mRNA_H-elongata_contig157980.3767.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.810e-51 Identity = 91/125 (72.80%), Postives = 101/125 (80.80%), Query Frame = 1
Query: 1 IDGMDD--DENEKLEGLQQIISDSTS--------PPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
IDGM+D DE EKLEGLQQIISDST+ +AK+PDE+SV+VGQVDY+ATPDELQSHFEACGTINRVTILCDKFSG+PKGYAYIEFADKDG+ENALALD+SPFKGR KV
Sbjct: 70 IDGMEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKSPDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKV 194
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S2AZN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN6_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.880e-34 Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 16 DDENEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E EKL+ LQ+ ++ + TAP + A D TS++VGQVDYEA PDELQ+HF +CGTINRVTILC+ F+G+P+GYAY+EFAD + ENAL L+ S FKGR+ KV
Sbjct: 30 EEEAEKLKELQESVAKEINSNTAPASAAAVGGSVED-TSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALLLNDSIFKGRELKV 138
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK) HSP 1 Score: 123 bits (309), Expect = 4.440e-34 Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query: 121 DETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
DETSV+VGQVDYEA+P+ELQ+HF++CGTINRVTILCDKF+G+PKGYAY+EF +K+ ENAL L S FKGRQ KV
Sbjct: 37 DETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKV 111
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A813N1D3_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813N1D3_ADIRI) HSP 1 Score: 120 bits (301), Expect = 1.290e-31 Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 1
Query: 16 DDENEKLEGLQQIISDSTSPPTAPPAVA---VDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E EKL+ +Q + P AP A + ++ D+ SV+VG VDY AT EL++HF CG+I+RVTILCDKFSGQPKG+AY+EFADKD + ALALD S FKGRQ KV
Sbjct: 57 EEEAEKLKQMQVEVERQIQLPGAPGATSFPTIEEKMEADQKSVYVGNVDYTATAQELENHFHGCGSIHRVTILCDKFSGQPKGFAYVEFADKDSVQTALALDESLFKGRQIKV 169
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7R9MM94_9ACAR (Hypothetical protein n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9MM94_9ACAR) HSP 1 Score: 118 bits (296), Expect = 1.940e-31 Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 16 DDENEKLEGLQQIISD-----STSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E E+L+ +Q++++D S SP + ++++ D SV+VG VDY AT D+L+ HF CG++NRVTILCDK++G PKG+AYIEFADKD E A ALD S FKGRQ +V
Sbjct: 68 EEEAERLKIMQEVMNDEDKHDSDSPNASTTGMSIEEKMEVDARSVYVGNVDYSATADDLERHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKDSVETATALDESLFKGRQIRV 182
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S2V693_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V693_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.400e-31 Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query: 121 DETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++ S++VGQVDYEATP+ELQ+HF +CGTINRVTILC+KF+ +PKGYAYIEF +K+ ENAL L+ S FKGRQ KV
Sbjct: 19 EDNSIYVGQVDYEATPEELQAHFASCGTINRVTILCNKFTSRPKGYAYIEFLEKESVENALLLNESLFKGRQLKV 93
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: R7UZT3_CAPTE (RRM domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UZT3_CAPTE) HSP 1 Score: 117 bits (293), Expect = 2.680e-31 Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 16 DDENEKLEGLQ-----QIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E EKL +Q Q+I +S+S + PA++++ D S+ +G VDY AT +EL SHF CG++NR TILCDKFSG PKG+AY+EF DKD E A ALD S FKGRQ KV
Sbjct: 2 EEEAEKLREMQSEVEKQLILNSSSMGSPTPAISLEDKLDADSRSIWIGNVDYAATAEELGSHFHGCGSVNRATILCDKFSGHPKGFAYVEFVDKDSVETAQALDDSLFKGRQIKV 116
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: UPI0006B0E7E0 (polyadenylate-binding protein 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0E7E0) HSP 1 Score: 118 bits (296), Expect = 3.230e-31 Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 16 DDENEKLEGLQQIISD--STSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E EKL+ +Q + + SPPT ++++ D SV+VG VDY AT +EL+ HF CG+INRVTILCDKFSG PKG+AY+EFADKD + A+ALD S F+GRQ KV
Sbjct: 57 EEEAEKLKQMQNEMEKQMNMSPPTGSLGLSLEEKIEVDARSVYVGNVDYGATAEELEQHFHGCGSINRVTILCDKFSGHPKGFAYVEFADKDSVQTAMALDDSLFRGRQIKV 168
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A485KGA4_9STRA (Aste57867_5040 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGA4_9STRA) HSP 1 Score: 119 bits (297), Expect = 3.450e-31 Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 25 NEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
N+ +Q I PP AP A DE S+++GQVDYE+TP+ELQ+ F++CGTINRVTILCDKF+GQPKGYAYIEFA+ D E+AL L+ + F+GRQ KV
Sbjct: 49 NQMHSHVQAQIPKEHLPPAAPTAAQ---QMVIDENSIYIGQVDYESTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFANHDAVESALLLNDTTFRGRQLKV 152
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A8C1GX60_CYPCA (Poly(A) binding protein nuclear 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1GX60_CYPCA) HSP 1 Score: 117 bits (293), Expect = 3.450e-31 Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 16 DDENEKLEGLQQIISDSTS---PPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 345
++E EKL+ LQ + + PP P ++++ D S++VG VDY AT +EL++HF CG++NRVTILCDKF+G PKG+AYIEFADK+ A+ALD S F+GRQ KV
Sbjct: 2 EEEAEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKV 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157980.3767.1 >prot_H-elongata_contig157980.3767.1 ID=prot_H-elongata_contig157980.3767.1|Name=mRNA_H-elongata_contig157980.3767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MDDDENEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEback to top mRNA from alignment at H-elongata_contig157980:547..1446+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157980.3767.1 ID=mRNA_H-elongata_contig157980.3767.1|Name=mRNA_H-elongata_contig157980.3767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=900bp|location=Sequence derived from alignment at H-elongata_contig157980:547..1446+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157980:547..1446+ >mRNA_H-elongata_contig157980.3767.1 ID=mRNA_H-elongata_contig157980.3767.1|Name=mRNA_H-elongata_contig157980.3767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig157980:547..1446+ (Himanthalia elongata Himel1 dioecious)back to top |