mRNA_H-elongata_contig15769.3748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15769.3748.1
Unique NamemRNA_H-elongata_contig15769.3748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: D7G8K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K6_ECTSI)

HSP 1 Score: 623 bits (1607), Expect = 2.800e-212
Identity = 339/444 (76.35%), Postives = 366/444 (82.43%), Query Frame = 2
Query: 1172 GHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVD----SAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVG---GGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGDLRGSSACRVVTSDG----AMGD----AESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPDVGDLVVVSTADEGGVHRLTVRAAVLQESVEYDHKDAEMAARVSALTGYGAGRSLLPRRR 2458
            GHVSVLDLWHRGRTVRYPVAA+RAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVA DLCMWRWLSPWGLALVTD AVFYWSV D   GG SP+R     S+GGG   DRD       +A+E+++  R RRPR+AFARRRTLT+P TLHRVYDYQ SADGRWG+LL   V+ +WGGG     G  GNGYGSHSSGIEGGGGPVKVDLHSFE  TTFEFEVLG +L+TMPGS+PPLNLLGLVVRGE GATELRVLDLDRSLA+AEG E LERLA  GEGWLIATTHVIADGDLRGS + RVV  DG     +G+     E+PP   LVSPPVFLRQWTENTNV+F+VGCHGLLL+LDVVTGAELARA AC  P++EAEVDPDVGDLVVVSTAD GGVHRL VRAA L+ESVEY HKD EMA RVSALTGY   R L P RR
Sbjct:  206 GHVSVLDLWHRGRTVRYPVAADRAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVATDLCMWRWLSPWGLALVTDGAVFYWSVLDGSMGGNSPERGG---STGGGGGLDRDLSGGGDAAANERESTARSRRPRQAFARRRTLTRPDTLHRVYDYQPSADGRWGLLLGPFVDSNWGGGXXXXXGALGNGYGSHSSGIEGGGGPVKVDLHSFERGTTFEFEVLGASLITMPGSSPPLNLLGLVVRGEGGATELRVLDLDRSLAQAEGAEDLERLAELGEGWLIATTHVIADGDLRGSCSYRVVGVDGRERGGLGEDAATGEAPP---LVSPPVFLRQWTENTNVVFVVGCHGLLLVLDVVTGAELARAQACRAPLIEAEVDPDVGDLVVVSTADGGGVHRLGVRAAALRESVEYYHKDPEMATRVSALTGYAGVRPLPPPRR 643          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A6H5KWH5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH5_9PHAE)

HSP 1 Score: 640 bits (1651), Expect = 8.310e-209
Identity = 358/515 (69.51%), Postives = 388/515 (75.34%), Query Frame = 2
Query:  974 LPRVLEAAKGGGVLSSNPRLLCVC---------CVNGGVETPVRGTSPGAGVTIGAGDSTLPPVDDVANVVVREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVG---GGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGDLRGSSACRVVTSDG----AMGDA----ESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPDVGDLVVVSTADEGGVHRLTVRAAVLQESVEYDHKDAEMAARVSALTGYGAGRSLLPRRR 2458
            LP VL AAK GGVLSSNPRLLCVC                      +P AG    A                   GHVSVLDLWHRGRTVRYPVAA+RAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVA DLCMWRWLSPW LALVTD AVFYWSV D   GG SP+R+                  +A+E+++A R RRPR+AFARRRTLT+P TLHRVYDYQASADGRWG+LLCAVV+ DWGG      G  GNGYGSHSSGIEGGGGPVKVDLHSFE  TTFEFEVLG +L+TMPGS+PPLNLLGLVVRGE GATELRVLDLDRSLA+AEG E  ERL+  GEGWLIATTHVIADGDLRGS + RVV +DG     +G+     E+PP   LVSPPVFLRQW+ENTNV+FLVGCHGLLL+LDVVTGAELARA AC  P++EAEVDPDVGDLVVVSTAD GGVHR+ VRAA L+ESVEY HKD EMA RVSALTGY   R L P RR
Sbjct:  947 LPGVLRAAKSGGVLSSNPRLLCVCNXXXXXXXXXXXXXXXXXXXXXAPAAGQQDSA-------------------GHVSVLDLWHRGRTVRYPVAADRAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVATDLCMWRWLSPWSLALVTDGAVFYWSVLDGSMGGNSPERDXXXXXXXXXXXXXGAGDAAANERESAARSRRPRQAFARRRTLTRPDTLHRVYDYQASADGRWGLLLCAVVDSDWGGXXXXXXGALGNGYGSHSSGIEGGGGPVKVDLHSFERGTTFEFEVLGASLMTMPGSSPPLNLLGLVVRGEGGATELRVLDLDRSLAQAEGAEDFERLSELGEGWLIATTHVIADGDLRGSCSYRVVGADGRERGGLGEGAATGEAPP---LVSPPVFLRQWSENTNVVFLVGCHGLLLVLDVVTGAELARAQACRAPLIEAEVDPDVGDLVVVSTADGGGVHRMGVRAAALRESVEYYHKDPEMATRVSALTGYAGVRPLPPPRR 1439          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A835YLB9_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.690e-20
Identity = 143/533 (26.83%), Postives = 203/533 (38.09%), Query Frame = 2
Query:  920 SAGARARPYRAHGRXXXXLPRVLEAAKGGGVLSSNPRLLCVCCVNGGVETPVRGTSPGAGVTIGAGDSTLPPVDDVANVVVREPGHVSVLDLWHRGRTVRYPVAAE--RAAMSPNQSESVIAVLGGGSLHV-------------FSIPRRCRLQEQAV------------------------------------AADLCMWRWLSPWGLALVTDTAVFYW-SVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELR-----VLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGD-----------------LRGSSACRVVTSDG-----AMGDAESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPD 2281
            S GA A   +AH R             GG +L+SNPRLLC+CC     E P  G     GV I                          LDLW +GRTV +P + +   AA+SP + E+ + V  G +L V              S+PR+C + E A+                                          WRWL P  L L+ +  V+YW +++   A   +P R   R++    S+    +V S   + + G    P         L +   L RV  Y  SADG+W +L  + ++ D                      G G V +D+  F  + TF    LG ALL MPGS+PP+NLL LVV+ E G  ELR       +++ S +  +   +  R   H         H+ +  D                 +R   + R+    G     A   A+    +S   PP  L  W  N +VL +V   G+L L DV T A L        PV+EAEVD +
Sbjct:  819 SPGASAATVKAHRR-------------GGLLLASNPRLLCLCCR----EDPSGGNGGAPGVAI--------------------------LDLWQQGRTVFFPTSTKPLAAAISPFRGETYVCVQTGTALQVNAATAAISALKEVHSLPRQCVIAELALDDAALRDGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRWRWLGPGVLVLIAEQGVYYWPALAKGAAAAAAPQRGFSRTTEVRPSAA---AVTSRSHRLSHGSPLLP--------LLLQSLGLARVAGYDCSADGKWAVL--SALHAD----------------------GSGAVALDVRCFPARATFAMPALGAALLVMPGSSPPVNLLALVVQNEMGQPELRGEPKRCSNVNFSCSNFKYGASQSR--QHQSVTPRVQLHMRSSSDSDXXXXXXXXXXXXXXIMRILGSRRLYRRHGHDRRHAQLAAKWKHCSSTRCPPAALAHWPRNPHVLCVVARDGVLRLFDVHTCARLHCCRVASGPVLEAEVDAE 1271          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A6H5K7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-10
Identity = 47/169 (27.81%), Postives = 72/169 (42.60%), Query Frame = 2
Query: 1178 VSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAV-AADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGT--LHRVYDYQASADGRWGMLLCA 1675
            V+++DLW+ G T RYP+    A +SP   E +IA+L    + VFS+  R R +   + ++ + +W+W+    + +VT   V  W V  +                                         P+K F R R  +   T    R YDYQ +ADGRWG+L  A
Sbjct: 1303 VAIVDLWNGGGTTRYPIGCVSAILSPRTDEQIIALLSERGMQVFSVTHRVRRRHVVIKSSSVRLWKWIDDDVIVIVTKEEVLRWDVRGTSM---------------------------------------PKKLFTRNRPYSPSPTDGASRAYDYQCTADGRWGLLFVA 1432          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A164VVK7_9AGAM (Clathrin heavy chain n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164VVK7_9AGAM)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-9
Identity = 68/266 (25.56%), Postives = 111/266 (41.73%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFE--MKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARA 1951
            V E   V ++DL      +R P+ A+ A M P Q   ++A+  G  L VF+I  + +++      D+  W+W+S   + LVTDTAVF+WS+ D+     SP                                  P K F R   L      H++ +Y+ +AD +W +L+          G+ G +GN     +  I G      + L+S E  +    E      A L + G+  P +L    VR   GA +L ++++D +   A
Sbjct:   43 VNEQNQVVIIDLADANNVLRRPITADSAIMHPKQK--ILALKAGRQLQVFNIETKQKVKSHMTTEDVVFWKWISDSTIGLVTDTAVFHWSIDDA----SSP----------------------------------PAKIFDRHANLAG----HQIINYRVTADEKWVVLI----------GISGNTGN---PSAFKIRG-----SMQLYSRERGVSQPIEGHAAAFAELRLDGNAKPTSLFTFAVRTATGA-KLHIVEIDHAAPNA 245          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A812CWS6_SEPPH (Clathrin heavy chain n=3 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CWS6_SEPPH)

HSP 1 Score: 72.4 bits (176), Expect = 3.310e-9
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVS--DSHAGGQSPDR 1468
            V E   V ++DL      +R P++A+ A M+P  +  VIA+  G +L +F+I  + +++  A+  D+  W+W+S   +ALVTDTAV++WS+   D H G   P +
Sbjct:   44 VGETAQVVIIDLNDATNPIRRPISADSAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHAMTEDVTFWKWISVNTVALVTDTAVYHWSMEGPDDHTGDSQPQK 146          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A165U8B5_9AGAM (Clathrin heavy chain n=3 Tax=Gloeophyllales TaxID=452339 RepID=A0A165U8B5_9AGAM)

HSP 1 Score: 71.6 bits (174), Expect = 5.990e-9
Identity = 65/260 (25.00%), Postives = 109/260 (41.92%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMP--GSNPPLNLLGLVVRGEAGATELRVLDLD 1933
            V E   V ++DL      +R P+ A+ A M P Q   ++A+  G +L VF+I  + +++      D+  W+W+S   L L+TDTAV++WS+SD                                          P+K F R  TL       ++ +Y+AS+D +W ++L  +            SGN     +  ++G     ++ L+S E   +   E    A   M   G + P+ L    VR   GA +L V+++D
Sbjct:   44 VNEQNQVVIIDLVDANNVLRRPITADSAIMHPQQK--ILALKAGRTLQVFNIETKQKVKSYVNNEDIVFWKWISETTLGLITDTAVYHWSISDQA---------------------------------------NPQKIFDRHPTLAGA----QIINYRASSDEKW-LVLVGI------------SGNSTNPSAFKVQG-----RMQLYSRERGVSQPIEGHAAAFAEMKIEGHSKPVKLFTFSVRTATGA-KLHVVEID 239          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A2D4GPK7_MICCO (Uncharacterized protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4GPK7_MICCO)

HSP 1 Score: 65.5 bits (158), Expect = 6.410e-9
Identity = 31/91 (34.07%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
            V E   V ++DL      +R P++AE A M+P  +  VIA+  G +L +F+I  + +++   +A ++  W+W+S   +ALVT+TAV++W++
Sbjct:   23 VGEQAQVVIVDLSDPTTPIRRPISAESAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWISVNTVALVTETAVYHWTM 111          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A212D730_CEREH (CLTC (Fragment) n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212D730_CEREH)

HSP 1 Score: 65.1 bits (157), Expect = 7.920e-9
Identity = 30/91 (32.97%), Postives = 55/91 (60.44%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
            V E   V ++D+      +R P++A+ A M+P  +  VIA+  G +L +F+I  + +++   +  D+  W+W+S   +ALVTD AV++WS+
Sbjct:   30 VGEQAQVVIIDMNDPSNPIRRPISADSAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLKTVALVTDNAVYHWSM 118          
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A183ILW3_9BILA (Uncharacterized protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183ILW3_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 8.130e-9
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
            V E   V V+D+      +R P++A+ A M+P  +  VIA+  G +L +F+I  + +++  ++  D+  W+W++   +ALVT+TAV++WS+
Sbjct:   13 VGESAQVVVIDMADHTNPLRRPISADSAIMNP--ASKVIALKAGRTLQIFNIEMKSKMKSHSMTEDVVFWKWINVNTVALVTETAVYHWSM 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K6_ECTSI2.800e-21276.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWH5_9PHAE8.310e-20969.51Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YLB9_9STRA1.690e-2026.83Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A6H5K7T4_9PHAE2.280e-1027.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A164VVK7_9AGAM1.540e-925.56Clathrin heavy chain n=2 Tax=Sistotremastrum TaxID... [more]
A0A812CWS6_SEPPH3.310e-935.24Clathrin heavy chain n=3 Tax=Sepia pharaonis TaxID... [more]
A0A165U8B5_9AGAM5.990e-925.00Clathrin heavy chain n=3 Tax=Gloeophyllales TaxID=... [more]
A0A2D4GPK7_MICCO6.410e-934.07Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
A0A212D730_CEREH7.920e-932.97CLTC (Fragment) n=1 Tax=Cervus elaphus hippelaphus... [more]
A0A183ILW3_9BILA8.130e-932.97Uncharacterized protein n=1 Tax=Soboliphyme baturi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15769contigH-elongata_contig15769:3785..7226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score576.2
Seed ortholog evalue1.2e-161
Seed eggNOG ortholog2880.D7G8K6
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClathrin, heavy chain, linker/propeller domain
Ec32 orthologEc-14_003350.1
Exons3
Model size2464
Cds size1218
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15769.3748.1prot_H-elongata_contig15769.3748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15769 5620..7226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.9250216-UTR-H-elongata_contig15769:3784..39271622929929.9250216-UTR-H-elongata_contig15769:3784..3927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15769 3785..3927 +
1691679212.0782042-UTR-H-elongata_contig15769:3784..39271691679212.0782042-UTR-H-elongata_contig15769:3784..3927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15769 3785..3927 +
1622929929.9470384-UTR-H-elongata_contig15769:4516..56191622929929.9470384-UTR-H-elongata_contig15769:4516..5619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15769 4517..5619 +
1691679212.091046-UTR-H-elongata_contig15769:4516..56191691679212.091046-UTR-H-elongata_contig15769:4516..5619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15769 4517..5619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.9611425-CDS-H-elongata_contig15769:5619..57441622929929.9611425-CDS-H-elongata_contig15769:5619..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15769 5620..5744 +
1691679212.099228-CDS-H-elongata_contig15769:5619..57441691679212.099228-CDS-H-elongata_contig15769:5619..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15769 5620..5744 +
1622929929.9755902-CDS-H-elongata_contig15769:6133..72261622929929.9755902-CDS-H-elongata_contig15769:6133..7226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15769 6134..7226 +
1691679212.1071596-CDS-H-elongata_contig15769:6133..72261691679212.1071596-CDS-H-elongata_contig15769:6133..7226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15769 6134..7226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15769.3748.1

>prot_H-elongata_contig15769.3748.1 ID=prot_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=406bp
MSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLA
LVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDA
AGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWG
GGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTM
PGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARAEGPEALERLAMHGEG
WLIATTHVIADGDLRGSSACRVVTSDGAMGDAESPPPTSLVSPPVFLRQW
TENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPDVGDLV
VVSTADEGGVHRLTVRAAVLQESVEYDHKDAEMAARVSALTGYGAGRSLL
PRRRG*
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mRNA from alignment at H-elongata_contig15769:3785..7226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15769.3748.1 ID=mRNA_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-elongata_contig15769:3785..7226+ (Himanthalia elongata Himel1 dioecious)
GTTCACTGCCCGGAAAAGCAGCCGCCGGGACTCGTGGACCGCGTGCGTAA GGCCGTCGAGGATCGCACGCTCAAGGCGGTGGTGGACCGCTCTGCCGTGT GGAACAAGACGGCGGCCAAGGCGTACGCTCGCCTGGCGATCGGGTGGGTT GAGGGGTGGTTGGCGCCGTGGTTGGCTAGGTGTAGCACCTGATGTGAGTT TCTTGCTTTTTCGTCGTCGTCGTCGTCGTTGTTTTTTTTGGGGTTTTTTT GTCGAGGTGTGATCGGTCAGTTGTCGAAAGAGGAAAGGGAAAGTATTTTC GTGTGTCCAACGAGTAAGGGGAGGGGAGGGCACGCTGGGCTCTATATACA CCGAGTGCAGTGTAATTTGTTTTGTAGAGGGCACCAAAAGGTCAGGACGC GACCCATCTTCCTTCCGCCCGTCTTGGTCGACTTCAAAAGGCAAAACGAT ATCGTGCGAGTACGAGAGATGTGAGCGACACGCCAGCGCTGATCTCGCCC TGACGTATTTAGCTTTTCTCGGTCTGCGGGGGCGCATCTGTACCAAAGGA TTTGTCCTGTCGCTCGAGCCTATATGCTCTGTAGAGCATGTGCTGTGGGG TAACTTGAGAGACGGTGCCTCCTTTAGAAACGCTATTTTTGGGGTGGGGG AAGGGGGAGGTGCACCACCACCCAATCTTGTTTCTCGTTGTTTGGTACCC TCCCCCCTCCCCCTCCAACGTAAACGCCACAGGTGCTGCACGGAAAACCC CGGGGTGCGTCCCGCTTTGCACGAAGTGTTGGAGAAAGTCCGAGGGATCC TGGAGGCTGGACAGAAACCGAGTGACGCCTCGACGGGGTCAGCGGGGATG GGAGGGGCGAGAGGGGTGGGAGGGATGGTGACCTCGGCGGGGAGCGTCCA CCATAGTGCGGGTGACGATCTCCTGCAGCTGTTTGATGACGTCAACAGCT CAAGTAAAAATATTGGGCGAGTCAATGGCGAAGGGAGCGGCGGGGAGGGG GGTGGAGAGGAAGGTATCACCGTCAGCGGCCCAAGCGGCAGCAGAAGCAG AAGCAGGGATAATGATCCCGCGCAACAAAGTTCCGCGCAATCCCAACCCC CACCTCCGTACGATCCTGCCGTCATGGCCTCGTCCCAGAGACCACCGCCG CTTCCGGCCCGACCGCCGCCGTATTCGGGAGTGGCGACAACAACGGCGGT GGCAAATAATGTGCTCGTTTCTCTCGAGGACGATGTGTCGGTCGCCACAG GGGTGGATGAGGGCGCCGCATCGGCGAACGACGACCCCGCGGAAGAGTTG GTGAATCTGAGGGCGGCTGAGGGCGAGGCGGGCACTGGCAACGAGATAGA CGAGGGACGCGAGCGCTGGTGGTCGGGCAAGGCGGGGACGACGCGAGCGC AGCAAGCACTGTCGAACGTGGGATCGACAAACGTTCTCGGTGGCACCCGT CATCGCTCCCCCAGTCACCCCAGATCTCAGTCACTGCTTCCGTCGGGTGG AGTGGGGATCGGCGGGAGCAAGAGCGCGTCCATATCGTGCGCACGGTCGA NNNNNNNNNNCGCTGCCGAGGGTGTTGGAGGCTGCCAAGGGCGGCGGTGT CCTCTCCTCGAACCCCAGGCTGCTGTGCGTCTGCTGCGTGAACGGCGGCG TCGAGACGCCCGTACGCGGGACGTCGCCAGGAGCGGGGGTCACCATTGGG GCCGGGGACTCGACGCTACCGCCTGTGGACGACGTCGCAAATGTGGTAGT TCGAGAGCCCGGCCACGTCTCGGTCCTTGACCTGTGGCACCGGGGACGCA CGGTAAGGTACCCCGTGGCCGCGGAGAGGGCCGCCATGAGCCCGAACCAG TCGGAGTCGGTAATCGCTGTGCTAGGCGGAGGAAGTCTGCACGTGTTTAG CATCCCGCGGAGGTGCCGGCTACAGGAGCAGGCCGTCGCGGCAGACTTGT GCATGTGGAGGTGAGGATACCGAGAGGGAGGGGAGAGGGCAGAGGGGGTT GTGTGAGGATGTTGTGGCAAAAAGTAGAGACCAGAACGTGAACGTATTTT GGGTAAAACAATCGTGGTTCTGAGCGAGCAAAGACCCAGAGGTCGTTCTT TCGCCGTCGACCGCGTCTGTACAAAGCATCCTGCGCTGTTACGTGTAGTA TCGATAACGGGCCTCCGCCACGTATGGCTCGAAATATCAGCACTTTTACA GTTTGTCAATGGTGATAGAAGTAGAAAGTACGGAAATCGGGAGAGGTTGG CGTGTGCCAAGTTCCACCCTTGTATTATTAAAAAAAACCTATCCTGTGCG CGCGTTCGTCATTCCGCCTTGTGATGCCCTGGCATCCCCCCCGATGTAGA TGGCTGTCCCCGTGGGGACTCGCCCTCGTAACCGACACTGCTGTGTTTTA CTGGAGCGTTTCGGACAGCCACGCCGGAGGCCAGAGCCCGGATCGTAACG CCGGTCGGAGCAGCAGCGGCGGCGGGAGCAGTGGCGACCGAGACTCGGTT GATAGCGCTCACGAGAAAGACGCGGCGGGGCGATTCCGGAGACCCAGGAA GGCGTTCGCGCGGCGTCGGACCCTCACGAAGCCCGGCACCCTGCACCGGG TCTACGACTACCAAGCCTCGGCGGACGGGCGATGGGGCATGTTGCTGTGT GCCGTGGTGAACGACGACTGGGGGGGTGGGGTGGGCGGGGGAAGTGGAAA TGGCTACGGTAGTCACAGCAGTGGGATAGAGGGGGGTGGTGGCCCCGTGA AGGTGGACCTCCACAGCTTCGAGATGAAGACGACCTTCGAGTTCGAGGTT CTCGGGGGCGCTCTTCTGACGATGCCGGGATCCAATCCACCACTGAACCT GTTGGGCCTGGTTGTGCGCGGGGAGGCGGGTGCGACGGAGCTCCGCGTGC TGGACCTCGACAGGTCGCTCGCGCGGGCAGAGGGCCCCGAGGCCCTGGAG CGCCTGGCGATGCACGGGGAAGGGTGGCTGATCGCCACCACCCACGTGAT TGCCGACGGGGACCTGCGAGGTTCGTCCGCGTGTCGGGTGGTGACATCCG ACGGGGCGATGGGAGACGCGGAGTCGCCGCCGCCGACGTCTCTCGTGTCA CCCCCGGTCTTCCTCCGGCAGTGGACGGAGAACACGAACGTGCTGTTTCT GGTGGGGTGCCACGGCCTGCTCCTTCTCCTCGACGTGGTGACGGGGGCTG AGCTGGCGCGCGCTTGGGCGTGTCTTCCTCCCGTAGTGGAGGCGGAGGTG GATCCCGACGTGGGGGATCTAGTGGTGGTGTCCACAGCCGACGAGGGGGG GGTTCACCGGCTGACCGTGCGTGCCGCCGTACTGCAGGAGAGCGTGGAGT ACGACCACAAGGACGCCGAGATGGCGGCGAGGGTGTCGGCGTTGACTGGT TACGGGGCTGGGCGGTCTTTGTTGCCGCGTCGAAGAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig15769:3785..7226+

>mRNA_H-elongata_contig15769.3748.1 ID=mRNA_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2436bp|location=Sequence derived from alignment at H-elongata_contig15769:3785..7226+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCCGAACCAGTCGGAGTCGGTAATCGCTGTGCTAGGCGGAGGAAG
TCTGCACGTGTTTAGCATCCCGCGGAGGTGCCGGCTACAGGAGCAGGCCG
TCGCGGCAGACTTGTGCATGTGGAGATGAGCCCGAACCAGTCGGAGTCGG
TAATCGCTGTGCTAGGCGGAGGAAGTCTGCACGTGTTTAGCATCCCGCGG
AGGTGCCGGCTACAGGAGCAGGCCGTCGCGGCAGACTTGTGCATGTGGAG
ATGGCTGTCCCCGTGGGGACTCGCCCTCGTAACCGACACTGCTGTGTTTT
ACTGGAGCGTTTCGGACAGCCACGCCGGAGGCCAGAGCCCGGATCGTAAC
GCCGGTCGGAGCAGCAGCGGCGGCGGGAGCAGTGGCGACCGAGACTCGGT
TGATAGCGCTCACGAGAAAGACGCGGCGGGGCGATTCCGGAGACCCAGGA
AGGCGTTCGCGCGGCGTCGGACCCTCACGAAGCCCGGCACCCTGCACCGG
GTCTACGACTACCAAGCCTCGGCGGACGGGCGATGGGGCATGTTGCTGTG
TGCCGTGGTGAACGACGACTGGGGGGGTGGGGTGGGCGGGGGAAGTGGAA
ATGGCTACGGTAGTCACAGCAGTGGGATAGAGGGGGGTGGTGGCCCCGTG
AAGGTGGACCTCCACAGCTTCGAGATGAAGACGACCTTCGAGTTCGAGGT
TCTCGGGGGCGCTCTTCTGACGATGCCGGGATCCAATCCACCACTGAACC
TGTTGGGCCTGGTTGTGCGCGGGGAGGCGGGTGCGACGGAGCTCCGCGTG
CTGGACCTCGACAGGTCGCTCGCGCGGGCAGAGGGCCCCGAGGCCCTGGA
GCGCCTGGCGATGCACGGGGAAGGGTGGCTGATCGCCACCACCCACGTGA
TTGCCGACGGGGACCTGCGAGGTTCGTCCGCGTGTCGGGTGGTGACATCC
GACGGGGCGATGGGAGACGCGGAGTCGCCGCCGCCGACGTCTCTCGTGTC
ACCCCCGGTCTTCCTCCGGCAGTGGACGGAGAACACGAACGTGCTGTTTC
TGGTGGGGTGCCACGGCCTGCTCCTTCTCCTCGACGTGGTGACGGGGGCT
GAGCTGGCGCGCGCTTGGGCGTGTCTTCCTCCCGTAGTGGAGGCGGAGGT
GGATCCCGACGTGGGGGATCTAGTGGTGGTGTCCACAGCCGACGAGGGGG
GGGTTCACCGGCTGACCGTGCGTGCCGCCGTACTGCAGGAGAGCGTGGAG
TACGACCACAAGGACGCCGAGATGGCGGCGAGGGTGTCGGCGTTGACTGG
TTACGGGGCTGGGCGGTCTTTGTTGCCGCGTCGAAGAGGGTAGATGGCTG
TCCCCGTGGGGACTCGCCCTCGTAACCGACACTGCTGTGTTTTACTGGAG
CGTTTCGGACAGCCACGCCGGAGGCCAGAGCCCGGATCGTAACGCCGGTC
GGAGCAGCAGCGGCGGCGGGAGCAGTGGCGACCGAGACTCGGTTGATAGC
GCTCACGAGAAAGACGCGGCGGGGCGATTCCGGAGACCCAGGAAGGCGTT
CGCGCGGCGTCGGACCCTCACGAAGCCCGGCACCCTGCACCGGGTCTACG
ACTACCAAGCCTCGGCGGACGGGCGATGGGGCATGTTGCTGTGTGCCGTG
GTGAACGACGACTGGGGGGGTGGGGTGGGCGGGGGAAGTGGAAATGGCTA
CGGTAGTCACAGCAGTGGGATAGAGGGGGGTGGTGGCCCCGTGAAGGTGG
ACCTCCACAGCTTCGAGATGAAGACGACCTTCGAGTTCGAGGTTCTCGGG
GGCGCTCTTCTGACGATGCCGGGATCCAATCCACCACTGAACCTGTTGGG
CCTGGTTGTGCGCGGGGAGGCGGGTGCGACGGAGCTCCGCGTGCTGGACC
TCGACAGGTCGCTCGCGCGGGCAGAGGGCCCCGAGGCCCTGGAGCGCCTG
GCGATGCACGGGGAAGGGTGGCTGATCGCCACCACCCACGTGATTGCCGA
CGGGGACCTGCGAGGTTCGTCCGCGTGTCGGGTGGTGACATCCGACGGGG
CGATGGGAGACGCGGAGTCGCCGCCGCCGACGTCTCTCGTGTCACCCCCG
GTCTTCCTCCGGCAGTGGACGGAGAACACGAACGTGCTGTTTCTGGTGGG
GTGCCACGGCCTGCTCCTTCTCCTCGACGTGGTGACGGGGGCTGAGCTGG
CGCGCGCTTGGGCGTGTCTTCCTCCCGTAGTGGAGGCGGAGGTGGATCCC
GACGTGGGGGATCTAGTGGTGGTGTCCACAGCCGACGAGGGGGGGGTTCA
CCGGCTGACCGTGCGTGCCGCCGTACTGCAGGAGAGCGTGGAGTACGACC
ACAAGGACGCCGAGATGGCGGCGAGGGTGTCGGCGTTGACTGGTTACGGG
GCTGGGCGGTCTTTGTTGCCGCGTCGAAGAGGGTAG
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