mRNA_H-elongata_contig157855.3758.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157855.3758.1
Unique NamemRNA_H-elongata_contig157855.3758.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Match: D7FK64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK64_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.130e-30
Identity = 103/212 (48.58%), Postives = 120/212 (56.60%), Query Frame = 1 
Query:    1 GDNLRFREHRKLISGRLSGRKRAEQLD--ASAGDDGGKIL--SSLAAYGSAAAGAVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDEAFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKPQPAVGVSAGGKAAGTXXXXXXXXXGK-------EETEAMKVYLTKKERKRIRRTTRMERER 603
            GDNLRFREHRK +SGR+SGR  AEQLD  A  G  GG     SSL+ Y      + + +                     +AVP +R  G + +E   +EWWDEAFLTKE RD KA GKL  E    + LY +L L+N+K FKY+QHPKKP               XXXXXXXXX          +  AMKVYLTKKERKRIRRTTRMERER
Sbjct:  229 GDNLRFREHRKFLSGRMSGRVNAEQLDTPAGGGSGGGPTAGTSSLSVY------SAQAEAXXXXXXXXXXXXXXXXXXXAEAVPALREVGQDLEE---IEWWDEAFLTKETRDAKAAGKLEAEACTTDALYPVLLLENAKTFKYIQHPKKPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSDAAAMKVYLTKKERKRIRRTTRMERER 431
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BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Match: A0A6H5KAN0_9PHAE (PRP3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.510e-24
Identity = 73/151 (48.34%), Postives = 86/151 (56.95%), Query Frame = 1 
Query:    1 GDNLRFREHRKLISGRLSGRKRAEQLDASAGDDGGKILS----SLAAYGSAAAGAVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDEAFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKP 441
            GDNLRFREHRK +SGR+SGR  AEQLD   G            SL+ Y + A    E D  A+             E AE AVP +R  G +    VE+EWWDE+FLTKE RD KA GKL  E    + LY  L L+N+K FKY+QHPKKP
Sbjct:  299 GDNLRFREHRKFLSGRMSGRVNAEQLDPPGGXXXXXXXXXXXXSLSVYSAQA----EADESAAXXXXXXXXXXXXKEAAE-AVPALREAGQD---LVEIEWWDESFLTKETRDAKAAGKLEAEACTTDALYPGLLLENAKTFKYIQHPKKP 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK64_ECTSI1.130e-3048.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAN0_9PHAE3.510e-2448.34PRP3 domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157855contigH-elongata_contig157855:415..1422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7FK64
Preferred namePPP1R42
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010921,GO:0015030,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035303,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044030,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051174,GO:0051252,GO:0051336,GO:0060255,GO:0060968,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902275,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG2769@1,KOG2769@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-mRNA-splicing factor 3
Ec32 orthologEc-04_005660.1
Exons2
Model size603
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.5687382-CDS-H-elongata_contig157855:414..6841622929930.5687382-CDS-H-elongata_contig157855:414..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157855 415..684 -
1691679212.2950974-CDS-H-elongata_contig157855:414..6841691679212.2950974-CDS-H-elongata_contig157855:414..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157855 415..684 -
1622929930.5845184-CDS-H-elongata_contig157855:1089..14221622929930.5845184-CDS-H-elongata_contig157855:1089..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157855 1090..1422 -
1691679212.3069508-CDS-H-elongata_contig157855:1089..14221691679212.3069508-CDS-H-elongata_contig157855:1089..1422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157855 1090..1422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157855.3758.1prot_H-elongata_contig157855.3758.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157855 415..1422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157855.3758.1

>prot_H-elongata_contig157855.3758.1 ID=prot_H-elongata_contig157855.3758.1|Name=mRNA_H-elongata_contig157855.3758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
GDNLRFREHRKLISGRLSGRKRAEQLDASAGDDGGKILSSLAAYGSAAAG
AVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDE
AFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKPQPA
VGVSAGGKAAGTGKGGGEGGGGKEETEAMKVYLTKKERKRIRRTTRMERE
R
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mRNA from alignment at H-elongata_contig157855:415..1422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157855.3758.1 ID=mRNA_H-elongata_contig157855.3758.1|Name=mRNA_H-elongata_contig157855.3758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig157855:415..1422- (Himanthalia elongata Himel1 dioecious)
GGAGATAACCTGCGCTTCCGCGAGCACCGCAAGCTAATCTCAGGGAGACT
TTCAGGGAGGAAGCGTGCGGAGCAGCTCGACGCATCGGCGGGTGACGATG
GCGGGAAGATTTTGTCGTCCTTAGCAGCGTACGGATCTGCTGCGGCGGGG
GCTGTTGAGGAGGATGGTGGCGCGTCACCGGCGGCGGTGGTGGCAGTGGC
AGAAGCACAAGGAATGGAGAAAGCGGAGGACGCGGTGCCGCCTATGCGCG
GGACCGGAGATGAGAAGGACGAAGCGGTCGAGATGGAGTGGTGGGATGAG
GCGTTCTTGACCAAGGAAATGAGGGATGATAAGGTACAGTTTCCGGGGTT
TTTTGCGTCGTCGTATCCGTCGTCGGTATCGCCGATCCTTTCAACCCCCG
TCCGGCTCCCTTGCACTTGCTTCTATTCATAGTACAACTGGTTTTGCTTT
TACATGGTCAGTGGATCGGCCGACCCAAACACACACGCACACAAGCAACA
TTGGACACGTAGACGCGCGCTTGAGGACACGAACGCGGGCGGGAAAACCA
AACAAAGACAACCAAGCAGAACTTTTTCCTTCAATGAAGACGATTTTAGT
CTTCGTGTGCGCACGCTCAAAAACAGATGTAGTTACCGCAAACGCCCCCC
TCCCGCCCCCGCCATGACAAGCGGAAGCCCGTCCCGTCTCGTTCCAGTTC
CCCACGGATCGCGTTCCGTGCGGCGCGCCACTACGCAGGCGGTCGGAAAG
CTGATGCCCGAGACCAACAACGCCGAGGTGCTCTACGAACTCCTCGGCCT
TAAGAACTCCAAGTTCTTCAAGTACGTCCAACATCCCAAGAAGCCGCAAC
CTGCGGTGGGGGTATCGGCAGGCGGGAAGGCAGCGGGGACAGGAAAGGGC
GGCGGAGAAGGTGGAGGTGGAAAAGAAGAGACGGAGGCGATGAAGGTTTA
CTTGACCAAGAAGGAGCGAAAGAGGATACGCCGCACCACGCGAATGGAGA
GAGAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig157855:415..1422-

>mRNA_H-elongata_contig157855.3758.1 ID=mRNA_H-elongata_contig157855.3758.1|Name=mRNA_H-elongata_contig157855.3758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig157855:415..1422- (Himanthalia elongata Himel1 dioecious)
GGAGATAACCTGCGCTTCCGCGAGCACCGCAAGCTAATCTCAGGGAGACT
TTCAGGGAGGAAGCGTGCGGAGCAGCTCGACGCATCGGCGGGTGACGATG
GCGGGAAGATTTTGTCGTCCTTAGCAGCGTACGGATCTGCTGCGGCGGGG
GCTGTTGAGGAGGATGGTGGCGCGTCACCGGCGGCGGTGGTGGCAGTGGC
AGAAGCACAAGGAATGGAGAAAGCGGAGGACGCGGTGCCGCCTATGCGCG
GGACCGGAGATGAGAAGGACGAAGCGGTCGAGATGGAGTGGTGGGATGAG
GCGTTCTTGACCAAGGAAATGAGGGATGATAAGGGAGATAACCTGCGCTT
CCGCGAGCACCGCAAGCTAATCTCAGGGAGACTTTCAGGGAGGAAGCGTG
CGGAGCAGCTCGACGCATCGGCGGGTGACGATGGCGGGAAGATTTTGTCG
TCCTTAGCAGCGTACGGATCTGCTGCGGCGGGGGCTGTTGAGGAGGATGG
TGGCGCGTCACCGGCGGCGGTGGTGGCAGTGGCAGAAGCACAAGGAATGG
AGAAAGCGGAGGACGCGGTGCCGCCTATGCGCGGGACCGGAGATGAGAAG
GACGAAGCGGTCGAGATGGAGTGGTGGGATGAGGCGTTCTTGACCAAGGA
AATGAGGGATGATAAGGCGGTCGGAAAGCTGATGCCCGAGACCAACAACG
CCGAGGTGCTCTACGAACTCCTCGGCCTTAAGAACTCCAAGTTCTTCAAG
TACGTCCAACATCCCAAGAAGCCGCAACCTGCGGTGGGGGTATCGGCAGG
CGGGAAGGCAGCGGGGACAGGAAAGGGCGGCGGAGAAGGTGGAGGTGGAA
AAGAAGAGACGGAGGCGATGAAGGTTTACTTGACCAAGAAGGAGCGAAAG
AGGATACGCCGCACCACGCGAATGGAGAGAGAGAGGGCGGTCGGAAAGCT
GATGCCCGAGACCAACAACGCCGAGGTGCTCTACGAACTCCTCGGCCTTA
AGAACTCCAAGTTCTTCAAGTACGTCCAACATCCCAAGAAGCCGCAACCT
GCGGTGGGGGTATCGGCAGGCGGGAAGGCAGCGGGGACAGGAAAGGGCGG
CGGAGAAGGTGGAGGTGGAAAAGAAGAGACGGAGGCGATGAAGGTTTACT
TGACCAAGAAGGAGCGAAAGAGGATACGCCGCACCACGCGAATGGAGAGA
GAGAGG
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