mRNA_H-elongata_contig15807.3770.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI) HSP 1 Score: 373 bits (957), Expect = 1.450e-120 Identity = 197/296 (66.55%), Postives = 227/296 (76.69%), Query Frame = 1
Query: 1 MLNRAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAE-LTQAVNSDPGTDAGFSVSDEK--TDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYCHK 879
M +R G+ WEA R++LLR LR VFGH+ FRG QEEA+REV SG DALVVMPTGGGKSLCYQLPAV G+C+V+SPLIALTEDQLRGL EKG+ A S SS+ S++RA VM + L S G V+ EK + A G AA + KLLYVTPE L K G L +AL LA RG++SLLAVDEAHCVSTWGHDFRPAY ++GAFRKK +KGVPC+ALTATAT+EVC D+ KQLG R GSRVLKTSFNR EIHLSV YKDAM+ GGAL+ LV FL+E+RGQSGIVYCHK
Sbjct: 1 MAHRGGVADVLWEARREKLLRALRDVFGHQGFRGKQEEAMREVSSGHDALVVMPTGGGKSLCYQLPAVVADGVCVVISPLIALTEDQLRGLYEKGVEAASLTSSSASRSRAAAVMDDILAYGGGSGSGHSTKEGVTSEKGGPNSRADGARAAPKIKLLYVTPEKLAKGGELTTALAGLAKRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEVCADIKKQLGFREGSRVLKTSFNRAEIHLSVHYKDAMD-GGALEHLVGFLRERRGQSGIVYCHK 295
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A5D2IR01_GOSTO (Helicase ATP-binding domain-containing protein n=7 Tax=Gossypium TaxID=3633 RepID=A0A5D2IR01_GOSTO) HSP 1 Score: 214 bits (544), Expect = 2.240e-64 Identity = 126/286 (44.06%), Postives = 175/286 (61.19%), Query Frame = 1
Query: 16 GLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
G G + R+ L++ LR FGH +FRGNQ EA+ + SG D +MPTGGGKS+CYQ+PA+A GI +V+SPLIAL E+Q+ L+EKGI AE +S+ S+ R K+ +L + S +LLYVTPE++ SG + S L+ + RG+++L+AVDEAHC+S+WGHDFRP+YRK+ + R + ++ VP +ALTATA +V +DV+ L + + VLK+SFNRP I+ VRYKD M+ A DL LK IVYC
Sbjct: 12 GAKGKQRKCGREALVKLLRWNFGHPDFRGNQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVISPLIALMENQVMALKEKGIAAEFLSSTQTSQLR-NKIHEDLDRGQPS---------------------------IRLLYVTPELIATSGFM-SKLKKIHGRGLLNLIAVDEAHCISSWGHDFRPSYRKLSSLRNQ-LQDVPILALTATAIPKVQKDVIDSLNL-QNPLVLKSSFNRPNIYYEVRYKDLMDD--AYADLCDVLKSAGDVCAIVYC 264
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A2I0IIB1_PUNGR (Helicase ATP-binding domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IIB1_PUNGR) HSP 1 Score: 212 bits (539), Expect = 2.370e-63 Identity = 129/290 (44.48%), Postives = 174/290 (60.00%), Query Frame = 1
Query: 22 VGGSWEAHRDE------LLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
GGS + R + L++ LR FGH FRG Q EA+ V SG D +MPTGGGKS+CYQ+PA+A GI +VV PLIAL E+Q+ L+EKGI AE +S+ S A+ K+ +L D+G +LLYVTPE++ +G + S L + SRG+++L+A+DEAHC+STWGHDFRP+YRK+ + R G+P +ALTATA +V DV++ LG++R VLK+SFNRP I+ VRYKD + A DL LK GI+YC
Sbjct: 11 AGGSDKKRRQQPHGKEALVKLLRWHFGHAEFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPAMARPGIVLVVCPLIALMENQVTALKEKGIAAEYLSSTQTSHAK-NKIHEDL----------DSGKPT-----------------LRLLYVTPELIATAGFM-SKLTKIYSRGLLNLVAIDEAHCISTWGHDFRPSYRKLSSLRN-HFPGIPILALTATAVPKVQNDVIESLGLQRPL-VLKSSFNRPNIYYEVRYKDILNDVYA--DLCNLLKTSGNVCGIIYC 267
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A830CNM3_9LAMI (DNA helicase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CNM3_9LAMI) HSP 1 Score: 213 bits (541), Expect = 4.690e-63 Identity = 124/276 (44.93%), Postives = 173/276 (62.68%), Query Frame = 1
Query: 46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
++ L++ LR FG+ +FRG Q EA++ V SG D +MPTGGGKS+CYQ+PA+A +GI +VVSPLIA E+Q+ L+EKGI AE +S+ +KA+ ++ +L D G + +LLYVTPE++ +G +A L + RG++SL+A+DEAHCVSTWGHDFRP+YRK+ + R + G+P +ALTATA +V EDVM+ L + R VLK+SFNRP I+ VRYKD ++ DL +LK IVYC
Sbjct: 21 KEALVKLLRWHFGYSDFRGKQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKQGIVLVVSPLIACQENQVMALKEKGIAAEYLSSTQTAKAK-NEIYEKL------DSGKPS---------------------LRLLYVTPELIATAGFMAK-LTKIHGRGLLSLIAIDEAHCVSTWGHDFRPSYRKLSSLRN-HLPGIPVLALTATAVPKVQEDVMRSLCL-RNPLVLKSSFNRPNIYYEVRYKDLLDD--PYSDLCNYLKTHGNNCAIVYC 263
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A0D2PBS2_GOSRA (ATP-dependent DNA helicase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2PBS2_GOSRA) HSP 1 Score: 214 bits (544), Expect = 7.350e-62 Identity = 126/286 (44.06%), Postives = 175/286 (61.19%), Query Frame = 1
Query: 16 GLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
G G + R+ L++ LR FGH +FRGNQ EA+ + SG D +MPTGGGKS+CYQ+PA+A GI +V+SPLIAL E+Q+ L+EKGI AE +S+ S+ R K+ +L + S +LLYVTPE++ SG + S L+ + RG+++L+AVDEAHC+S+WGHDFRP+YRK+ + R + ++ VP +ALTATA +V +DV+ L + + VLK+SFNRP I+ VRYKD M+ A DL LK IVYC
Sbjct: 12 GAKGKQRKCGREALVKLLRWNFGHPDFRGNQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVISPLIALMENQVMALKEKGIAAEFLSSTQTSQLR-NKIHEDLDRGQPS---------------------------IRLLYVTPELIATSGFM-SKLKKIHGRGLLNLIAVDEAHCISSWGHDFRPSYRKLSSLRNQ-LQDVPILALTATAIPKVQKDVIDSLNL-QNPLVLKSSFNRPNIYYEVRYKDLMDD--AYADLCDVLKSAGDVCAIVYC 264
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: UPI0020092B22 (ATP-dependent DNA helicase Q-like 3 isoform X5 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020092B22) HSP 1 Score: 214 bits (544), Expect = 2.540e-61 Identity = 124/276 (44.93%), Postives = 169/276 (61.23%), Query Frame = 1
Query: 46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
++ L++ LR FGH +FRGNQ EA++ V SG D +MPTGGGKSLCYQ+PA+A GI +VVSPLIAL E+Q+ L+EKG+ E +S+ K + K+ L S +LLYVTPE++ SG + S L + RG+++L+A+DEAHCVSTWGHDFRP+YRK+ + R + G+P +ALTATA +V EDV+K L +++ VLK+SFNRP I+ VRYKD M+ D+ +LK IVYC
Sbjct: 21 KEALVKLLRWHFGHSDFRGNQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGVAVEYLSSTQTVKVK-NKIYENLESGKPS---------------------------LQLLYVTPELIATSGFM-SKLMKIHGRGLLNLIAIDEAHCVSTWGHDFRPSYRKLSSLRNN-LPGIPVLALTATAVPKVQEDVIKSLSLQKPL-VLKSSFNRPNIYYEVRYKDLMDD--PYSDICNYLKSCGNVCAIVYC 263
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: UPI0009BDE54B (ATP-dependent DNA helicase Q-like 3 isoform X1 n=3 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009BDE54B) HSP 1 Score: 216 bits (550), Expect = 3.380e-61 Identity = 129/276 (46.74%), Postives = 170/276 (61.59%), Query Frame = 1
Query: 46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
R+ELL LR FGH +FRG Q +A+ V G D +MPTGGGKSLCYQ+PAVA KGI +VVSPLIAL E+Q+ L++ GIRAE +SS +A+ K+ +L D G + +LLYVTPE++ +G + L+ L R ++ L+AVDEAHC+S WGHDFRP+YRK+ + RK R+ GVP +ALTATA +V +DV++ L M+ VLK SFNRP I+ VRYKD ++ A DL+ LK IVYC
Sbjct: 21 REELLDILRHHFGHSDFRGRQLDAIEAVLCGKDCFCLMPTGGGKSLCYQVPAVAQKGITLVVSPLIALMENQVTALKKNGIRAEYLSSSQNPQAK-EKIYEDL------DSGRPS---------------------LRLLYVTPELIATNGFMYKLLK-LHGRSLLQLIAVDEAHCISAWGHDFRPSYRKLSSLRK-RLPGVPILALTATAVPKVQKDVIESLCMQHPL-VLKASFNRPNIYYEVRYKDLLDD--AYADLLTLLKTSGNVCSIVYC 263
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A6J1HSL2_CUCMA (ATP-dependent DNA helicase n=9 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HSL2_CUCMA) HSP 1 Score: 214 bits (546), Expect = 7.900e-61 Identity = 126/288 (43.75%), Postives = 174/288 (60.42%), Query Frame = 1
Query: 10 RAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
R + G+ E + L++ LR FGH FRG Q E ++ V SG D +MPTGGGKS+CYQ+PA+ATKGI +VV PLIAL E+Q+ L+EKGI AE +S+ + + K+ +L D+G +LLYVTPE++ G +A ++ + SRG++SL+A+DEAHC+STWGHDFRP YRK+ + R R+ VP +ALTATA +V +DV+ LG+ + VL +SFNRP I+ VRYKD ++ L DL LK GI+YC
Sbjct: 9 RGSIGPGNHEYSNESLVKLLRWHFGHSEFRGKQLETIKAVLSGKDCFCLMPTGGGKSVCYQIPALATKGIVLVVCPLIALMENQVMALKEKGISAEYLSSTQSIQDK-KKIHEDL----------DSGKPT-----------------LRLLYVTPELIATPGFMAKLMK-IYSRGLLSLIAIDEAHCISTWGHDFRPGYRKLSSLRS-RLPNVPILALTATAAPKVQKDVIASLGL-QNPLVLMSSFNRPNIYYEVRYKDLLDD--PLADLAKQLKASGDVCGIIYC 263
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A5B7BZP2_DAVIN (DNA helicase n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BZP2_DAVIN) HSP 1 Score: 203 bits (516), Expect = 3.770e-60 Identity = 119/276 (43.12%), Postives = 166/276 (60.14%), Query Frame = 1
Query: 46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
++ L++ LR FGH FRGNQ EA+ V SG D +MPTGGGKS+CYQ+PA++ G +VV PLIAL E+Q+ L+EKGI AE +S+ ++AR K+ +L S +LLYVTPE++ G + S L + RG+++L+A+DEAHC+STWGHDFRP+YRK+ + R R+ VP +ALTATA +V +DV++ L + + VLK+SFNRP I+ VRYKD ++ DL LK I+YC
Sbjct: 21 KEALVKLLRWHFGHSEFRGNQLEAIEAVISGRDCFCLMPTGGGKSMCYQIPALSKTGFVLVVCPLIALMENQVMALKEKGIAAEYLSSTQTAEAR-NKIHEDLESGKPS---------------------------LRLLYVTPELIATPGFM-SKLTKIHGRGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRS-RLPNVPILALTATAVPKVQKDVIESLCL-QNPLVLKSSFNRPNIYYEVRYKDLLDD--PYVDLTNLLKSCGHVCAIIYC 263
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A835QB61_VANPL (ATP-dependent DNA helicase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QB61_VANPL) HSP 1 Score: 206 bits (525), Expect = 5.760e-60 Identity = 124/269 (46.10%), Postives = 161/269 (59.85%), Query Frame = 1
Query: 67 LRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
L++ FGH FRG Q EA+ V SG D +MPTGGGKS+CYQ+PA+AT GI +VVSPLIAL E+Q+ L+ KGI AE +S S + K+ +LT S KLLYVTPE+L G A L+ L +RGM+SL+AVDEAHC+STWGHDFRP+YRK+ + R + VP IALTATA +V +DV+ L +R +L+ SFNRP I+ VR+KD + G A DL+ L+ I+YC
Sbjct: 24 LKQYFGHSGFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALATSGIVLVVSPLIALMENQVTALKAKGICAEFLSSMQMSHTK-EKIHEDLTSGKPS---------------------------IKLLYVTPELLATVGFTAKLLK-LYNRGMLSLIAVDEAHCISTWGHDFRPSYRKLSSLRV-HLPDVPIIALTATAVPKVQKDVIDSLQLRHPL-ILRASFNRPNIYYEVRFKDLL--GNAYTDLLSLLQSSGEVCSIIYC 259 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15807.3770.1 >prot_H-elongata_contig15807.3770.1 ID=prot_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp MLNRAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALback to top mRNA from alignment at H-elongata_contig15807:30..2254- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15807.3770.1 ID=mRNA_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2225bp|location=Sequence derived from alignment at H-elongata_contig15807:30..2254- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15807:30..2254- >mRNA_H-elongata_contig15807.3770.1 ID=mRNA_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig15807:30..2254- (Himanthalia elongata Himel1 dioecious)back to top |