mRNA_H-elongata_contig157363.3737.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157363.3737.1
Unique NamemRNA_H-elongata_contig157363.3737.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
            ++ D+G++ H+  DP  L DY  A     +E A G L+PVAGYG+LR+    G         ++ LK VAH P+    NL+  KRLT+
Sbjct:  751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPS-AIGNLIGGKRLTK 829          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 55.8 bits (133), Expect = 1.650e-7
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   13 EFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYP 312
            + W+ DSGAT+HMT +P  +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  +NLLS K++T+ F   + +YP
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2I0W3I8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W3I8_9ASPA)

HSP 1 Score: 56.6 bits (135), Expect = 6.380e-7
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLT 279
            W  DSGA+ H+T DP+ L++  P    D +  A GT LP+   G       QG     ++ R+L L+ + HVP+L  +NLLS ++LT
Sbjct:  186 WYLDSGASSHLTSDPLQLQNSQPYIGSDSISIANGTSLPITSTG-------QGLLPLPNTQRKLHLQKLLHVPSLT-HNLLSIQKLT 264          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 55.8 bits (133), Expect = 1.190e-6
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   13 EFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYP 312
            + W+ DSGAT+HMT +P  +   TP      V +A G   P+ G G + L            T+ +TL  V  VP+L  +NLLS K++T+ F   + +YP
Sbjct:  236 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 321          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7UAK9_CUCME (Reverse transcriptase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UAK9_CUCME)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-6
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 1
Query:    7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
            G+  W+ DSGAT+H+T        YTP    +++  A G+L P+AG G + +L D             +LK+V HVP+L  N LLS  ++T          P +   +    G
Sbjct:  233 GTNPWILDSGATDHLTGFSEHFVSYTPCAGNEKIRIADGSLAPIAGKGQI-VLFDG-----------FSLKNVLHVPSLSYN-LLSISKITHELHCKATFLPESVCFQDLNSG 332          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2I0VU15_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VU15_9ASPA)

HSP 1 Score: 53.9 bits (128), Expect = 5.610e-6
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLT 279
            W  DSGA+ H+T DP+ L+   P    D +  A GT LP+           QG     ++ R+L L+ + HVP+L  +NLLS ++LT
Sbjct:  186 WYLDSGASSHLTSDPLQLQHPLPYTGSDSISIANGTSLPINS-------TSQGILPLPNTPRKLYLQKLLHVPSLT-HNLLSIQKLT 264          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5D3BVA8_CUCME (TMV resistance protein N n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BVA8_CUCME)

HSP 1 Score: 53.5 bits (127), Expect = 7.200e-6
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1
Query:    7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
            G+  W+ DSGAT+H+T        YTP    + +  A G+L P+AG G + +L D             +L++V HVP L  N LLS  ++TR
Sbjct:  288 GTNLWILDSGATDHLTGFSEHFVTYTPCAGNEEIWIADGSLAPIAGKGQI-VLYDG-----------FSLQNVLHVPKLSYN-LLSISKITR 366          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: UPI00063AE43A (uncharacterized protein LOC105775269 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AE43A)

HSP 1 Score: 53.1 bits (126), Expect = 9.640e-6
Identity = 32/112 (28.57%), Postives = 50/112 (44.64%), Query Frame = 1
Query:   10 SEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
            +  W  DSGAT H+T DP GL +  P     ++    G  +PVA         + G+S F  S R   LK++ HVP + +N L+S  +           +P    ++  + G
Sbjct:  345 NNVWFPDSGATNHITNDPDGLYEVAPYTGKQKLFMGNGLSVPVA---------NTGSSSFVSSNRVFHLKNILHVPQICKN-LMSVAQFATDNSVYFEFHPRHCFVKDIKTG 446          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7UDS7_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UDS7_CUCME)

HSP 1 Score: 52.0 bits (123), Expect = 2.640e-5
Identity = 34/113 (30.09%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
            G+  W+ DSGAT+H+T        YTP    +++    G+L P+AG G + +L D             +L++V HVP L  N LLS  ++TR         P +   +    G
Sbjct:  257 GTNPWILDSGATDHLTGFSEHFVTYTPCVGNEKIRITDGSLAPIAGKGQI-VLFDG-----------FSLQNVLHVPKLSYN-LLSIGKITRELHCKATFLPKSVCFQDLNSG 356          
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7VD20_CUCME (Beta-galactosidase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7VD20_CUCME)

HSP 1 Score: 51.2 bits (121), Expect = 4.870e-5
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1
Query:    7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
            G+  W+ DS AT+H+T        YTP    +++    G+L P+AG G + +L D             +L++V HVP L  N LLS  ++TR
Sbjct:  102 GTNLWILDSRATDHLTGFSEHFVTYTPCAGNEKIRIVDGSLAPIAGKGQI-ILYDG-----------FSLQNVLHVPKLSYN-LLSISKITR 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A177TP70_9BASI1.010e-738.64Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2P6P2V5_ROSCH1.650e-735.00Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2I0W3I8_9ASPA6.380e-737.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6S473_ROSCH1.190e-635.00Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A5A7UAK9_CUCME2.150e-630.97Reverse transcriptase n=1 Tax=Cucumis melo var. ma... [more]
A0A2I0VU15_9ASPA5.610e-636.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3BVA8_CUCME7.200e-635.87TMV resistance protein N n=1 Tax=Cucumis melo var.... [more]
UPI00063AE43A9.640e-628.57uncharacterized protein LOC105775269 n=1 Tax=Gossy... [more]
A0A5A7UDS7_CUCME2.640e-530.09Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
A0A5A7VD20_CUCME4.870e-533.70Beta-galactosidase n=1 Tax=Cucumis melo var. makuw... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157363contigH-elongata_contig157363:285..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue7.2e-08
Seed eggNOG ortholog5270.UM01393P0
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.381779-CDS-H-elongata_contig157363:284..6291622929929.381779-CDS-H-elongata_contig157363:284..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157363 285..629 -
1691679211.8512204-CDS-H-elongata_contig157363:284..6291691679211.8512204-CDS-H-elongata_contig157363:284..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157363 285..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157363.3737.1prot_H-elongata_contig157363.3737.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157363 285..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157363.3737.1

>prot_H-elongata_contig157363.3737.1 ID=prot_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
RRGSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYG
HLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPM
RVYPAAALIRPRRGG
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mRNA from alignment at H-elongata_contig157363:285..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157363.3737.1 ID=mRNA_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig157363:285..629- (Himanthalia elongata Himel1 dioecious)
CGGCGTGGGAGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCATAT GACACAAGACCCGGTGGGTCTAGAGGATTACACTCCGGCACCCGCGGGCG ATCGAGTGGAGAGCGCCGGTGGTACCCTCCTTCCGGTGGCGGGATATGGA CATTTACGCCTCCTGGTGGACCAAGGCAACAGCAAATTCACCGACTCGAC GCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGA ATAATCTTCTCTCTACGAAACGACTGACGCGGTTTTTCGACGCGCCGATG CGCGTCTACCCAGCGGCTGCATTGATCCGCCCCCGGCGAGGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig157363:285..629-

>mRNA_H-elongata_contig157363.3737.1 ID=mRNA_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig157363:285..629- (Himanthalia elongata Himel1 dioecious)
CGGCGTGGGAGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCATAT
GACACAAGACCCGGTGGGTCTAGAGGATTACACTCCGGCACCCGCGGGCG
ATCGAGTGGAGAGCGCCGGTGGTACCCTCCTTCCGGTGGCGGGATATGGA
CATTTACGCCTCCTGGTGGACCAAGGCAACAGCAAATTCACCGACTCGAC
GCGCCAGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGA
ATAATCTTCTCTCTACGAAACGACTGACGCGGTTTTTCGACGCGCCGATG
CGCGTCTACCCAGCGGCTGCATTGATCCGCCCCCGGCGAGGAGGCCGGCG
TGGGAGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCATATGACAC
AAGACCCGGTGGGTCTAGAGGATTACACTCCGGCACCCGCGGGCGATCGA
GTGGAGAGCGCCGGTGGTACCCTCCTTCCGGTGGCGGGATATGGACATTT
ACGCCTCCTGGTGGACCAAGGCAACAGCAAATTCACCGACTCGACGCGCC
AGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGAATAAT
CTTCTCTCTACGAAACGACTGACGCGGTTTTTCGACGCGCCGATGCGCGT
CTACCCAGCGGCTGCATTGATCCGCCCCCGGCGAGGAGGC
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