mRNA_H-elongata_contig157379.3740.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5JRV2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV2_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.290e-13 Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 10 VTSGLENIRMYLDDAIGFDDS-SVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPN 219
V GLE + YLDD I FD+ S+ HV + FF RLR H LKLSP KTR GAT +FLGH IS G+ P+
Sbjct: 153 VVHGLERVLAYLDDVICFDEEPSLGHVLNMIEFFRRLRQH-LKLSPGKTRVGATHANFLGHTISPAGVSPD 222
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: UPI001899E8EF (uncharacterized protein LOC119444767 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001899E8EF) HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11 Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
MR V +G+ ++ Y DD + D+ HV TL FF ++R +L + P+K+ G+T V+FLGH++ H +RP L
Sbjct: 1177 MRKVVAGISHVHHYFDDVLIATDTWETHVNTLECFFRQVRRGHLTIKPSKSEVGSTTVNFLGHIVGHGVLRPQL 1250
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5H2J7_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H2J7_9HEMI) HSP 1 Score: 63.2 bits (152), Expect = 7.460e-10 Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
VT GL+N+R Y+DD + S +H+ L T F R R + + ++ K G ++++FLGH+++ DG++P
Sbjct: 118 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 186
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5HNB0_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HNB0_9HEMI) HSP 1 Score: 63.2 bits (152), Expect = 7.510e-10 Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
VT GL+N+R Y+DD + S +H+ L T F R R + + ++ K G ++++FLGH+++ DG++P
Sbjct: 406 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 474
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5GEF8_9HEMI (RNA-directed DNA polymerase n=4 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GEF8_9HEMI) HSP 1 Score: 63.2 bits (152), Expect = 7.700e-10 Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
VT GL+N+R Y+DD + S +H+ L T F R R + + ++ K G ++++FLGH+++ DG++P
Sbjct: 205 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 273
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A131XKF8_9ACAR (RNA-directed DNA polymerase n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XKF8_9ACAR) HSP 1 Score: 63.2 bits (152), Expect = 7.710e-10 Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
MR V +G+ ++ Y DD + D+ H TL FF ++R +L + P+K+ G+T V FLGH++ H +RP L
Sbjct: 788 MRKVVAGIPHVHHYFDDVLIATDTWETHTDTLECFFRQVRRGHLTIKPSKSEIGSTSVKFLGHIVGHGVLRPQL 861
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5H8T1_9HEMI (RNA-directed DNA polymerase n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H8T1_9HEMI) HSP 1 Score: 63.2 bits (152), Expect = 7.750e-10 Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
VT GL+N+R Y+DD + S +H+ L T F R R + + ++ K G ++++FLGH+++ DG++P
Sbjct: 406 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 474
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A085NA80_9BILA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085NA80_9BILA) HSP 1 Score: 62.8 bits (151), Expect = 9.940e-10 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 1 MRLVTSGLE--NIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPN 219
M V +GL+ +YLDD I F S+ +H+ LA F RLR LK++ +K R V FLGHV+ HDGIRP+
Sbjct: 68 MERVLAGLKWNTCLVYLDDIIIFSRSADEHIEQLARVFQRLRTAGLKVNASKCRLFRKEVQFLGHVVGHDGIRPD 142
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A0A9Y3F4_LYGHE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y3F4_LYGHE) HSP 1 Score: 58.9 bits (141), Expect = 1.420e-9 Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
M VT GL+N+ +YLDD + S +H+ L F R + + + ++ K G T ++FLGH++S DG++P
Sbjct: 4 MNEVTRGLDNVVVYLDDCLISSTSEEEHLNDLRKLFNRFKEYGIVINAAKCEFGKTEIEFLGHLVSPDGVKP 75
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6B0VFR6_IXORI (RNA-directed DNA polymerase n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VFR6_IXORI) HSP 1 Score: 62.4 bits (150), Expect = 1.450e-9 Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
MR V GL N+ Y DD + ++ +H+ TL +FF R+R L + P K+ G V FLGH+I H+ +RP +
Sbjct: 1204 MRKVVQGLPNVYHYFDDVLIATENWEEHLETLKSFFQRVRDAGLTIRPTKSEVGFASVKFLGHIIGHNLLRPQI 1277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157379.3740.1 >prot_H-elongata_contig157379.3740.1 ID=prot_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKback to top mRNA from alignment at H-elongata_contig157379:205..435+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157379.3740.1 ID=mRNA_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig157379:205..435+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157379:205..435+ >mRNA_H-elongata_contig157379.3740.1 ID=mRNA_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig157379:205..435+ (Himanthalia elongata Himel1 dioecious)back to top |