mRNA_H-elongata_contig15820.3777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15820.3777.1
Unique NamemRNA_H-elongata_contig15820.3777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 1.340e-128
Identity = 191/264 (72.35%), Postives = 216/264 (81.82%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            +LDD  + + SPTSVT KWLL SE++V  G++FYC G+  GGDCDELRIQS    D+ EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSF+NCVSE  + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX                 GG +AVGIFLHRSSD+ E+YG
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG 264          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 7.200e-116
Identity = 167/271 (61.62%), Postives = 193/271 (71.22%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
            +LDDD   +  P+ +T  WLLA+E+++  G VFYC+GTS GGDC++LRIQS  S D++EVRGHGGSLYFEDT+VTSWDTPNK PQE YE GRSF+NCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWK        VRGFC D SNP VFD TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT                                GGA AVGIFLHRSSD   ++
Sbjct:   22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD------------GGAAAVGIFLHRSSDDAAVF 280          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 3.270e-115
Identity = 167/263 (63.50%), Postives = 195/263 (74.14%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
            +LDDD   +  P+ +T  WLLA+E+++  G VFYC+GTS GGDC++LRIQS  S D++EVRGHGGSLYFEDT+VTSWDTPNK PQE YE+GRSF+NCVSE  + + CEG  KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNP VF+ TNVYGD+  SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA                              GGA A GIFLHRSSD   ++
Sbjct:  473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVF 735          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 6.350e-112
Identity = 163/262 (62.21%), Postives = 189/262 (72.14%), Query Frame = 1
Query:    4 LDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
            LDD  + + +P  ++ KWLL +E+ +  G+VFYCRG+SIGGDCDELRIQS   TD++EVR HGGS+YFE T+VTSWDTPNKTPQ  Y  GRSF+NCVSE  + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP VFDTTNVYG++  SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT                                GG  A GIFLHRSSD   ++
Sbjct:  111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD------------GGPFAAGIFLHRSSDYAIVH 360          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 5.830e-111
Identity = 159/265 (60.00%), Postives = 189/265 (71.32%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            +LD +D +  + T+ TGKWLL +++FV  G+  YCRG  +GG+C ELRI+S + +D+ E+RGHGG+LYFEDT+VTSWD   + PQE Y+DGRSFI CVSE    ++TC     N+ GECRMDIIDSEMGYLG+  SE+YG+TWKVRGFC+D SNP VFD  NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA                              GGADA GIFLHRS D  E+YG
Sbjct:   35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYG 296          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 2.330e-109
Identity = 164/273 (60.07%), Postives = 187/273 (68.50%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            +LD     + +PTSVT KWLL +E++V  G++FYC G+  GGDCDELRIQS    D+ EVRGHGGS+YF  T+VTSWDTPNK PQE YE GRSF+NCVSE  + ETC+G  KND GECRMDII+SEMGY+G+FDSESYGLTWKVR         GFC D SNP VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY            +A                              GG DAVGIFLHRSSD+ E+YG
Sbjct:   46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYG 306          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 7.380e-83
Identity = 135/254 (53.15%), Postives = 157/254 (61.81%), Query Frame = 1
Query:   37 TSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            TS TG WLL  E++V  G      G+  GGD DELR+ S N T  N +R HGGSL F  T V SWDT   +P E   DGRS+I+ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNP VFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   + GIFLHRSSD   + G
Sbjct:   97 TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 1.340e-81
Identity = 135/254 (53.15%), Postives = 157/254 (61.81%), Query Frame = 1
Query:   37 TSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            TS TG WLL  E++V  G      G+  GGD DELR+ S N T  N +R HGGSL F  T V SWDT   +P E   DGRS+I+ +SE   + DETCEG  KN  GE RMDI  SE+GYLG++DSESYGLTWKVRGFC DKSNP VFD  NVYG++ +SDIHHM +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   + GIFLHRSSD   + G
Sbjct:   97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 2.670e-80
Identity = 139/266 (52.26%), Postives = 167/266 (62.78%), Query Frame = 1
Query:    1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESD--ETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            +LD +D+++    S TG WLL  ++ V  GS+    G   GGD   LRIQS  S DY E+RGHGGSL F DT VTSWDT  K     Y+  RSFI CVSE  +D  +TC+G   N  GECRMDII SEMG +G+  +ESYG++WKVRG+C++  NP VF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA                              GG  AVGIFLHRSSD CE++G
Sbjct:  428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWG 691          
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.030e-78
Identity = 132/251 (52.59%), Postives = 155/251 (61.75%), Query Frame = 1
Query:   46 TGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
            TG WLL  E++V  G      GT  GGD DELR+ S + T Y  +R HGGSL F  T V SWDT   +P E   DGRS+I+ VSE   + DETCEG  KN  GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNP +FD  NVYG++ +SDIHH+ +G+Y+YGHQ G W  NKMHDN  YGFDPHDDSD+LTI                               G   + GIFLHRSSD   + G
Sbjct:  104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI1.340e-12872.35Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE7.200e-11661.62MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI3.270e-11563.50Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LRM4_ECTSI6.350e-11262.21Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D7FRR8_ECTSI5.830e-11160.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE2.330e-10960.07MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FXE5_ECTSI7.380e-8353.15Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI1.340e-8153.15Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE2.670e-8052.26MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI1.030e-7852.59Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15820contigH-elongata_contig15820:3159..4146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.1
Seed ortholog evalue7e-96
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size794
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15820.3777.1prot_H-elongata_contig15820.3777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15820 3159..4122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.5476894-CDS-H-elongata_contig15820:3158..33981622929932.5476894-CDS-H-elongata_contig15820:3158..3398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 3159..3398 -
1691679212.9742558-CDS-H-elongata_contig15820:3158..33981691679212.9742558-CDS-H-elongata_contig15820:3158..3398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 3159..3398 -
1622929932.5658069-CDS-H-elongata_contig15820:3594..41221622929932.5658069-CDS-H-elongata_contig15820:3594..4122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 3595..4122 -
1691679212.9859047-CDS-H-elongata_contig15820:3594..41221691679212.9859047-CDS-H-elongata_contig15820:3594..4122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 3595..4122 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.5878992-UTR-H-elongata_contig15820:4122..41461622929932.5878992-UTR-H-elongata_contig15820:4122..4146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15820 4123..4146 -
1691679212.9950697-UTR-H-elongata_contig15820:4122..41461691679212.9950697-UTR-H-elongata_contig15820:4122..4146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15820 4123..4146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15820.3777.1

>prot_H-elongata_contig15820.3777.1 ID=prot_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYN
EVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCE
GQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFD
TTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSD
YLTIANNEVYNNVNHGIIASKRCNNLKIYENEVYNGGADAVGIFLHRSSD
SCEIYG
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mRNA from alignment at H-elongata_contig15820:3159..4146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15820.3777.1 ID=mRNA_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at H-elongata_contig15820:3159..4146- (Himanthalia elongata Himel1 dioecious)
ATCCTTGACGATGACGATGACATCATGTACAGCCCTACTAGCGTGACAGG CAAGTGGCTTCTCGCTTCTGAAATGTTTGTCCTCAGAGGGTCCGTCTTCT ACTGTCGTGGCACAAGCATAGGCGGTGACTGTGACGAGCTGCGCATCCAA TCCATCAACTCCACGGACTACAACGAGGTCCGCGGTCACGGTGGCAGCCT CTATTTCGAGGATACTCTCGTCACCTCGTGGGACACCCCGAACAAGACCC CACAGGAGGTGTATGAGGATGGTCGTTCGTTCATCAACTGCGTATCTGAG TACGAATCAGATGAGACTTGTGAGGGGCAGCCCAAAAATGACTATGGAGA GTGCCGCATGGACATAATTGATTCGGAGATGGGCTACTTGGGATGGTTCG ACTCGGAATCATATGGCTTGACCTGGAAGGTTCGCGGGTTTTGCGCCGAC AAGAGCAACCCGGGGGTATTCGACACTACAAACGTGTACGGTGACATCAA GAACTCCGATATTCACCACATGTACTACGGCATGTATTCCTACGGCCACC AGGTAATATGTGGTAATATCAGGGTCACATCATTACAATAGAACGGTTAT ACAATATATGATTAAGTTGCCTTTTAAGTCCCGATGCATAGCTTTGCGCC TTGCATTCGTGCCTCTGTCATTCGTGCATCCATCCTGACAATACATGTGC ATCCGATGCGACTATATCACGTCCGTCTTTGCTTGTGGAACGTTATAGGG TGGCGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCG ACCCCCACGACGACTCGGACTACCTCACCATCGCCAACAATGAGGTCTAC AACAACGTCAATCATGGCATCATCGCCTCAAAGCGCTGCAACAACCTCAA GATCTATGAAAACGAGGTTTACAACGGCGGCGCAGATGCCGTGGGCATCT TCTTACATCGAAGTTCTGACAGCTGCGAGATTTACGGC
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Coding sequence (CDS) from alignment at H-elongata_contig15820:3159..4146-

>mRNA_H-elongata_contig15820.3777.1 ID=mRNA_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig15820:3159..4146- (Himanthalia elongata Himel1 dioecious)
ATGTACAGCCCTACTAGCGTGACAGGCAAGTGGCTTCTCGCTTCTGAAAT
GTTTGTCCTCAGAGGGTCCGTCTTCTACTGTCGTGGCACAAGCATAGGCG
GTGACTGTGACGAGCTGCGCATCCAATCCATCAACTCCACGGACTACAAC
GAGGTCCGCGGTCACGGTGGCAGCCTCTATTTCGAGGATACTCTCGTCAC
CTCGTGGGACACCCCGAACAAGACCCCACAGGAGGTGTATGAGGATGGTC
GTTCGTTCATCAACTGCGTATCTGAGTACGAATCAGATGAGACTTGTGAG
GGGCAGCCCAAAAATGACTATGGAGAGTGCCGCATGGACATAATTGATTC
GGAGATGGGCTACTTGGGATGGTTCGACTCGGAATCATATGGCTTGACCT
GGAAGGTTCGCGGGTTTTGCGCCGACAAGAGCAACCCGGGGGTATTCGAC
ACTACAAACGTGTACGGTGACATCAAGAACTCCGATATTCACCACATGTA
CTACGGCATGTATTCCTACGGCCACCAGATGTACAGCCCTACTAGCGTGA
CAGGCAAGTGGCTTCTCGCTTCTGAAATGTTTGTCCTCAGAGGGTCCGTC
TTCTACTGTCGTGGCACAAGCATAGGCGGTGACTGTGACGAGCTGCGCAT
CCAATCCATCAACTCCACGGACTACAACGAGGTCCGCGGTCACGGTGGCA
GCCTCTATTTCGAGGATACTCTCGTCACCTCGTGGGACACCCCGAACAAG
ACCCCACAGGAGGTGTATGAGGATGGTCGTTCGTTCATCAACTGCGTATC
TGAGTACGAATCAGATGAGACTTGTGAGGGGCAGCCCAAAAATGACTATG
GAGAGTGCCGCATGGACATAATTGATTCGGAGATGGGCTACTTGGGATGG
TTCGACTCGGAATCATATGGCTTGACCTGGAAGGTTCGCGGGTTTTGCGC
CGACAAGAGCAACCCGGGGGTATTCGACACTACAAACGTGTACGGTGACA
TCAAGAACTCCGATATTCACCACATGTACTACGGCATGTATTCCTACGGC
CACCAGGGTGGCGTGTGGACGAACAACAAGATGCACGACAACCACCAGTA
CGGTTTCGACCCCCACGACGACTCGGACTACCTCACCATCGCCAACAATG
AGGTCTACAACAACGTCAATCATGGCATCATCGCCTCAAAGCGCTGCAAC
AACCTCAAGATCTATGAAAACGAGGTTTACAACGGCGGCGCAGATGCCGT
GGGCATCTTCTTACATCGAAGTTCTGACAGCTGCGAGATTTACGGCGGTG
GCGTGTGGACGAACAACAAGATGCACGACAACCACCAGTACGGTTTCGAC
CCCCACGACGACTCGGACTACCTCACCATCGCCAACAATGAGGTCTACAA
CAACGTCAATCATGGCATCATCGCCTCAAAGCGCTGCAACAACCTCAAGA
TCTATGAAAACGAGGTTTACAACGGCGGCGCAGATGCCGTGGGCATCTTC
TTACATCGAAGTTCTGACAGCTGCGAGATTTACGGC
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