mRNA_H-elongata_contig15812.3773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15812.3773.1
Unique NamemRNA_H-elongata_contig15812.3773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: D8LC26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 5.980e-113
Identity = 166/189 (87.83%), Postives = 178/189 (94.18%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGK-RLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIVQTQE 564
            MKTLL+TR+V IP+ V +DVK+R+VTV GPRGEL QSFKHLNLD+QK GK +LRVDLWFGNRKQ LACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITG+TVEIRNFLGEKRVRRVELA GVDYVRT+DVKDQIELSGNDI+AVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK+NIVQ  E
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQ-LACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEDE 188
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A836CAK5_9STRA (Ribosomal protein L6, alpha-beta domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK5_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.080e-97
Identity = 141/189 (74.60%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKI--GKRLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIVQTQ 561
            MKT+L+TR++ IP+ V +DVK+R+V+V+GPRG L+++FKHLNLDIQK   GK+LRVDLWFGNRKQ LACIRT+CSH+EN+ITGVTKG+LYKMRFCYAHFPINV++T RTVEIRNFLGEKRVRRV L +GVDYVR+  +KDQIELSGNDI  VS  AARI Q+ +VK KDIRKFLDGIYVSEK NIVQ +
Sbjct:    1 MKTVLATRYIDIPEGVKVDVKSRVVSVEGPRGSLTRNFKHLNLDIQKADGGKKLRVDLWFGNRKQ-LACIRTVCSHIENLITGVTKGFLYKMRFCYAHFPINVTLTDRTVEIRNFLGEKRVRRVVLCDGVDYVRSTTIKDQIELSGNDIADVSNMAARISQACTVKNKDIRKFLDGIYVSEKTNIVQEE 188
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BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7S2XV97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV97_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.920e-95
Identity = 140/181 (77.35%), Postives = 166/181 (91.71%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGK-RLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+L+TRFV+IPD V L+VKAR V+V+GPRG+L ++FKH +LD++ +GK +LRVDLWFGNRKQ LACIRTICSH+ENMITGVTKG+LYKMRF YAHFPINV++  RTVEIRNFLGEKRVRRVEL EGV YVRT++VKDQIEL+GND+ AVS+TAA+IQQST+VK KDIRKFLDGIYVS+K
Sbjct:    8 MKTILATRFVEIPDGVQLNVKARTVSVEGPRGKLERAFKHQSLDMRLVGKNKLRVDLWFGNRKQ-LACIRTICSHIENMITGVTKGFLYKMRFVYAHFPINVTLVDRTVEIRNFLGEKRVRRVELMEGVTYVRTSNVKDQIELTGNDLTAVSLTAAQIQQSTTVKNKDIRKFLDGIYVSQK 187
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BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7S2GU27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GU27_9STRA)

HSP 1 Score: 272 bits (695), Expect = 9.410e-91
Identity = 126/181 (69.61%), Postives = 165/181 (91.16%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGKR-LRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+L++R ++IP+ +D+ +KAR VTVKGPRGEL+++FKH+++D++K+G + +RVD+WF  R QQLAC+RTICSH++NM  GVT+G+LYKMRF Y+HFPINV+++G TVEIRNFLGEKRVR+VEL EGV+YVR+ADVKDQIELSGNDI AVS+TAARIQQ+T+++ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRSIEIPEGIDVTIKARNVTVKGPRGELTRNFKHIDMDLKKVGSKFIRVDVWFATR-QQLACVRTICSHIDNMFVGVTQGFLYKMRFVYSHFPINVALSGNTVEIRNFLGEKRVRKVELLEGVNYVRSADVKDQIELSGNDIAAVSLTAARIQQATNIRHKDLRKFLDGIYVSEK 180
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BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: W7TGP7_9STRA (60s ribosomal protein l9 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGP7_9STRA)

HSP 1 Score: 270 bits (690), Expect = 7.130e-90
Identity = 133/193 (68.91%), Postives = 163/193 (84.46%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIG---------KRLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIV 552
            MK +L+T+ V IP+ V L +K+R VTVKGPRGELS++FKHLN+  + +G         K+L+VDLWF NRKQ LA IRT+CSH+EN++TGVTKG+LY+MRF YAHFPINVS+T +TVE+RNFLGEKRVRRVEL  GV+YVR++DVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +IV
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQ-LATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7R9W890_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W890_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.720e-89
Identity = 128/184 (69.57%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGKR-LRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNI 549
            MKT+L++R ++IPD V+ +V AR VT+KGPRG L++ FKH+++D++K+GK+ +RVD+WF NRKQ LAC+RTICSH+ENM  GVT+G+ YKMRF Y+HFPINVS+ G+TVEIRNFLGEKRVR+VEL +GV YVRTADVKDQIELSGNDI  VS+TAARIQQ T+   KD+RKFLDGIYVSEK  I
Sbjct:    3 MKTVLASRTIEIPDGVEFEVTARKVTIKGPRGTLTREFKHIDMDLRKVGKKFVRVDIWFANRKQ-LACVRTICSHIENMFVGVTQGFCYKMRFVYSHFPINVSLNGKTVEIRNFLGEKRVRKVELCDGVQYVRTADVKDQIELSGNDIAMVSLTAARIQQCTNTTNKDLRKFLDGIYVSEKGKI 185
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A6U3WAV7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3WAV7_9STRA)

HSP 1 Score: 265 bits (676), Expect = 7.610e-88
Identity = 126/181 (69.61%), Postives = 158/181 (87.29%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGKR-LRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+L++R + IP+ VD+ + AR VTV GPRG LS+ FKH+ +D++KIGK  +RVD+WF  RKQ LAC+RTICSH++NM+ GVT+G+LYKMRF Y+HFPINVS++G TVEIRNFLGEKRVR+VEL EGV YVR+ADVKDQIEL+GNDI  VS+TAA+IQQ+T+V+ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRTIAIPEGVDVSINARSVTVTGPRGTLSRDFKHIQMDLKKIGKSSIRVDIWFATRKQ-LACVRTICSHIDNMMVGVTQGFLYKMRFVYSHFPINVSLSGNTVEIRNFLGEKRVRKVELLEGVKYVRSADVKDQIELAGNDIALVSLTAAKIQQATNVRHKDLRKFLDGIYVSEK 180
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7S1BA91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BA91_9STRA)

HSP 1 Score: 265 bits (676), Expect = 7.870e-88
Identity = 126/181 (69.61%), Postives = 160/181 (88.40%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIG-KRLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT LS++ + IPD V++DV  R+VTVKGPRG L+Q+FKH+N+DI+K+  K LRV+LW+  RKQ LAC+RTICSH+ENM+TGVT+G++YKMRF Y+HFPINV+++G  VEIRNFLGEKRVR+V+L  GV +VRTADVKDQIELSGNDI AVS+T A+IQQ+T+V++KD+RKFLDGIYVSEK
Sbjct:    2 MKTKLSSQSLAIPDGVEVDVSCRVVTVKGPRGSLTQAFKHVNMDIRKLNAKYLRVELWWATRKQ-LACVRTICSHIENMMTGVTRGFIYKMRFVYSHFPINVNLSGENVEIRNFLGEKRVRKVQLLPGVTFVRTADVKDQIELSGNDINAVSLTCAQIQQATNVRKKDLRKFLDGIYVSEK 181
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BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7R9YBB6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBB6_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.300e-86
Identity = 131/189 (69.31%), Postives = 155/189 (82.01%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGK-RLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIVQTQE 564
            M+ +LS+R V IP+ V ++ K R VTV GPRGEL++ F HL +D+Q +    L+VDLWFG  KQ+ ACIRT+CSH+ENMITGVTKG+LYKMRFCYAHFPI V+I GR VEIRNFLGEKRVR+V L EGVD +RT  VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  IVQ ++
Sbjct:    1 MRQILSSRLVSIPEGVTVEAKCRTVTVSGPRGELTRKFGHLKVDMQLVSADTLKVDLWFGTLKQR-ACIRTVCSHIENMITGVTKGFLYKMRFCYAHFPIIVAIEGRNVEIRNFLGEKRVRKVALMEGVDALRTESVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKGTIVQDED 188
[Close]
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Match: A0A7S1U0E8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0E8_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.860e-86
Identity = 133/189 (70.37%), Postives = 155/189 (82.01%), Query Frame = 1 
Query:    1 MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIG-KRLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIVQTQE 564
            M+ +L+TR V IP+ V ++ K R VTV GPRG L++ F HLN+D+QKI    L+VDLWFG  KQ+ ACIRT+CSHVENMITGVTKG+LYKMRFCYAHFPI V+I  R VEIRNFLGEKRVRRV L +GVD VRT +VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  IV  ++
Sbjct:   14 MRQILATRSVAIPEGVTVEAKCRTVTVTGPRGSLTRKFGHLNVDMQKISDSELKVDLWFGTLKQR-ACIRTVCSHVENMITGVTKGFLYKMRFCYAHFPIIVAIEQRNVEIRNFLGEKRVRRVALLDGVDAVRTDNVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKTTIVLDED 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15812.3773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC26_ECTSI5.980e-11387.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAK5_9STRA2.080e-9774.60Ribosomal protein L6, alpha-beta domain-containing... [more]
A0A7S2XV97_9STRA1.920e-9577.35Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2GU27_9STRA9.410e-9169.61Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
W7TGP7_9STRA7.130e-9068.9160s ribosomal protein l9 n=2 Tax=Monodopsidaceae T... [more]
A0A7R9W890_9STRA1.720e-8969.57Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U3WAV7_9STRA7.610e-8869.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BA91_9STRA7.870e-8869.61Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7R9YBB6_9STRA1.300e-8669.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U0E8_9STRA2.860e-8670.37Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15812contigH-elongata_contig15812:106..5779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.2e-87
Seed eggNOG ortholog2880.D8LC26
Preferred nameRPL9
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0097@1,KOG3255@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L6, alpha-beta domain
Ec32 orthologEc-20_004190.1
Exons4
Model size567
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15812.3773.1prot_H-elongata_contig15812.3773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15812 106..5779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.7643328-CDS-H-elongata_contig15812:105..2121622929931.7643328-CDS-H-elongata_contig15812:105..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 106..212 -
1691679212.835749-CDS-H-elongata_contig15812:105..2121691679212.835749-CDS-H-elongata_contig15812:105..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 106..212 -
1622929931.7766852-CDS-H-elongata_contig15812:1276..13741622929931.7766852-CDS-H-elongata_contig15812:1276..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 1277..1374 -
1691679212.8476393-CDS-H-elongata_contig15812:1276..13741691679212.8476393-CDS-H-elongata_contig15812:1276..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 1277..1374 -
1622929931.7862844-CDS-H-elongata_contig15812:1622..17951622929931.7862844-CDS-H-elongata_contig15812:1622..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 1623..1795 -
1691679212.8576937-CDS-H-elongata_contig15812:1622..17951691679212.8576937-CDS-H-elongata_contig15812:1622..1795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 1623..1795 -
1622929931.7989576-CDS-H-elongata_contig15812:5590..57791622929931.7989576-CDS-H-elongata_contig15812:5590..5779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 5591..5779 -
1691679212.867476-CDS-H-elongata_contig15812:5590..57791691679212.867476-CDS-H-elongata_contig15812:5590..5779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15812 5591..5779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15812.3773.1

>prot_H-elongata_contig15812.3773.1 ID=prot_H-elongata_contig15812.3773.1|Name=mRNA_H-elongata_contig15812.3773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
MKTLLSTRFVKIPDAVDLDVKARIVTVKGPRGELSQSFKHLNLDIQKIGK
RLRVDLWFGNRKQQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPIN
VSITGRTVEIRNFLGEKRVRRVELAEGVDYVRTADVKDQIELSGNDIKAV
SMTAARIQQSTSVKRKDIRKFLDGIYVSEKMNIVQTQE*
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mRNA from alignment at H-elongata_contig15812:106..5779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15812.3773.1 ID=mRNA_H-elongata_contig15812.3773.1|Name=mRNA_H-elongata_contig15812.3773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5674bp|location=Sequence derived from alignment at H-elongata_contig15812:106..5779- (Himanthalia elongata Himel1 dioecious)
ATGAAGACCCTGTTGTCAACACGCTTTGTCAAAATCCCGGATGCGGTCGA
TCTCGATGTCAAGGCCCGAATCGTGACGGTCAAGGGCCCGAGGGGCGAGC
TCAGCCAGAGCTTCAAGCACCTAAACCTGGACATCCAAAAGATTGGCAAG
AGGCTGCGCGTGGACCTGTGGTTCGGGAACCGGAAGCAGGTTGGTTTGTT
AGGCAGCGGAGTAGAAGAGCTTTTATCAACCCCCCACCCAGATAAGCCTA
CTTCTCCGAAAATGCCACAGCACGAAATGTTTAAGAACTCGCGCTCGTCG
TTGTAGAAATGGAAAATCGCGGCGCCGTGTCGGAAGAGTAGACCTACTTC
CGTAGTGTGAACTAAACCAACATTTCTACAGACAGTTAGTACACAGCCAT
ACAATCAGGTGCCATGGGACGTCGAGCCGCAAGCTTCCGTCCTTTATGTC
AACGAGATGCGCCTTTCGTTGCTCTTACGTATGCTTAACTTAGCCTACCG
ATTGTGCGCCGATATTTTGGCGCTAGTCGTACTTGACAGCCTTTGGAGTT
TTCTCGTGTCCGTTCGATACCTCACACATAGGCTTGTAATGCCTAATGGT
GGTCATAGGCTGCATTTAATTGTTTTTAACATAAACCAATCACTGTACTA
AGATGCCAATCGAGTTTGTGCTCTAAAAGAAGGAAGAAAGATCAACGGCT
CATATCGTGGTCACAACCCACCGCGTGCTCGACAAGGAATCCGAGATTGC
GACAATAATTATATTCTGGACTAATAACTTGGGAACATCCAAATTCAATA
GCGCAGACTGTTTCACTTTCGAGGGTTTAATTTGAGTTCATATAATATAT
GTTTTTAAAGAAAAGTCCAAAGCTATAAACTCCTGATTTTTTTTAGGTGA
CAAACCGGTTCATGGTAGGCCTGGGCTTTCTAACGGCCTCTCTTCAGATG
AGTAATTGCCGTGCAGTAAATATGTCTGTTACTGTATCGCAAATATCCAC
TCTACTAATAGTGGGTGTGGGGAAATAGAGGGGTGCAATAATGAGTCCAT
GGGCTTACCTGAATAGCTGAATAGGGTTTCACTCGTTACTCAAGCTACCT
TGAGGACTACTGGCTCAGTGTCGTAGAACGCTCGGTGGTGAACGCCATCG
GTATACAATTGCGTGACCTGATGGAATCGGGATTGGCCTGATGGCAGTTG
ACGGTAGAGATGGATGCCGTCACGGAGAAACGAAAGGATCGCGGGAGTAC
GCACCATATTCAGCCTGGGTTGAGAGAATGAGCAGGCTGACGCGGGATGG
GACTGCTGAACCCGTCTCGCAAGACCAAATTCTCACGCGCGAACGGGGAC
AGGGGAAAATTGATTCTCCCTTTCATCGATTTGCATTAAACCGCCCAAAC
CAGCATGACACTTAAGGGGGAGCCACGCCGTTTTGCGAATACTCTCCCCT
CCCTGTTCAGCTGACCACAACCAAGAGGCAACCAAATCCGGTTATTTTTT
CTATGCTATACTGTATGCGATGACCACACACACATTTTATTCTTAAAATA
TTACCTAATGCTGAACAAAACCTGCCCTTGAGTTTTTCTTTGAAACATGT
AAAATCAGTCCAACCCTCCGAACATGCACGCCTTCTTAGCACCGTGAGAG
GTGCAGTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACGAGCACA
TAAAGCTCATATTATTTTAAACATATATAAACTCATTTCAACTCTCCGAA
TATCCAGGCCTTCGTAGACTCGTGAGAGGTGCAGTACAGGGGACCAACTT
TCGTCAGGTTTGAATGTGTGCATTTCTACCTTTTTGAGCATAAATCGTCG
CACAACATGTGATAAATCGTGTTCCCCAATAATAGTAAATTAATCGGGTC
AATTGTATAATGTCGGGGAAGGGATCCCATCATTATCCCGAACACTTACA
TAATTATAGTCATCCATGTCAGGACGCTAAACATAAGCCTGGAAACGAGA
AGTAAAACTATGGAGATTACTAAAACGCCAGATACTAAATGTACAACCAC
GTGCTAGATGCGGGGTGTACGGTCTGGAGAAACACATGTCCTTTATCTCC
GTATCAAACTTTTTTCAACTGCCCTTATAGGCCCTAAGCTCTATTTCCCG
CCATTCGTGCTGTAAAATGAAGGTGTGGGTGTTGAAAAAGGATTGATTGA
GTTACTATGTATTTTAGAGAGAAAAAAAACCCAGGTAGGGTTGACCACCG
ACCAATGCCTAAAACAAGGAGCTCGCGGGCGCACTATTTTTGGTTAAACT
TCATTCAGCGCATAAGTTCAGAGAGGCTATGTGTGGCTTGCCGCACATCG
AAATTTTGGGTCCGCGCTTTTTGAAAAGCTATTTTTCTTCTTGCAGGCAC
TTTTTCATCTATAGCTTTTCGCTTACTGTACTTGTGGTAGACTAAGCTTC
TAAATATTGAAAACAGCTGTCTCGGAGGTGTCATGCCTCGCAAATACATC
GAAACTCTACAACATGCGGCGTAGTTAGCCAAATATTTTGGCCCAAACGG
CTGCTGAAGTGTGCGCGTAGTATACCACGCCTGCGGCCTATATTAGGCCC
TGTCGCCCACCCCTTTCCCTCTTAAAAAACCCCTCAACTTTTACTATAAC
AGACCTTTAAAATCGTCGTAGTCCATCAGGGTGCACTGCGCCGGTAACCT
CCCTCCCTCTGGGGAGCTATCCCAATCCCCATAATATGTGACTATGCTCA
TGCATCAGAACGTCTAATTTCCCTCCCTCCCCATCCCCTCCTATACTCCG
CCTTTTGGTTTGGTAACCCCACATGGGGAATAATAATGTAGTGGGTGTAG
GTGTGGTTATCGAATATCACAGAGTAATAATCAACCCCGTAGAATTACCT
CCTGCTTGTTGTCAGCTTAACAAATATAAGGGAAAATGTGGTTTGCATGT
CCTCGTTCGCGCCTGAGAATTTGGTCTCGCGAGATGGTTCAGCAGTCCCG
TACCGCATCAGCCTGCTCATCTGGTGGGGTACTCTCGGGAATCTCTCGAT
CCTCTCGTTTTCCGCGACGGTGTCCATCTCTACCGTCAATCGCCATCGGG
ACAATCCCGAATTCATCGGGTCACGCAATTGCGTATCGATGGCGTTTACC
GCTGACACTGAGCCAGCAGTCCTTAAGGTAGCTCGAGTAACGGATGAAGC
CTATTCATGTAACCCCATAGACCAATTATTGTACGCCTCTCTTTCCCCAC
ATCCACTATTGGTACAGTGGGCATGTGCGATACAGTCACAGACAGTAGTA
TCGGAGGCCGTAGTAGAGATCAGTTCTCGATTTGTACATTTGGCACAAAG
ACGTAAGGTAGGTAAACATATACCATGTCGGCGATATACACGAAGAGAGA
CCTACGTCGCGCACTCTCTCTGTCCACACATCACCCCCCTGTACACAAGT
TAGTCAGTGTGTTTCTTCCCCACCATGATGCCCCATCCTACTTGCTATAT
AGCGCGTAGAAAAAATGCACTGTCTCCCCGACTTCCAGGTTTGGCGCATT
TTTCGAGTACTTCTCTTCTAGTATATGCCGATATTGCCGTATAAGTTGTT
TTTCGCAACGACAGTTTCCAGAATAAAACTCCGCCGTGCGTGTCCTAACA
ACATCGGACGAAAATCTCGCGAGCCACTCGTTGCACTGTAATACTAGCGC
CAATAGAGCCCCAGTGTGCTCCTTTAGCACACGATAGTTTTTCGTAGCAC
TAGCTTAACAACAGTGATTTGTTTCCCACATTCCCGACAACCATTACTTG
ACTGGTTGACTCGAAAGCGCAGCCTATCAAAAAAAAATACAAAGCGCAAA
CGTCTAAGTAAATGGTCACCTACTTTCTTCGCTGCTTCCGTGCGTCGTGG
TGTCGCACTCGTCTTCCTCATCCTGGTAACCGATGTATTGGAACGGACGG
TCCTCTGCGTCTGCTCGGCGTCGATGTCGGAGAGCAGCTCGCCTGTATCC
GCACGATCTGCTCCCACGTCGAGAACATGATCACGGGTGTGACGAAGGGC
TACCTCTACAAGATGCGCTTCTGTTACGCTCACTTCCCCATCAACGTTTC
GATTACCGGGCGCACCGTGGAGATCAGGAACTTCCTTGGCGAGAAGCGCG
TTCGCAGGTACGATGATGGTGGAGAAAGACACGGGATGTAAAGCGTAACG
CCTCTTCTAGACGTCGCGGCCGCATATATTTTTTTAGGCGACACTCGCAC
ATTCAGTGTATCGGTGGTGCGCTTTGGCGATAGTGTGCCGTTTAGTTGGG
TTTAAAAAAAAAAAAAAACTTTCTCCGAGCTCCCGTCTCCATTTCTTTGC
CCCTTTTCCGCCTCAACGGGTTTCCGACGGCCGCGAACTTGGCTGTTTGG
TAAAGGGTGGAGCTTGCCGAAGGCGTAGACTACGTCCGTACGGCTGACGT
GAAGGACCAGATCGAGCTCAGTGGCAACGACATCAAGGCGGTCTCCATGA
CCGGTGAGTCCCAATCGTTTGACGGCGTGCACTAGAAGATGTTCTCTTGA
CTTTGTGGCAAGATAAGAAAAACACGCGCAAAGAACAGTAATGCCTCGGA
CCCGTCATATAATTGCTTCTCTCTGCTTCTCTCCCATGTATGGAAAACCC
TATGATATCTGTCGTTCAGTTGAAGTAATTCCTTGCGAGATTCTCGGCGG
CATTCAACCACGTCGTGTTGCGTGAGCCATCGTATAGAGTTCTGCTCGAT
TCCATCTCACCGCGCCAAATACAGAGGGTGTTGAAACGGTTGATAGTGAT
TAAAGCCCCCCCCCCCCCACCGCTTTTTCCACCGTTTCTCAAACTCGAAC
TCCCAATGCAATGTACCATGGCGATGTCGATGGGGTCGCCGAGAGAGGTA
GTATTTTTGTTAAACCCTTTCGGAACTGGATTTTAAGTTTTATATTGAAT
TTAGTATTTAAGAAATAGATCGAGTTCCATAGGGGTTAAATATAACCTAG
CTGGTATTTTTCTTGTTTCTAGTCAGAAAGCCTTGTTGCCATACACCCTA
TTCCCTGTTTAGCGTCTCAGTGTTCAGAGAACCTCCACGTTAGTCATCTG
CTCGTGGACGTATCCCCACGACCCCCACATGCAAGCAATCTCTCTTCATG
GGAAGGACGTGGAACCGTGATTATTAGCACATAGTTGCGTATATATAACA
TACGCGGGGAGAGGAAACGCCTCCCTCCCCCCTACGTTCTTCGGAAGATG
CGTGGTCCAATGGCCTCACTTATAAGGCATGCAAACTTGAGCAAGTTGTT
AAATTAGATCAAGGTGGAGTCGAAAAAAGGCTATGTTGAAATCTTCCTCA
ACTATCTAAATCGTTTTTTGTACGTATTGACCCATAAAATGTAAATATAT
TTTAATATAAAAATACCGAAGTCATACCCTAAAGAAAGTCTTAAGAGGGC
CTTGCTTTCAACTTAAAAGTGACTAGCGGTGCATAGGCCTCTTTACCCCA
CTTCTCCCCTTTCCCCGTTCGCCGCATGCTTCACTTTTGCGCGTATGTCT
TGCGGGAAAATCCTCAGCGGCGCGCATTCAGCAGTCGACGTCCGTGAAGC
GGAAGGATATCCGTAAGTTCCTGGACGGTATCTACGTGAGCGAAAAGATG
AACATTGTCCAAACCCAGGAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig15812:106..5779-

>mRNA_H-elongata_contig15812.3773.1 ID=mRNA_H-elongata_contig15812.3773.1|Name=mRNA_H-elongata_contig15812.3773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig15812:106..5779- (Himanthalia elongata Himel1 dioecious)
ATGAAGACCCTGTTGTCAACACGCTTTGTCAAAATCCCGGATGCGGTCGA
TCTCGATGTCAAGGCCCGAATCGTGACGGTCAAGGGCCCGAGGGGCGAGC
TCAGCCAGAGCTTCAAGCACCTAAACCTGGACATCCAAAAGATTGGCAAG
AGGCTGCGCGTGGACCTGTGGTTCGGGAACCGGAAGCAGATGAAGACCCT
GTTGTCAACACGCTTTGTCAAAATCCCGGATGCGGTCGATCTCGATGTCA
AGGCCCGAATCGTGACGGTCAAGGGCCCGAGGGGCGAGCTCAGCCAGAGC
TTCAAGCACCTAAACCTGGACATCCAAAAGATTGGCAAGAGGCTGCGCGT
GGACCTGTGGTTCGGGAACCGGAAGCAGCAGCTCGCCTGTATCCGCACGA
TCTGCTCCCACGTCGAGAACATGATCACGGGTGTGACGAAGGGCTACCTC
TACAAGATGCGCTTCTGTTACGCTCACTTCCCCATCAACGTTTCGATTAC
CGGGCGCACCGTGGAGATCAGGAACTTCCTTGGCGAGAAGCGCGTTCGCA
GCAGCTCGCCTGTATCCGCACGATCTGCTCCCACGTCGAGAACATGATCA
CGGGTGTGACGAAGGGCTACCTCTACAAGATGCGCTTCTGTTACGCTCAC
TTCCCCATCAACGTTTCGATTACCGGGCGCACCGTGGAGATCAGGAACTT
CCTTGGCGAGAAGCGCGTTCGCAGGGTGGAGCTTGCCGAAGGCGTAGACT
ACGTCCGTACGGCTGACGTGAAGGACCAGATCGAGCTCAGTGGCAACGAC
ATCAAGGCGGTCTCCATGACCGGGTGGAGCTTGCCGAAGGCGTAGACTAC
GTCCGTACGGCTGACGTGAAGGACCAGATCGAGCTCAGTGGCAACGACAT
CAAGGCGGTCTCCATGACCGCGGCGCGCATTCAGCAGTCGACGTCCGTGA
AGCGGAAGGATATCCGTAAGTTCCTGGACGGTATCTACGTGAGCGAAAAG
ATGAACATTGTCCAAACCCAGGAGTAACGGCGCGCATTCAGCAGTCGACG
TCCGTGAAGCGGAAGGATATCCGTAAGTTCCTGGACGGTATCTACGTGAG
CGAAAAGATGAACATTGTCCAAACCCAGGAGTAA
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