mRNA_H-elongata_contig158083.3771.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158083.3771.1
Unique NamemRNA_H-elongata_contig158083.3771.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.670e-25
Identity = 63/129 (48.84%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQNASN------KDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TFLV YAPTET   +       KD+FWT+LD A+ EV   + L VLMD NA TG R KG     D KI+GAYGRD +N+NGE
Sbjct:  244 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC---DAKIMGAYGRDIMNNNGE 368
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.790e-25
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD  + EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:   47 KRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 171
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.000e-24
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D K+LGAYGRD +N+NGE
Sbjct:   47 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRGGCC---DAKVLGAYGRDIMNNNGE 171
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.980e-24
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1 
Query:    7 GKKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            GK G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:   46 GKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 171
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.550e-24
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:   47 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 171
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.990e-24
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R   +VG  D K++GAYGRD + +NGE
Sbjct:   47 KRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR---RVGCCDGKMMGAYGRDIMTNNGE 171
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.040e-24
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQNASN------KDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET   +       KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:   79 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 203
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.710e-24
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRTS----ITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G+ GVG+AI+ +    +    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:  224 KRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 348
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.130e-23
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:  155 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 279
[Close]
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.190e-23
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:   10 KKGQGGVGLAIRT----SITRAARPPEFISDRLLNVTLELRGRAKAITFLVAYAPTETQ------NASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQVGSKDIKILGAYGRDTLNDNGE 366
            K+G  GVG+AI+     S+    R  E IS RL+ V L++ GR   +TF+V YAPTET       + + KD+FWT+LD A+ EV   + L VLMD NA TG R  G     D KI+GAYGRD +N+NGE
Sbjct:   47 KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGE 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158083.3771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE4.670e-2548.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE5.790e-2546.51Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KBZ6_9PHAE2.000e-2447.29Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KQ63_9PHAE3.980e-2447.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JII6_9PHAE5.550e-2447.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE5.990e-2446.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KCV1_9PHAE8.040e-2447.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE8.710e-2446.51Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JMB4_9PHAE1.130e-2347.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE1.190e-2347.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158083contigH-elongata_contig158083:1098..1469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog7668.SPU_020204-tr
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.6985312-CDS-H-elongata_contig158083:1097..14691622929931.6985312-CDS-H-elongata_contig158083:1097..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158083 1098..1469 -
1691679212.8125494-CDS-H-elongata_contig158083:1097..14691691679212.8125494-CDS-H-elongata_contig158083:1097..1469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158083 1098..1469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158083.3771.1prot_H-elongata_contig158083.3771.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158083 1098..1469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158083.3771.1

>prot_H-elongata_contig158083.3771.1 ID=prot_H-elongata_contig158083.3771.1|Name=mRNA_H-elongata_contig158083.3771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
NGGKKGQGGVGLAIRTSITRAARPPEFISDRLLNVTLELRGRAKAITFLV
AYAPTETQNASNKDAFWTSLDRAVEEVPRHEQLFVLMDTNAHTGMREKGQ
VGSKDIKILGAYGRDTLNDNGEL*
back to top

mRNA from alignment at H-elongata_contig158083:1098..1469-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158083.3771.1 ID=mRNA_H-elongata_contig158083.3771.1|Name=mRNA_H-elongata_contig158083.3771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig158083:1098..1469- (Himanthalia elongata Himel1 dioecious)
AATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACCTC
CATCACACGTGCTGCACGCCCACCGGAGTTTATCAGTGATCGCTTGCTAA
ATGTTACACTTGAACTACGGGGTCGAGCCAAGGCCATTACGTTTCTTGTG
GCGTATGCCCCCACTGAAACACAGAATGCTAGTAATAAAGATGCATTCTG
GACGAGCTTGGATAGAGCTGTGGAGGAGGTACCTAGACACGAACAGCTGT
TCGTGTTGATGGATACCAACGCCCACACGGGGATGAGGGAGAAGGGACAG
GTGGGGAGCAAGGATATCAAAATTCTCGGTGCCTACGGCCGAGATACCCT
CAACGATAACGGAGAGCTATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig158083:1098..1469-

>mRNA_H-elongata_contig158083.3771.1 ID=mRNA_H-elongata_contig158083.3771.1|Name=mRNA_H-elongata_contig158083.3771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig158083:1098..1469- (Himanthalia elongata Himel1 dioecious)
AATGGTGGGAAGAAAGGGCAAGGTGGAGTAGGGCTAGCTATTAGAACCTC
CATCACACGTGCTGCACGCCCACCGGAGTTTATCAGTGATCGCTTGCTAA
ATGTTACACTTGAACTACGGGGTCGAGCCAAGGCCATTACGTTTCTTGTG
GCGTATGCCCCCACTGAAACACAGAATGCTAGTAATAAAGATGCATTCTG
GACGAGCTTGGATAGAGCTGTGGAGGAGGTACCTAGACACGAACAGCTGT
TCGTGTTGATGGATACCAACGCCCACACGGGGATGAGGGAGAAGGGACAG
GTGGGGAGCAAGGATATCAAAATTCTCGGTGCCTACGGCCGAGATACCCT
CAACGATAACGGAGAGCTATAGAATGGTGGGAAGAAAGGGCAAGGTGGAG
TAGGGCTAGCTATTAGAACCTCCATCACACGTGCTGCACGCCCACCGGAG
TTTATCAGTGATCGCTTGCTAAATGTTACACTTGAACTACGGGGTCGAGC
CAAGGCCATTACGTTTCTTGTGGCGTATGCCCCCACTGAAACACAGAATG
CTAGTAATAAAGATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAG
GTACCTAGACACGAACAGCTGTTCGTGTTGATGGATACCAACGCCCACAC
GGGGATGAGGGAGAAGGGACAGGTGGGGAGCAAGGATATCAAAATTCTCG
GTGCCTACGGCCGAGATACCCTCAACGATAACGGAGAGCTATAG
back to top