7LXY5_LACSI1.350e-10459.79Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 ... [more]
A0A0D3EEW1_BRAOL1.020e-10255.67Photosystem I n=2 Tax=Brassica oleracea TaxID=3712... [more]
A0A2G3AJJ4_CAPAN5.250e-10062.96Photosystem I chlorophyll a apoprotein A2 n=1 Tax=... [more]
A0A0R6MFW0_UNDPI1.980e-9779.90Photosystem I P700 chlorophyll a apoprotein A2 n=7... [more]
Q5QA60_ACOGR1.110e-9672.68Photosystem I (Fragment) n=2 Tax=Mesangiospermae T... [more]
B2XT53_HETAK4.280e-9678.87Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]
A0A7T7IGM3_9STRA4.280e-9677.84Photosystem I P700 chlorophyll a apoprotein A2 n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158206contigH-elongata_contig158206:104..1093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score306.2
Seed ortholog evalue1.3e-80
Seed eggNOG ortholog3712.Bo9g161620.1
Preferred namerps14
KEGG koko:K02954,ko:K20101
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003735,GO:0003824,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0199@1,KOG1741@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size732
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158206.3778.1prot_H-elongata_contig158206.3778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158206 125..1093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.6359413-UTR-H-elongata_contig158206:103..1241622929932.6359413-UTR-H-elongata_contig158206:103..124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158206 104..124 +
1691679213.0051131-UTR-H-elongata_contig158206:103..1241691679213.0051131-UTR-H-elongata_contig158206:103..124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158206 104..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.6727731-CDS-H-elongata_contig158206:124..1821622929932.6727731-CDS-H-elongata_contig158206:124..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 125..182 +
1691679213.0173717-CDS-H-elongata_contig158206:124..1821691679213.0173717-CDS-H-elongata_contig158206:124..182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 125..182 +
1622929932.686233-CDS-H-elongata_contig158206:296..6861622929932.686233-CDS-H-elongata_contig158206:296..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 297..686 +
1691679213.0269039-CDS-H-elongata_contig158206:296..6861691679213.0269039-CDS-H-elongata_contig158206:296..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 297..686 +
1622929932.7190502-CDS-H-elongata_contig158206:830..10931622929932.7190502-CDS-H-elongata_contig158206:830..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 831..1093 +
1691679213.036445-CDS-H-elongata_contig158206:830..10931691679213.036445-CDS-H-elongata_contig158206:830..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158206 831..1093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158206.3778.1

>prot_H-elongata_contig158206.3778.1 ID=prot_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MPDKKDFGYSFPCDGPGRGGNAAQFNESSNYIMGWLRDYLWLNSSPLING
YNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHER
TPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFK
KLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCW
RTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW*
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mRNA from alignment at H-elongata_contig158206:104..1093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158206.3778.1 ID=mRNA_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig158206:104..1093+ (Himanthalia elongata Himel1 dioecious)
GATGCTCGTGGGTCTAAATTAATGCCGGATAAAAAAGATTTCGGTTATAG TTTCCCATGTGATGGTCCAGGTCGAGGTGGTACTTGTGATATTTCTGCTT GGGATGCATTTTATTTATCAATGTTTTGGATGTTAAATACAATTGGTTGG GTTACTTTCTATTGGCATTGGAAACATGTGACAATTTGGCAAGGTAATGC AGCTCAATTTAATGAATCATCAAATTATATTATGGGTTGGTTACGTGACT ACTTATGGTTAAACTCATCTCCATTAATCAACGGATATAATCCTTATGGG ATGAATAGTCTATCTGTATGGGCTTGGATGTTCTTATTTGGGCATTTAAT TTGGGCTACAGGATTCATGTTCTTAATTTCATGGAGAGGTTATTGGCAGG AACTAATCGAAACATTAGTTTGGGCTCATGAACGTACTCCTCTGGCGAAT TTAGTTCGTTGGCGTGACAAACCAGTTGCGTTATCAATTGTTCAAGCTAG ATTAGTTGGATTAGTACATTTTACAGTTGGTTATATTTTAACATACGCTG CTTTTGTTATTGCTTCAACTGCTGGAAAATTTAGTTAATTTAGACTATAC TATGATTTAGGTTTGTATATTAAAGTGAAATTCCACTTTAATATACAAAG TTAATAATATATTAAAAATTTAATTAGGGATTTTTGTATGGCTAAACAAT CAATGATTCAACGAGAAAAAAAGAGAGAAAAATTAGTTGAAAAATATAGT GAAAAAAGAAAAGCGCTCTTAATCGATTTCAAAAAAGCAGATAATTTTAT AGATCAAATGGAAATTCACAAAAAAATAGAAAAATTACCTAGAAATAGTG CTAAAATAAGATTAAGAAATAGATGTTGGAGAACAGGTCGTAGTAGAGGT GTTTATAGAGATTTTGGATTATGTCGCCATATGATAAGGGAAATGGCACA CAATTGTATATTACCTGGAGTTCGTAAAGCTAGTTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig158206:104..1093+

>mRNA_H-elongata_contig158206.3778.1 ID=mRNA_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig158206:104..1093+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGATAAAAAAGATTTCGGTTATAGTTTCCCATGTGATGGTCCAGG
TCGAGGTGATGCCGGATAAAAAAGATTTCGGTTATAGTTTCCCATGTGAT
GGTCCAGGTCGAGGTGGTAATGCAGCTCAATTTAATGAATCATCAAATTA
TATTATGGGTTGGTTACGTGACTACTTATGGTTAAACTCATCTCCATTAA
TCAACGGATATAATCCTTATGGGATGAATAGTCTATCTGTATGGGCTTGG
ATGTTCTTATTTGGGCATTTAATTTGGGCTACAGGATTCATGTTCTTAAT
TTCATGGAGAGGTTATTGGCAGGAACTAATCGAAACATTAGTTTGGGCTC
ATGAACGTACTCCTCTGGCGAATTTAGTTCGTTGGCGTGACAAACCAGTT
GCGTTATCAATTGTTCAAGCTAGATTAGTTGGATTAGTACATTTTACAGT
TGGTTATATTTTAACATACGCTGCTTTTGTTATTGCTTCAACTGCTGGAA
AATTTAGTAATGCAGCTCAATTTAATGAATCATCAAATTATATTATGGGT
TGGTTACGTGACTACTTATGGTTAAACTCATCTCCATTAATCAACGGATA
TAATCCTTATGGGATGAATAGTCTATCTGTATGGGCTTGGATGTTCTTAT
TTGGGCATTTAATTTGGGCTACAGGATTCATGTTCTTAATTTCATGGAGA
GGTTATTGGCAGGAACTAATCGAAACATTAGTTTGGGCTCATGAACGTAC
TCCTCTGGCGAATTTAGTTCGTTGGCGTGACAAACCAGTTGCGTTATCAA
TTGTTCAAGCTAGATTAGTTGGATTAGTACATTTTACAGTTGGTTATATT
TTAACATACGCTGCTTTTGTTATTGCTTCAACTGCTGGAAAATTTAAAAA
ATTAGTTGAAAAATATAGTGAAAAAAGAAAAGCGCTCTTAATCGATTTCA
AAAAAGCAGATAATTTTATAGATCAAATGGAAATTCACAAAAAAATAGAA
AAATTACCTAGAAATAGTGCTAAAATAAGATTAAGAAATAGATGTTGGAG
AACAGGTCGTAGTAGAGGTGTTTATAGAGATTTTGGATTATGTCGCCATA
TGATAAGGGAAATGGCACACAATTGTATATTACCTGGAGTTCGTAAAGCT
AGTTGGTAAAAAAATTAGTTGAAAAATATAGTGAAAAAAGAAAAGCGCTC
TTAATCGATTTCAAAAAAGCAGATAATTTTATAGATCAAATGGAAATTCA
CAAAAAAATAGAAAAATTACCTAGAAATAGTGCTAAAATAAGATTAAGAA
ATAGATGTTGGAGAACAGGTCGTAGTAGAGGTGTTTATAGAGATTTTGGA
TTATGTCGCCATATGATAAGGGAAATGGCACACAATTGTATATTACCTGG
AGTTCGTAAAGCTAGTTGGTAA
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