mRNA_H-elongata_contig1572.3724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1572.3724.1
Unique NamemRNA_H-elongata_contig1572.3724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.020e-66
Identity = 128/338 (37.87%), Postives = 196/338 (57.99%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVE-RPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E  G  G G +  V+  P+G+  + ++  F    +K+G+I+ ++ RLVA+GF Q+ ++ Y  SSSP P+ ASI+++L +    G  +   DV  AY  A ++EE++ +LP    D   K+   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV +IV+YVDD+LVA + + D E+ +  L   FP K LG+  ++ GC I RD  AGTL+ +Q  YI ++ ERF V  TS +P+  G     K +        E+  + P RE +G +MW +T +RPD+SFAV  +A+    P   HW A QK L YL  T +LGITY
Sbjct:  755 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1084          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.310e-66
Identity = 128/338 (37.87%), Postives = 196/338 (57.99%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVE-RPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E  G  G G +  V+  P+G+  + ++  F    +K+G+I+ ++ RLVA+GF Q+ ++ Y  SSSP P+ ASI+++L +    G  +   DV  AY  A ++EE++ +LP    D   K+   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV +IV+YVDD+LVA + + D E+ +  L   FP K LG+  ++ GC I RD  AGTL+ +Q  YI ++ ERF V  TS +P+  G     K +        E+  + P RE +G +MW +T +RPD+SFAV  +A+    P   HW A QK L YL  T +LGITY
Sbjct: 1134 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1463          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.320e-66
Identity = 128/338 (37.87%), Postives = 196/338 (57.99%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVE-RPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E  G  G G +  V+  P+G+  + ++  F    +K+G+I+ ++ RLVA+GF Q+ ++ Y  SSSP P+ ASI+++L +    G  +   DV  AY  A ++EE++ +LP    D   K+   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV +IV+YVDD+LVA + + D E+ +  L   FP K LG+  ++ GC I RD  AGTL+ +Q  YI ++ ERF V  TS +P+  G     K +        E+  + P RE +G +MW +T +RPD+SFAV  +A+    P   HW A QK L YL  T +LGITY
Sbjct: 1154 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1483          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 1.330e-66
Identity = 128/338 (37.87%), Postives = 196/338 (57.99%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVE-RPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E  G  G G +  V+  P+G+  + ++  F    +K+G+I+ ++ RLVA+GF Q+ ++ Y  SSSP P+ ASI+++L +    G  +   DV  AY  A ++EE++ +LP    D   K+   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV +IV+YVDD+LVA + + D E+ +  L   FP K LG+  ++ GC I RD  AGTL+ +Q  YI ++ ERF V  TS +P+  G     K +        E+  + P RE +G +MW +T +RPD+SFAV  +A+    P   HW A QK L YL  T +LGITY
Sbjct: 1297 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1626          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 227 bits (579), Expect = 1.880e-66
Identity = 128/341 (37.54%), Postives = 196/341 (57.48%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVERPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKK--VDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTS--IVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E+       VW++VE P+G   +  + +FK   D +G IE+Y+ RLVA+GF Q + I Y+E+ SP   + S+R+++ ++A    E+ Q+DV  A+L  N+EEE++   PE +    K+  V  LKK++YGL  A   W   F   + + GF+ +  D C++ ++  G     +++YVDD+L+AS+      +    L   F +K +G+ASY +G  I RDR+ G L  +Q  YI+ V ERFG+ K S  I P   G K  S    PQ + E + M +IPY   VG L++A T TRPDISFAV  L +++ NPG  HW+A +K ++YL  T    +TY
Sbjct:   35 AMNDELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDK-FSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTY 373          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 225 bits (574), Expect = 8.950e-66
Identity = 126/342 (36.84%), Postives = 196/342 (57.31%), Query Frame = 1
Query:    1 RAIAREINGQTGRGVWQVVERPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAY--CDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSI--VPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            +A+  E+      GVW +VE PKG   +  + +FK   D  G I +Y+ RLVA+GF Q + I Y+E+ SP  ++ S R+++ ++A    E+ Q+DV  A+L  N++E IY   PE +   DS++ V  LK+++YGL  A   W + F   + + GF+ +  D C++ +   G    ++V+YVDD+L+AS+      + +R L S F +K LG AS+ LG  I RDR+ G L  +Q  YI  V  RFG++  +    P A G K  S    P+ + E +DM + PY   VG LM+A   TRPDI++ V  L ++  NPG  HW+ A++ ++YL RT +  +TY
Sbjct:   24 KAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDK-FSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY 363          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 1.590e-65
Identity = 125/338 (36.98%), Postives = 194/338 (57.40%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVE-RPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKKVDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSIVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E  G  G G +  V+  P+G+  + ++  F    +K+G+I+ ++ RLVA+GF Q+ ++ Y  SSSP P+ ASI+++L +    G  +   DV  AY  A ++EE++ +LP    D   ++   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV +IV+YVDD+LVA + + D E+ +  L   FP K L +  ++ GC I RD   GTL+ +Q  YI ++ +RF V  TS +P++ G     K D        E   + P RE +G +MW +T +RPD+SFAV  +A+    P   HW A QK L YL  T +LGITY
Sbjct:  309 AMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 638          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 228 bits (581), Expect = 8.470e-65
Identity = 127/341 (37.24%), Postives = 201/341 (58.94%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVERPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKK--VDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSI--VPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E++     GVW++V+  +    +  + +FK   D  G IE+++ RLVA+GF Q + I++ E+ SP   + S R+++ ++A    E+ Q+DV  A+L   +EEEI+   PE + ++ K+  V  LKK++YGL  A   W K F   + + GF  +  D CV+ +++    + +I+ YVDD+L+AS+  +  +     L S F +K+LG+ASY LG  I RDR  G L  +Q  YI  + +RFG+   +   VP + G K L+K+  P+T+ E  +M  IPY  +VG LM+A   TRPD+SFAV  L++F+ NPG  HW A +K L+YL RT +  + Y
Sbjct:  266 AMIAELDSMYKNGVWELVKPKENHKPIGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVVGNNFIFLIL-YVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRYLQRTKDYMLVY 604          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 228 bits (581), Expect = 1.170e-64
Identity = 130/341 (38.12%), Postives = 197/341 (57.77%), Query Frame = 1
Query:    4 AIAREINGQTGRGVWQVVERPKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKK--VDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTSI--VPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            A+  E+       VW +V+ P G   +  + +FK   D  G+IE+Y+ RLVA+GF Q + + Y+E+ SP  ++ S R+V+ ++A    E+ Q+DV  A+L  ++ E++Y   P+ +  S K+  V  LKK++YGL  A   W   F   + + GF+ +  D C++ +I  G  +  +V+YVDD+L+AS       +  R L   F +K LG+AS+ LG  I RDR+ G L  +Q  YI  V ERF ++  +    P   G K LSK   PQ D E  +M++IPY   VG LM+A   TRPDI+FA+  L +F+ +PG  HWRAA+K L+YL RT +  +TY
Sbjct:  296 AMVDELKSMDNNNVWDLVDLPNGCRPIGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYLKI-SGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTY 634          
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 218 bits (556), Expect = 1.250e-64
Identity = 126/321 (39.25%), Postives = 190/321 (59.19%), Query Frame = 1
Query:   64 PKGKTVLDTRVLFKRTIDKDGRIEKYECRLVAQGFRQVKDIHYEESSSPTPAQASIRMVLIMIAALG*EVQQLDVDMAYLEANVEEEIYAELPEAYCDSRKK--VDLLKKAMYGLVHAGLLW*KPFGIELETKGFQRSQADPCVFRRILHGIVVAVIVVYVDDLLVASATKRDEEQAVRGLCSCFPIKKLGKASYYLGCHITRDRNAGTLKFNQHQYIQNVAERFGVTKTS--IVPSAAGGKALSKSDSPQTDAEVEDMRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKALQYLWRTGNLGITY 1014
            P+G   +  + +FK  +D +G IE+++ RLVA+GF Q   + Y+E+ SP   + S+R+V+ M+A    E+ Q+DV  A+L  N++EE++ + PE +    K+  V  LKK++YGL  A   W   F   + + GF+ +  D C++ +I  G    ++V+YVDD+L+A+       Q    L   F +K +G+ASY +G  I+RDR+ G L  +Q  YI  V ERF + K S  IVP   G K  S +  P+ + E + M QIPY  IVG LM+A T TRP ISFAV  L +++ NPG  HW+AA+K L+YL  T +  +TY
Sbjct:    2 PEGCKRVGCKWVFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRYLQGTKDRMLTY 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1572.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE1.020e-6637.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.310e-6637.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.320e-6637.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.330e-6637.87Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A2P6S2B9_ROSCH1.880e-6637.54Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A438HUL4_VITVI8.950e-6636.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JC10_9PHAE1.590e-6536.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH8.470e-6537.24Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9GV19_FAGSY1.170e-6438.12Integrase catalytic domain-containing protein n=6 ... [more]
A0A4V1T029_9SPHI1.250e-6439.25Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1572contigH-elongata_contig1572:1..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.4
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1023
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.2770147-CDS-H-elongata_contig1572:0..1981622929928.2770147-CDS-H-elongata_contig1572:0..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1572 1..198 -
1691679211.4537284-CDS-H-elongata_contig1572:0..1981691679211.4537284-CDS-H-elongata_contig1572:0..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1572 1..198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.2861745-UTR-H-elongata_contig1572:198..10231622929928.2861745-UTR-H-elongata_contig1572:198..1023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1572 199..1023 -
1691679211.465315-UTR-H-elongata_contig1572:198..10231691679211.465315-UTR-H-elongata_contig1572:198..1023Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1572 199..1023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1572.3724.1prot_H-elongata_contig1572.3724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1572 1..198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1572.3724.1

>prot_H-elongata_contig1572.3724.1 ID=prot_H-elongata_contig1572.3724.1|Name=mRNA_H-elongata_contig1572.3724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MRQIPYREIVGVLMWAATMTRPDISFAVHQLAKFKDNPGPTHWRAAQKAL
QYLWRTGNLGITYGGE
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mRNA from alignment at H-elongata_contig1572:1..1023-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1572.3724.1 ID=mRNA_H-elongata_contig1572.3724.1|Name=mRNA_H-elongata_contig1572.3724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-elongata_contig1572:1..1023- (Himanthalia elongata Himel1 dioecious)
AGGGCGATCGCGCGCGAGATAAATGGGCAAACTGGTCGAGGCGTGTGGCA GGTGGTGGAACGCCCAAAAGGGAAGACGGTGTTGGACACGAGAGTACTTT TCAAGCGAACAATCGACAAGGATGGAAGGATCGAGAAGTATGAATGCCGT CTCGTGGCGCAAGGTTTCAGGCAGGTTAAAGACATACACTACGAGGAATC CTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGATGGTACTCATCATGA TCGCGGCTCTCGGCTAGGAGGTGCAGCAGCTTGACGTCGACATGGCCTAC CTGGAGGCCAATGTAGAGGAGGAGATCTACGCTGAGCTCCCGGAGGCATA CTGTGACTCCAGGAAGAAAGTCGACCTACTAAAGAAGGCAATGTACGGAC TCGTCCACGCCGGGTTGCTGTGGTAAAAACCGTTTGGGATCGAGCTCGAG ACAAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTTTCGGCGGAT TCTCCACGGGATAGTAGTAGCCGTCATCGTGGTCTACGTCGACGACCTGC TGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAGGGGCCTG TGCTCCTGTTTCCCCATCAAGAAACTGGGGAAGGCTTCATATTACCTGGG ATGCCACATCACGCGAGACCGGAACGCCGGGACACTGAAGTTCAACCAGC ATCAGTACATACAGAATGTGGCGGAACGTTTTGGCGTGACGAAGACCAGC ATCGTCCCGTCTGCGGCGGGAGGAAAAGCCCTTTCAAAATCAGACAGCCC GCAAACGGACGCAGAGGTTGAAGATATGCGCCAGATTCCCTACCGAGAAA TCGTCGGGGTCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCA TTCGCTGTGCACCAACTGGCAAAATTCAAAGACAACCCGGGACCGACACA CTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTGGGAACC TCGGGATCACCTACGGAGGGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig1572:1..1023-

>mRNA_H-elongata_contig1572.3724.1 ID=mRNA_H-elongata_contig1572.3724.1|Name=mRNA_H-elongata_contig1572.3724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig1572:1..1023- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATTCCCTACCGAGAAATCGTCGGGGTCCTAATGTGGGCAGC
GACGATGACCAGGCCCGACATTTCATTCGCTGTGCACCAACTGGCAAAAT
TCAAAGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTG
CAATATTTATGGCGCACTGGGAACCTCGGGATCACCTACGGAGGGGAAAT
GCGCCAGATTCCCTACCGAGAAATCGTCGGGGTCCTAATGTGGGCAGCGA
CGATGACCAGGCCCGACATTTCATTCGCTGTGCACCAACTGGCAAAATTC
AAAGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCA
ATATTTATGGCGCACTGGGAACCTCGGGATCACCTACGGAGGGGAA
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