mRNA_H-elongata_contig157680.3746.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157680.3746.1
Unique NamemRNA_H-elongata_contig157680.3746.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157680.3746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157680contigH-elongata_contig157680:877..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157680.3746.1prot_H-elongata_contig157680.3746.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157680 911..1138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.8110487-UTR-H-elongata_contig157680:876..9101622929929.8110487-UTR-H-elongata_contig157680:876..910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157680 877..910 +
1691679212.032411-UTR-H-elongata_contig157680:876..9101691679212.032411-UTR-H-elongata_contig157680:876..910Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157680 877..910 +
1622929929.8343148-UTR-H-elongata_contig157680:1138..14871622929929.8343148-UTR-H-elongata_contig157680:1138..1487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157680 1139..1487 +
1691679212.0522864-UTR-H-elongata_contig157680:1138..14871691679212.0522864-UTR-H-elongata_contig157680:1138..1487Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157680 1139..1487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.8218334-CDS-H-elongata_contig157680:910..11381622929929.8218334-CDS-H-elongata_contig157680:910..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157680 911..1138 +
1691679212.04207-CDS-H-elongata_contig157680:910..11381691679212.04207-CDS-H-elongata_contig157680:910..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157680 911..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157680.3746.1

>prot_H-elongata_contig157680.3746.1 ID=prot_H-elongata_contig157680.3746.1|Name=mRNA_H-elongata_contig157680.3746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MNLETHKNPTARMAKSRSRLGDQQRRAHGQRRLNASKNTSTGDDFDLAGL
RGRFMIAVTDEERKLLSGHVLGIYL*
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mRNA from alignment at H-elongata_contig157680:877..1487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157680.3746.1 ID=mRNA_H-elongata_contig157680.3746.1|Name=mRNA_H-elongata_contig157680.3746.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=611bp|location=Sequence derived from alignment at H-elongata_contig157680:877..1487+ (Himanthalia elongata Himel1 dioecious)
GGATATTTGCGAGCAGAACTTTTCTCACATTCGCATGAACCTAGAAACTC
ACAAGAACCCCACAGCGCGCATGGCGAAATCACGGTCCAGGCTGGGAGAC
CAACAACGACGCGCGCATGGGCAGAGACGACTAAATGCCAGCAAGAACAC
TAGCACTGGAGACGATTTCGACCTGGCCGGCCTGAGGGGTAGATTCATGA
TAGCCGTAACGGATGAAGAACGCAAACTTCTATCCGGGCACGTTCTTGGA
ATCTACCTCTAGCATTTGTGTCCCCACGCTTCATTGAATAGTGAACCTAG
AACACAGCCCATCCCCAAGTACGGCGCGATTATGAAGGGGTAAGCAGGGG
TGAACCCGTACATGTATGGGTCTTCGAGCGGGGAGTGGGGGGCGCTTGGT
AGTTGTTTTATTTTTTTATTGTTTTTACGAGATGTTTGATAATTACGAGA
TTTGTGAGTGGGTTAGTATACACGAGTCATTTGGGACGAGAAGATAACGA
AGTCAGGTATTCATTAACTGAGGTGCCAGACGAATCCAACTTGAAGTGAG
CCACGTGGGGCTGCTCAACAGAACGTCCGAGAACGTGTAAAACGGAGTTA
CACAATCAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig157680:877..1487+

>mRNA_H-elongata_contig157680.3746.1 ID=mRNA_H-elongata_contig157680.3746.1|Name=mRNA_H-elongata_contig157680.3746.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig157680:877..1487+ (Himanthalia elongata Himel1 dioecious)
ATGAACCTAGAAACTCACAAGAACCCCACAGCGCGCATGGCGAAATCACG
GTCCAGGCTGGGAGACCAACAACGACGCGCGCATGGGCAGAGACGACTAA
ATGCCAGCAAGAACACTAGCACTGGAGACGATTTCGACCTGGCCGGCCTG
AGGGGTAGATTCATGATAGCCGTAACGGATGAAGAACGCAAACTTCTATC
CGGGCACGTTCTTGGAATCTACCTCTAGATGAACCTAGAAACTCACAAGA
ACCCCACAGCGCGCATGGCGAAATCACGGTCCAGGCTGGGAGACCAACAA
CGACGCGCGCATGGGCAGAGACGACTAAATGCCAGCAAGAACACTAGCAC
TGGAGACGATTTCGACCTGGCCGGCCTGAGGGGTAGATTCATGATAGCCG
TAACGGATGAAGAACGCAAACTTCTATCCGGGCACGTTCTTGGAATCTAC
CTCTAG
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