mRNA_H-elongata_contig15725.3731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15725.3731.1
Unique NamemRNA_H-elongata_contig15725.3731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 5.680e-31
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:   37 DSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGTAAPEELYRKMRARGHW 318
            +S+YW + +R     DLGH CRECKRP + I ETIAIRRGGRIE++YH++CFS   DPR+Q  +S   GK+V  + GT AP   Y+KMR   HW
Sbjct:   28 ESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A8J1Z4U7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z4U7_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 2.830e-23
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:   25 GNCDDSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGTAAPEELYRKMRARGHW 318
            G  D++ YWDY  R T R DLGH CREC++PFS I E I  RRG RI  +YH +CFS   DPRSQ  SS + G  V   +  AAP   + KMR   H+
Sbjct:   73 GAGDETLYWDYQHRLTLRSDLGHKCRECRKPFSKIGEPITERRGSRIACRYHAACFSGYADPRSQARSSTHEGNLV-GTQFEAAPGTPFSKMRTDTHF 169
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 101 bits (251), Expect = 3.280e-23
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   25 GNCDDSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGT---AAPEELYRKMRARGHW 318
            G  D++ YWDY  R   R DLGH+CREC++PF+ + E I  RRG RI  +YH  CFS   DPRSQ  SS + G+    L GT   AAP+  + KMR + H+
Sbjct:  164 GAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPITERRGSRISTRYHAECFSGYADPRSQARSSTHEGR----LAGTQFEAAPDGPFSKMRTQSHF 260
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: L1IGL9_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IGL9_GUITC)

HSP 1 Score: 95.1 bits (235), Expect = 3.850e-23
Identity = 45/102 (44.12%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   13 TAFFGNCDDSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGTAAPEELYRKMRARGHW 318
            T   G  +++ YWD+  R   R DLGH CRECK+PF  + + +  RRG R+ L+YH SCFS   DPRSQ  SSA VG      + + AP     KMR   H+
Sbjct:    9 TTNIGAGNETEYWDFVHRKVERTDLGHRCRECKQPFDRLGDPLTERRGARVSLRYHTSCFSGYKDPRSQSLSSAYVGTL-SGTQSSQAPTSRTHKMRTDSHF 109
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 92.0 bits (227), Expect = 4.910e-22
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   46 YWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGTAAPEELYRKMRARGHW 318
            YW    R     D+GH C+ECKRPF  + E + +RRGGRIEL+YH+ C+S   DPR+Q +SS N  +   AL   AAP   +RKMR   H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALSA-AAPALPFRKMRTSSHF 107
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 78.2 bits (191), Expect = 6.450e-15
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   37 DSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSSANVGKF 249
            D  YW +  R     DLGH+CRECK+P +++ + IA RRG R++++YH++CFS   DPRSQ   SA + K+
Sbjct:   65 DEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERRGARVQMRYHRACFSDDGDPRSQ--DSAKLSKW 133
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BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Match: A0A0L0DNU8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNU8_THETB)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-6
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   91 HLCRECKRPFSSINETIAIRRGGRIELKYHQSCFSMIPDPRSQPTSS 231
            HLCRECK   +  ++ I IR G RI+L+YHQ CFS   DPRSQ  SS
Sbjct:   72 HLCRECKAYITKGSKYI-IRHGARIQLRYHQECFSGDADPRSQAGSS 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15725.3731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA5.680e-3154.26Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J1Z4U7_9DINO2.830e-2350.00Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J2F2Y4_9DINO3.280e-2347.52Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
L1IGL9_GUITC3.850e-2344.12Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1LEE0_NEODS4.910e-2247.25Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A3P3YIB7_PLABS6.450e-1546.48Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L0DNU8_THETB1.160e-657.45Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15725contigH-elongata_contig15725:5263..5925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog227086.JGI_V11_126617
EggNOG OGs2E6M4@1,2SDAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.6796918-CDS-H-elongata_contig15725:5262..54311622929928.6796918-CDS-H-elongata_contig15725:5262..5431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15725 5263..5431 -
1691679211.6789978-CDS-H-elongata_contig15725:5262..54311691679211.6789978-CDS-H-elongata_contig15725:5262..5431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15725 5263..5431 -
1622929928.6921868-CDS-H-elongata_contig15725:5773..59251622929928.6921868-CDS-H-elongata_contig15725:5773..5925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15725 5774..5925 -
1691679211.6903682-CDS-H-elongata_contig15725:5773..59251691679211.6903682-CDS-H-elongata_contig15725:5773..5925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15725 5774..5925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15725.3731.1prot_H-elongata_contig15725.3731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15725 5263..5925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15725.3731.1

>prot_H-elongata_contig15725.3731.1 ID=prot_H-elongata_contig15725.3731.1|Name=mRNA_H-elongata_contig15725.3731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
SSSSTAFFGNCDDSRYWDYAFRFTHRGDLGHLCRECKRPFSSINETIAIR
RGGRIELKYHQSCFSMIPDPRSQPTSSANVGKFVDALKGTAAPEELYRKM
RARGHW*
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mRNA from alignment at H-elongata_contig15725:5263..5925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15725.3731.1 ID=mRNA_H-elongata_contig15725.3731.1|Name=mRNA_H-elongata_contig15725.3731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=663bp|location=Sequence derived from alignment at H-elongata_contig15725:5263..5925- (Himanthalia elongata Himel1 dioecious)
TCGTCATCATCGACCGCATTCTTTGGGAACTGTGACGATTCGCGCTACTG
GGATTATGCCTTTCGTTTCACGCACAGGGGAGATCTGGGCCATCTCTGTA
GGGAGTGCAAGAGACCTTTTTCTAGTATAAATGAGACGATCGCCATAAGA
AGGTGAGGGAAATAATGGATGAAAAACAATCATAGAGCCCCCATTCACCC
CTCTTATATGAGTGCTTCATCCTCGGCGGGGAGTGCGCGGCTCTTATTCG
TGGGGATGGAGGCTCGAGTCCATGGGCATCAGTCAGCTTGATTTATTTAT
GACTTTCGTTGAAAATGGGATACGCTGCCGAGGCCTCGGGCACACACATA
CTGTTAAACATTACTGCGAATACCGTGCCGTGTCAGCCATCGGGATGACC
CCTCCACATATGACCCCCACCCGGCCCCCGCCTCTACCGTCGGCGTGCCT
GTGTACGGTCAAATGCTCACCCAACTATGTTCACCTCACTCAAGAGGGGG
GCGGATCGAGCTCAAATATCATCAATCGTGCTTCAGCATGATCCCTGATC
CTCGCAGTCAGCCTACGAGCTCGGCGAATGTTGGCAAGTTCGTGGATGCG
CTCAAGGGTACCGCGGCACCGGAAGAGCTGTATCGCAAGATGCGGGCGCG
AGGTCACTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig15725:5263..5925-

>mRNA_H-elongata_contig15725.3731.1 ID=mRNA_H-elongata_contig15725.3731.1|Name=mRNA_H-elongata_contig15725.3731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig15725:5263..5925- (Himanthalia elongata Himel1 dioecious)
TCGTCATCATCGACCGCATTCTTTGGGAACTGTGACGATTCGCGCTACTG
GGATTATGCCTTTCGTTTCACGCACAGGGGAGATCTGGGCCATCTCTGTA
GGGAGTGCAAGAGACCTTTTTCTAGTATAAATGAGACGATCGCCATAAGA
AGTCGTCATCATCGACCGCATTCTTTGGGAACTGTGACGATTCGCGCTAC
TGGGATTATGCCTTTCGTTTCACGCACAGGGGAGATCTGGGCCATCTCTG
TAGGGAGTGCAAGAGACCTTTTTCTAGTATAAATGAGACGATCGCCATAA
GAAGAGGGGGGCGGATCGAGCTCAAATATCATCAATCGTGCTTCAGCATG
ATCCCTGATCCTCGCAGTCAGCCTACGAGCTCGGCGAATGTTGGCAAGTT
CGTGGATGCGCTCAAGGGTACCGCGGCACCGGAAGAGCTGTATCGCAAGA
TGCGGGCGCGAGGTCACTGGTAAAGGGGGGCGGATCGAGCTCAAATATCA
TCAATCGTGCTTCAGCATGATCCCTGATCCTCGCAGTCAGCCTACGAGCT
CGGCGAATGTTGGCAAGTTCGTGGATGCGCTCAAGGGTACCGCGGCACCG
GAAGAGCTGTATCGCAAGATGCGGGCGCGAGGTCACTGGTAA
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