mRNA_H-elongata_contig157785.3752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157785.3752.1
Unique NamemRNA_H-elongata_contig157785.3752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: D7FSI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI0_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.730e-14
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEA 135
            V VIGAGAAGLAA R LRDEG  VT+ EKSH VGGVWRY P PEA
Sbjct:   22 VCVIGAGAAGLAASRCLRDEGCRVTVLEKSHDVGGVWRYKPEPEA 66
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A6H5JZC1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZC1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-13
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEA 135
            V VIGAGAAGLAAGR LRDEG  VTI EKSH VGGVWRY P PEA
Sbjct:   22 VCVIGAGAAGLAAGRCLRDEGCRVTILEKSHDVGGVWRYKPEPEA 66
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A151SYA4_CAJCA (Flavin-containing monooxygenase n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SYA4_CAJCA)

HSP 1 Score: 63.5 bits (153), Expect = 1.470e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE 138
            VAVIGAG AGLAA R LR EGL V +FEKS H+GG+WRYDP  +++
Sbjct:    7 VAVIGAGVAGLAAARELRGEGLNVVVFEKSDHLGGMWRYDPRTDSD 52
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: UPI00098DA679 (flavin-containing monooxygenase FMO GS-OX5 isoform X1 n=2 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DA679)

HSP 1 Score: 63.5 bits (153), Expect = 1.490e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE 138
            VAVIGAG AGLAA R LR EGL V +FEKS H+GG+WRYDP  +++
Sbjct:    7 VAVIGAGVAGLAAARELRGEGLNVVVFEKSDHLGGMWRYDPRTDSD 52
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A8J4C2S6_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C2S6_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.300e-9
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE 138
            VA+IGAGAAGLAA R LR EG  VT+ E+S +VGGVWRYDP  E+E
Sbjct:   51 VAIIGAGAAGLAAARELRLEGHDVTVLEQSPYVGGVWRYDPRTESE 96
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: D8U4T5_VOLCA (Flavin-containing monooxygenase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4T5_VOLCA)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-9
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    4 AVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPE 132
            AVIGAGAAGLAA R LRDEG  VT+ E+S +VGGVWRYDP  E
Sbjct:  355 AVIGAGAAGLAAARELRDEGHDVTVLEQSPYVGGVWRYDPRTE 397
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A1S3TXJ5_VIGRR (Flavin-containing monooxygenase n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TXJ5_VIGRR)

HSP 1 Score: 60.5 bits (145), Expect = 1.800e-9
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYD 120
            VAVIGAG AGLA  R LR EGL V +FEKSHH+GG WRYD
Sbjct:    7 VAVIGAGVAGLAVARELRREGLDVVVFEKSHHLGGTWRYD 46
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A1S3TXI3_VIGRR (Flavin-containing monooxygenase n=8 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TXI3_VIGRR)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYD 120
            VAVIGAG AGLA  R LR EGL V +FEKSHH+GG WRYD
Sbjct:    7 VAVIGAGVAGLAVARELRREGLDVVVFEKSHHLGGTWRYD 46
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A8J4C7Y8_9CHLO (Flavin-containing monooxygenase n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C7Y8_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE 138
            VA+IGAGAAGLAA R LR EG  VT+ E+S +VGGVWRYDP  E+E
Sbjct:   51 VAIIGAGAAGLAAARELRLEGHDVTVLEQSPYVGGVWRYDPRTESE 96
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BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Match: A0A6I9TU06_SESIN (Flavin-containing monooxygenase n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TU06_SESIN)

HSP 1 Score: 56.6 bits (135), Expect = 4.160e-8
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE 138
            VAVIGAG AGL A R L++EGL V+++EKS  +GG W YDP  E++
Sbjct:    7 VAVIGAGVAGLTAARALKEEGLQVSVYEKSDRLGGTWVYDPRVESD 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157785.3752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI0_ECTSI1.730e-1477.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC1_9PHAE1.550e-1382.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A151SYA4_CAJCA1.470e-1067.39Flavin-containing monooxygenase n=1 Tax=Cajanus ca... [more]
UPI00098DA6791.490e-1067.39flavin-containing monooxygenase FMO GS-OX5 isoform... [more]
A0A8J4C2S6_9CHLO1.300e-969.57Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
D8U4T5_VOLCA1.330e-974.42Flavin-containing monooxygenase n=1 Tax=Volvox car... [more]
A0A1S3TXJ5_VIGRR1.800e-975.00Flavin-containing monooxygenase n=1 Tax=Vigna radi... [more]
A0A1S3TXI3_VIGRR1.820e-975.00Flavin-containing monooxygenase n=8 Tax=Phaseoleae... [more]
A0A8J4C7Y8_9CHLO1.820e-969.57Flavin-containing monooxygenase n=2 Tax=Volvox ret... [more]
A0A6I9TU06_SESIN4.160e-858.70Flavin-containing monooxygenase n=1 Tax=Sesamum in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157785contigH-elongata_contig157785:1240..1377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FSI0
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
Ec32 ortholog descriptionsimilar to flavin-containing monooxygenase family protein
Ec32 orthologEc-11_003800.2
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.1766021-CDS-H-elongata_contig157785:1239..13771622929930.1766021-CDS-H-elongata_contig157785:1239..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157785 1240..1377 +
1691679212.1846976-CDS-H-elongata_contig157785:1239..13771691679212.1846976-CDS-H-elongata_contig157785:1239..1377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157785 1240..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157785.3752.1prot_H-elongata_contig157785.3752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157785 1240..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157785.3752.1

>prot_H-elongata_contig157785.3752.1 ID=prot_H-elongata_contig157785.3752.1|Name=mRNA_H-elongata_contig157785.3752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
VAVIGAGAAGLAAGRILRDEGLLVTIFEKSHHVGGVWRYDPTPEAE
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mRNA from alignment at H-elongata_contig157785:1240..1377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157785.3752.1 ID=mRNA_H-elongata_contig157785.3752.1|Name=mRNA_H-elongata_contig157785.3752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig157785:1240..1377+ (Himanthalia elongata Himel1 dioecious)
GTTGCTGTGATAGGAGCGGGTGCGGCGGGCTTAGCTGCAGGTCGAATACT
TCGGGATGAGGGGCTGCTAGTGACGATCTTCGAAAAGTCGCATCATGTCG
GCGGGGTTTGGCGATATGATCCAACTCCGGAGGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig157785:1240..1377+

>mRNA_H-elongata_contig157785.3752.1 ID=mRNA_H-elongata_contig157785.3752.1|Name=mRNA_H-elongata_contig157785.3752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig157785:1240..1377+ (Himanthalia elongata Himel1 dioecious)
GTTGCTGTGATAGGAGCGGGTGCGGCGGGCTTAGCTGCAGGTCGAATACT
TCGGGATGAGGGGCTGCTAGTGACGATCTTCGAAAAGTCGCATCATGTCG
GCGGGGTTTGGCGATATGATCCAACTCCGGAGGCGGAGGTTGCTGTGATA
GGAGCGGGTGCGGCGGGCTTAGCTGCAGGTCGAATACTTCGGGATGAGGG
GCTGCTAGTGACGATCTTCGAAAAGTCGCATCATGTCGGCGGGGTTTGGC
GATATGATCCAACTCCGGAGGCGGAG
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