mRNA_H-elongata_contig157884.3760.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157884.3760.1
Unique NamemRNA_H-elongata_contig157884.3760.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A6H5L6F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.390e-18
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            VQPSH VV+VEGNYLLLKGVDPW +   LFD  WAIRCPPE CGER
Sbjct:  300 VQPSHSVVIVEGNYLLLKGVDPWDQVGGLFDVTWAIRCPPEVCGER 345
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.640e-18
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            VQPSH VV+VEGNYLLLKGVDPW++   LFD  WAIRCPPE CGER
Sbjct:  435 VQPSHSVVIVEGNYLLLKGVDPWNQVGGLFDVTWAIRCPPEVCGER 480
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A7S0EB28_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EB28_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 5.060e-9
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            ++  H+VV+VEGNY+LL  V+PWS+   LFDE W + CP     ER
Sbjct:   48 IEREHKVVLVEGNYVLLYDVEPWSKLQHLFDEKWLVTCPEHILRER 93
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A7S2UVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.210e-8
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 QVQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            +V   H++V+VEGNY+LL GV+ W E S  FDE WA++C  E   ER
Sbjct:  138 EVTRDHKIVIVEGNYVLLDGVEVWEEISSCFDETWAVKCSIETIRER 184
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A835YY10_9STRA (Phosphoribulokinase/uridine kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY10_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVD--PWSEASRLFDEVWAIRCP 123
            V P H+VV+VEGNYLLL G D  PW+E   LFD+ W + CP
Sbjct:  103 VGPEHQVVIVEGNYLLLSGDDASPWNEIRPLFDQAWFLDCP 143
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A7S0UY95_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0UY95_9CRYP)

HSP 1 Score: 50.4 bits (119), Expect = 7.770e-6
Identity = 24/52 (46.15%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:    4 QVQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGERWDTSN 159
            +V  S ++V+VEGNYLLL G  PW E   LFDE W + C      +R  T N
Sbjct:  132 EVCESDQIVIVEGNYLLLYGESPWGELEGLFDERWFVSCEEGVLRDRVVTRN 183
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: A0A4Q0A0A5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A0A5_9FUNG)

HSP 1 Score: 47.8 bits (112), Expect = 2.700e-5
Identity = 20/46 (43.48%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            ++ +H +V+VEG YL L+GVD W     L DE W ++C P  C  R
Sbjct:   37 IKSTHRLVIVEGIYLQLQGVDAWENLPVLMDENWWLQCDPTECRRR 82
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BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Match: UPI000468FA32 (nucleoside/nucleotide kinase family protein n=1 Tax=Leifsonia aquatica TaxID=144185 RepID=UPI000468FA32)

HSP 1 Score: 47.4 bits (111), Expect = 9.380e-5
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    7 VQPSHEVVMVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGER 144
            V P+H++++VEGNYLL+   D W   SR  DE W +R PP    +R
Sbjct:  117 VTPNHDIIIVEGNYLLVDH-DGWRGVSRWLDEAWFLRIPPALRHDR 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157884.3760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L6F9_9PHAE8.390e-1878.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSL3_ECTSI8.640e-1878.26Phosphoribulokinase/uridine kinase family protein ... [more]
A0A7S0EB28_9CRYP5.060e-950.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2UVB4_9STRA3.210e-851.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YY10_9STRA3.110e-758.54Phosphoribulokinase/uridine kinase (Fragment) n=1 ... [more]
A0A7S0UY95_9CRYP7.770e-646.15Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A4Q0A0A5_9FUNG2.700e-543.48Uncharacterized protein (Fragment) n=1 Tax=Dimarga... [more]
UPI000468FA329.380e-545.65nucleoside/nucleotide kinase family protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157884contigH-elongata_contig157884:39..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue8.4e-11
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.8170683-UTR-H-elongata_contig157884:38..681622929930.8170683-UTR-H-elongata_contig157884:38..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157884 39..68 +
1691679212.3837638-UTR-H-elongata_contig157884:38..681691679212.3837638-UTR-H-elongata_contig157884:38..68Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157884 39..68 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.834049-CDS-H-elongata_contig157884:68..2121622929930.834049-CDS-H-elongata_contig157884:68..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157884 69..212 +
1691679212.3972254-CDS-H-elongata_contig157884:68..2121691679212.3972254-CDS-H-elongata_contig157884:68..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157884 69..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157884.3760.1prot_H-elongata_contig157884.3760.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157884 69..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157884.3760.1

>prot_H-elongata_contig157884.3760.1 ID=prot_H-elongata_contig157884.3760.1|Name=mRNA_H-elongata_contig157884.3760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MVEGNYLLLKGVDPWSEASRLFDEVWAIRCPPEFCGERWDTSNVPNP*
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mRNA from alignment at H-elongata_contig157884:39..212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157884.3760.1 ID=mRNA_H-elongata_contig157884.3760.1|Name=mRNA_H-elongata_contig157884.3760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig157884:39..212+ (Himanthalia elongata Himel1 dioecious)
ACGCAGGTGCAACCTTCCCATGAAGTGGTGATGGTTGAGGGAAACTATCT
TCTGCTGAAGGGAGTCGATCCCTGGAGCGAGGCGAGCAGACTGTTCGATG
AGGTCTGGGCCATTCGATGCCCACCCGAGTTTTGCGGAGAGAGGTGGGAT
ACGTCGAACGTCCCGAACCCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig157884:39..212+

>mRNA_H-elongata_contig157884.3760.1 ID=mRNA_H-elongata_contig157884.3760.1|Name=mRNA_H-elongata_contig157884.3760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig157884:39..212+ (Himanthalia elongata Himel1 dioecious)
ATGGTTGAGGGAAACTATCTTCTGCTGAAGGGAGTCGATCCCTGGAGCGA
GGCGAGCAGACTGTTCGATGAGGTCTGGGCCATTCGATGCCCACCCGAGT
TTTGCGGAGAGAGGTGGGATACGTCGAACGTCCCGAACCCCTAGATGGTT
GAGGGAAACTATCTTCTGCTGAAGGGAGTCGATCCCTGGAGCGAGGCGAG
CAGACTGTTCGATGAGGTCTGGGCCATTCGATGCCCACCCGAGTTTTGCG
GAGAGAGGTGGGATACGTCGAACGTCCCGAACCCCTAG
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