mRNA_H-elongata_contig1581.3772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1581.3772.1
Unique NamemRNA_H-elongata_contig1581.3772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.960e-48
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:   51 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 160
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.070e-47
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:   22 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 131
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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.360e-47
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  153 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 262
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.200e-46
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  276 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 385
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.640e-45
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+L AFSDANW ++PD  RSTSSY++M++ AP+SFK GLQ LT  STMEAEL+AAALTMKEAVFCSNM+ ELGF + FG VPLYI+NT+ LHV GN+ YS R KHI
Sbjct:  372 KRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHI 481
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.570e-44
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  836 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 945
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.380e-43
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELG  + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  497 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 606
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.860e-41
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+LA FSD+NW N+PD G+STSSY+ +LANAP+SF+ GLQGLTA STMEAELVA+AL M EAVF SNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct: 1505 KKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 1614
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 6.160e-40
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF+L AF+D+NWGN+PD G+STSS++ ML +AP++FK GLQ LT QSTME ELVAAAL +KEAVFCSN++ ELGF +    VPLY DNT+ LH  GNR+YS   KHI
Sbjct:  559 KRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHI 668
[Close]
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.390e-38
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 330
            K+GGF L A SDANWGN+PD  +S SSYI+M++ AP+SFK GLQ LTA ST+EAELVAAAL MKE +FC+NM+ ELGF   F S PLYI NT+ LHV GN+T+S R KH+
Sbjct:  530 KRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHV 638
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE3.960e-4869.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX7_9PHAE2.070e-4769.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNV2_9PHAE2.360e-4769.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE9.200e-4669.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J6N1_9PHAE1.640e-4570.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE5.570e-4469.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE2.380e-4368.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE2.860e-4166.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE6.160e-4064.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE1.390e-3865.45CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1581contigH-elongata_contig1581:15861..16190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.3
Seed ortholog evalue3.2e-13
Seed eggNOG ortholog37727.XP_002147152.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.7304347-CDS-H-elongata_contig1581:15860..161901622929931.7304347-CDS-H-elongata_contig1581:15860..16190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1581 15861..16190 +
1691679212.8229306-CDS-H-elongata_contig1581:15860..161901691679212.8229306-CDS-H-elongata_contig1581:15860..16190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1581 15861..16190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1581.3772.1prot_H-elongata_contig1581.3772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1581 15861..16190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1581.3772.1

>prot_H-elongata_contig1581.3772.1 ID=prot_H-elongata_contig1581.3772.1|Name=mRNA_H-elongata_contig1581.3772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQS
TMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGN
RTYSPRAKHI
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mRNA from alignment at H-elongata_contig1581:15861..16190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1581.3772.1 ID=mRNA_H-elongata_contig1581.3772.1|Name=mRNA_H-elongata_contig1581.3772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig1581:15861..16190+ (Himanthalia elongata Himel1 dioecious)
AAGCAAGGCGGTTTTAGGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAA
CCACCCAGACATCGGTAGATCTACGTCATCGTACATCGTGATGCTGGCCA
ACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGACTGACCGCACAGTCC
ACGATGGAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGT
GTTCTGCTCTAACATGATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGCA
GCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGTCGCCGGCAAC
CGCACCTACAGCCCTCGTGCAAAGCACATC
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Coding sequence (CDS) from alignment at H-elongata_contig1581:15861..16190+

>mRNA_H-elongata_contig1581.3772.1 ID=mRNA_H-elongata_contig1581.3772.1|Name=mRNA_H-elongata_contig1581.3772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig1581:15861..16190+ (Himanthalia elongata Himel1 dioecious)
AAGCAAGGCGGTTTTAGGCTTGCTGCCTTCTCAGATGCCAACTGGGGCAA
CCACCCAGACATCGGTAGATCTACGTCATCGTACATCGTGATGCTGGCCA
ACGCCCCGATCAGCTTCAAAGTGGGACTGCAGGGACTGACCGCACAGTCC
ACGATGGAGGCAGAGCTCGTGGCGGCAGCTCTGACAATGAAGGAGGCGGT
GTTCTGCTCTAACATGATTCTGGAGCTTGGCTTCGATGAGAGCTTCGGCA
GCGTGCCGCTGTACATCGACAACACGTCGGCACTGCACGTCGCCGGCAAC
CGCACCTACAGCCCTCGTGCAAAGCACATCAAGCAAGGCGGTTTTAGGCT
TGCTGCCTTCTCAGATGCCAACTGGGGCAACCACCCAGACATCGGTAGAT
CTACGTCATCGTACATCGTGATGCTGGCCAACGCCCCGATCAGCTTCAAA
GTGGGACTGCAGGGACTGACCGCACAGTCCACGATGGAGGCAGAGCTCGT
GGCGGCAGCTCTGACAATGAAGGAGGCGGTGTTCTGCTCTAACATGATTC
TGGAGCTTGGCTTCGATGAGAGCTTCGGCAGCGTGCCGCTGTACATCGAC
AACACGTCGGCACTGCACGTCGCCGGCAACCGCACCTACAGCCCTCGTGC
AAAGCACATC
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