mRNA_H-elongata_contig157396.3741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157396.3741.1
Unique NamemRNA_H-elongata_contig157396.3741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.830e-23
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 RYCNTILCNMAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVXXXXXXXXXXXXXXXXXXXXXXXLDPTTFQSNPAAMTSSLNSAINACDIAGRYQ 303
            ++CNTIL NM INCLGKTKRW EA++VFERM T+L H+ D MT+ +V                        +P  F+SNP A+T+ LNSAINACDIAGR++
Sbjct:  185 KFCNTILINMGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVVNSLALSGRTEEAIELFDSMCKSTNPI-FKSNPPALTACLNSAINACDIAGRWE 284
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BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.860e-23
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:    1 RYCNTILCNMAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVXXXXXXXXXXXXXXXXXXXXXXXLDPTTFQSNPAAMTSSLNSAINACDIAGRYQ 303
            ++CNTIL NM INCLGKTKRW EA++VFERM T+L H+ D MT+ +V                        +P  F+SNP A+T+ LNSAINACDIAGR++
Sbjct:  330 KFCNTILINMGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVINSLAVSGRTEEAIELFDSMCKSTNPI-FKSNPPALTACLNSAINACDIAGRWE 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK7_ECTSI1.830e-2350.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNR8_9PHAE1.860e-2350.50Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157396contigH-elongata_contig157396:370..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue4.5e-16
Seed eggNOG ortholog2880.D7FIK7
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157396.3741.1prot_H-elongata_contig157396.3741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157396 397..1153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.524554-UTR-H-elongata_contig157396:369..3961622929929.524554-UTR-H-elongata_contig157396:369..396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157396 370..396 +
1691679211.920515-UTR-H-elongata_contig157396:369..3961691679211.920515-UTR-H-elongata_contig157396:369..396Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157396 370..396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.5406284-CDS-H-elongata_contig157396:396..5281622929929.5406284-CDS-H-elongata_contig157396:396..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157396 397..528 +
1691679211.931711-CDS-H-elongata_contig157396:396..5281691679211.931711-CDS-H-elongata_contig157396:396..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157396 397..528 +
1622929929.5551226-CDS-H-elongata_contig157396:1003..11531622929929.5551226-CDS-H-elongata_contig157396:1003..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157396 1004..1153 +
1691679211.942499-CDS-H-elongata_contig157396:1003..11531691679211.942499-CDS-H-elongata_contig157396:1003..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157396 1004..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157396.3741.1

>prot_H-elongata_contig157396.3741.1 ID=prot_H-elongata_contig157396.3741.1|Name=mRNA_H-elongata_contig157396.3741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVINALALSGRWEE
ALALYDRMIKSLDPTTFQSNPAAMTSSLNSAINACDIAGRYQT*
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mRNA from alignment at H-elongata_contig157396:370..1153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157396.3741.1 ID=mRNA_H-elongata_contig157396.3741.1|Name=mRNA_H-elongata_contig157396.3741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=784bp|location=Sequence derived from alignment at H-elongata_contig157396:370..1153+ (Himanthalia elongata Himel1 dioecious)
AGGTATTGCAACACCATCCTCTGCAACATGGCGATCAACTGTTTGGGGAA
GACGAAGCGTTGGGCGGAGGCGATCTCGGTGTTCGAGAGGATGTCGACCG
ATCTCGACCACCAGGCAGACGGCATGACGTACAGTGTCGTCATCAACGCT
CTTGCGCTGGTGGGAGGCCGCGCAAGAGAGATGCGGGTAGTCCGGGTGTG
GGTCGGGGTTGAGGGTTGGGATGGGTTGATTGTTTTTTCATGTCAGCCAC
ATCAGGCATGTGGGTCGAACACAAGACTTTGCTTGTTTTGAGGTGGATAG
TAATTAGTGACTGCGTTTCGCACAACACTCTTCTCGTGTACTTTTTTGTG
GAGCATGTTTCTCTATTTTTCTTCCTGTGTTTATGCCTACAAACAAACAT
GAACATCATCGGTTTCCGCCGTGCTCGAGAAGGGGACCACGCAATTGGCG
TACGTTTGCGTAAGGAATGAAGGGTTCCTCTATCTTTCGCGTTGAATCTA
CCCATCGCTTACGCGAAGACGATCACGGTCGTCATTTTTTGTTGTAGTTT
TTTTTTTAATAATATAAACTAATTCAAACCCTATTTGTATTTTGGTGTGG
TTTGTATTTTTGCCGGGTGCTACTTCGACGATAGAGCGGACGCTGGGAGG
AAGCCCTGGCGCTGTACGACAGGATGATCAAGTCGCTCGACCCTACGACG
TTTCAATCAAACCCCGCGGCGATGACCTCCTCCCTCAACTCCGCCATCAA
CGCGTGCGACATCGCGGGAAGGTACCAGACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig157396:370..1153+

>mRNA_H-elongata_contig157396.3741.1 ID=mRNA_H-elongata_contig157396.3741.1|Name=mRNA_H-elongata_contig157396.3741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig157396:370..1153+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATCAACTGTTTGGGGAAGACGAAGCGTTGGGCGGAGGCGATCTC
GGTGTTCGAGAGGATGTCGACCGATCTCGACCACCAGGCAGACGGCATGA
CGTACAGTGTCGTCATCAACGCTCTTGCGCTGATGGCGATCAACTGTTTG
GGGAAGACGAAGCGTTGGGCGGAGGCGATCTCGGTGTTCGAGAGGATGTC
GACCGATCTCGACCACCAGGCAGACGGCATGACGTACAGTGTCGTCATCA
ACGCTCTTGCGCTGAGCGGACGCTGGGAGGAAGCCCTGGCGCTGTACGAC
AGGATGATCAAGTCGCTCGACCCTACGACGTTTCAATCAAACCCCGCGGC
GATGACCTCCTCCCTCAACTCCGCCATCAACGCGTGCGACATCGCGGGAA
GGTACCAGACATGAAGCGGACGCTGGGAGGAAGCCCTGGCGCTGTACGAC
AGGATGATCAAGTCGCTCGACCCTACGACGTTTCAATCAAACCCCGCGGC
GATGACCTCCTCCCTCAACTCCGCCATCAACGCGTGCGACATCGCGGGAA
GGTACCAGACATGA
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