mRNA_H-elongata_contig157191.3723.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A8F0JZU4_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZU4_9PHAE) HSP 1 Score: 303 bits (776), Expect = 3.120e-102 Identity = 163/172 (94.77%), Postives = 170/172 (98.84%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDVTI 516
VIS+YNGVLFSTPLLLGQALFFFRPALS++EKKL LWLLISSIFLFF GLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAK+IDP+KMLNYWRPMILLSTVLGA+LTPSADPITQLLLSGALFFLYFLGSLISINLTKK+VTI
Sbjct: 89 VISLYNGVLFSTPLLLGQALFFFRPALSRDEKKLILWLLISSIFLFFSGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKLIDPIKMLNYWRPMILLSTVLGAILTPSADPITQLLLSGALFFLYFLGSLISINLTKKEVTI 260
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A0R6LUQ7_UNDPI (Sec-independent protein translocase component n=24 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ7_UNDPI) HSP 1 Score: 265 bits (678), Expect = 2.410e-87 Identity = 143/170 (84.12%), Postives = 154/170 (90.59%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
+IS Y GVLFSTPLLL Q LFFFRPAL+KNEK + + LLISSI LF LGL FSYF+LIPAALNFFIFYGSEVIEPFWSF+QYFNFVS LFFSTGLVFQVPIVQIILSL+KIIDP+KMLNYWRPMIL ST+LGAVLTPSADPITQLLLS ALF LYFLGS+ SINL KK+V
Sbjct: 90 IISFYAGVLFSTPLLLSQTLFFFRPALTKNEKNIIVGLLISSIVLFILGLLFSYFLLIPAALNFFIFYGSEVIEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQIILSLSKIIDPIKMLNYWRPMILFSTILGAVLTPSADPITQLLLSSALFLLYFLGSITSINLVKKEV 259
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A7U1AQM0_9PHAE (Sec-independent protein translocase component TatC n=4 Tax=Laminariales TaxID=2886 RepID=A0A7U1AQM0_9PHAE) HSP 1 Score: 264 bits (675), Expect = 6.890e-87 Identity = 140/170 (82.35%), Postives = 155/170 (91.18%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
+IS Y GVLFSTPLLL Q LFFFRPAL+KNEK + + LL+SSI LF LGL FSYF+LIPAALNFFIFYG+EVIEPFWSF+QYFNFVS LFFSTGLVFQVPIVQIILSL+KI+DP+KMLNYWRPMIL ST+LGAVLTPSADPITQLLLSGALF LYFLGS+ SINL K++V
Sbjct: 90 IISFYAGVLFSTPLLLSQTLFFFRPALTKNEKNIIVGLLVSSIVLFVLGLLFSYFLLIPAALNFFIFYGAEVIEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQIILSLSKIVDPIKMLNYWRPMILFSTILGAVLTPSADPITQLLLSGALFLLYFLGSITSINLVKREV 259
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A8F0F9L1_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9L1_9PHAE) HSP 1 Score: 263 bits (671), Expect = 2.980e-86 Identity = 138/169 (81.66%), Postives = 155/169 (91.72%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKD 507
VIS Y GV+FSTPLLL Q LFFFRPAL+KNEK + + LLISSIFLF LGL FSYF+LIPAALNFFIFYGSEV+EPFWSF+QYFNFVS LFFSTGLVFQVPIVQ+ILSL+++IDP KML+YWRPMIL ST+LGA+LTPSADPITQLLL+GALFFLYFLGS+ SINL KK+
Sbjct: 90 VISFYAGVIFSTPLLLSQTLFFFRPALTKNEKNIVVLLLISSIFLFILGLIFSYFLLIPAALNFFIFYGSEVVEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQVILSLSRLIDPKKMLDYWRPMILFSTILGAILTPSADPITQLLLAGALFFLYFLGSITSINLIKKE 258
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A2R4QPY8_9PHAE (Sec-independent protein translocase component TatC n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY8_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.210e-85 Identity = 137/170 (80.59%), Postives = 153/170 (90.00%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
+IS GVLFSTPLLL Q LFFFRPAL+KNE+ + +W+LISS+FLFFLGL FSYF+LIPAALNFF+FYGSEVIEP WSF+QYFNFVSALFFSTGLVFQVPIVQ+ILSL+KIIDP+KM NYWRPMIL ST+LGAVLTPSADPITQLLLS ALF LY LGS+ SINL KK +
Sbjct: 90 IISFSIGVLFSTPLLLSQLLFFFRPALNKNEQNIIVWILISSVFLFFLGLLFSYFLLIPAALNFFVFYGSEVIEPLWSFNQYFNFVSALFFSTGLVFQVPIVQVILSLSKIIDPIKMFNYWRPMILFSTILGAVLTPSADPITQLLLSSALFLLYILGSITSINLIKKPI 259
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A141BSG3_9PHAE (TatC n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG3_9PHAE) HSP 1 Score: 258 bits (658), Expect = 3.420e-84 Identity = 136/169 (80.47%), Postives = 150/169 (88.76%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKD 507
+IS G+LFSTPLLL Q L FFRPAL+KNE+K WLL+SS+FLFFLGL FSYF+LIPAA+NFFIFYGSEVIEP WSF+QYF FVSALFFSTGLVFQVPIVQIILSL KI+DP+KM NYWRPMIL ST+LGA+LTPSADPITQLLLS ALF LYF+GSLISINL KK
Sbjct: 90 IISFSLGILFSTPLLLSQLLLFFRPALNKNERKSIFWLLLSSLFLFFLGLLFSYFLLIPAAINFFIFYGSEVIEPLWSFNQYFTFVSALFFSTGLVFQVPIVQIILSLFKIVDPIKMFNYWRPMILFSTILGAILTPSADPITQLLLSSALFLLYFIGSLISINLIKKQ 258
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A5A4MKB0_9PHAE (Sec-independent periplasmic protein translocase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MKB0_9PHAE) HSP 1 Score: 239 bits (610), Expect = 6.220e-77 Identity = 123/170 (72.35%), Postives = 148/170 (87.06%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
V+S+Y G+LFSTPL++ Q +FFFRPAL+KNEK + L+ L IFLFFLGLFFSYF+L+PAALNFF+ YGS+V+EP WSF+QYF+FVS LF S GLVFQVPI+Q++LS+++IIDPVKML YWRPMIL T+LGA+LTPSADPITQLLLS ALFFLYFLGSL SINL K +
Sbjct: 97 VMSIYTGLLFSTPLVIIQTIFFFRPALTKNEKNIILFTLTGCIFLFFLGLFFSYFLLVPAALNFFLLYGSDVVEPLWSFTQYFSFVSTLFVSAGLVFQVPIIQVMLSVSRIIDPVKMLGYWRPMILFCTMLGAILTPSADPITQLLLSSALFFLYFLGSLTSINLINKKL 266
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A8E6D5S5_9PHAE (Sec-independent protein translocase-like protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5S5_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.560e-74 Identity = 124/168 (73.81%), Postives = 141/168 (83.93%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKK 504
+IS Y G+LFSTP +L Q L FF+PALSKNEKK +WL SSI LFFLGL FSYF+LIPAALNFFI Y EVIEPFWSF+QYF FVSALFFSTGLVFQVPI+QI+LSL II+P KMLNYWR ++ TV+GAV+TPSADPITQLLLSGALF LY+LG +IS+ L KK
Sbjct: 94 IISFYTGLLFSTPFVLSQILLFFQPALSKNEKKTVIWLFFSSIILFFLGLVFSYFLLIPAALNFFINYSEEVIEPFWSFNQYFGFVSALFFSTGLVFQVPIIQIVLSLTNIIEPSKMLNYWRLILFFCTVIGAVITPSADPITQLLLSGALFLLYYLGCIISMVLKKK 261
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: A0A6B7EV76_9PHAE (Sec-independent periplasmic protein translocase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV76_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.770e-74 Identity = 120/170 (70.59%), Postives = 149/170 (87.65%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
V+S+Y G+LFSTPL++ Q +FFFRPAL+KNEK + L++L IFLFFLGLFFSYF+L+PAALNFF+ YGS+V+EP WSF+QYF+FVS LF STG+VFQVPIVQI+LS+++IIDP +ML+ WR MIL T+LGA+LTPSADPITQLLLSGALF LYFLGS+ SI+L KK +
Sbjct: 99 VMSIYTGILFSTPLVIIQTIFFFRPALTKNEKNIILFILTGCIFLFFLGLFFSYFLLVPAALNFFLLYGSDVVEPLWSFTQYFSFVSTLFVSTGIVFQVPIVQIMLSVSRIIDPKEMLSCWRAMILFCTILGAILTPSADPITQLLLSGALFLLYFLGSITSISLIKKPL 268
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Match: D1J7B2_ECTSI (Sec-independent periplasmic protein translocase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B2_ECTSI) HSP 1 Score: 232 bits (592), Expect = 3.350e-74 Identity = 119/170 (70.00%), Postives = 149/170 (87.65%), Query Frame = 1
Query: 1 VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLFFSYFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKIIDPVKMLNYWRPMILLSTVLGAVLTPSADPITQLLLSGALFFLYFLGSLISINLTKKDV 510
V+S+Y GVLF+TPL++ Q +FFFRPAL+KNEK + L++L I LFFLGLFFSYF+L+PAALNFF+ YGS+V+EP WSF+QYF+FVS LF S GLVFQVPI+QI+LS+++IIDPV+ML+ WRPMILL T+LGA+LTPSADPITQLLLS ALF LYFLGS+ SIN+ K++
Sbjct: 97 VMSLYTGVLFATPLIIIQTIFFFRPALTKNEKNIILFILTGCIVLFFLGLFFSYFLLVPAALNFFLIYGSDVVEPLWSFTQYFSFVSTLFVSAGLVFQVPIIQIMLSVSRIIDPVEMLSCWRPMILLCTILGAILTPSADPITQLLLSSALFLLYFLGSITSINIINKNL 266 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157191.3723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157191.3723.1 >prot_H-elongata_contig157191.3723.1 ID=prot_H-elongata_contig157191.3723.1|Name=mRNA_H-elongata_contig157191.3723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp VISVYNGVLFSTPLLLGQALFFFRPALSKNEKKLTLWLLISSIFLFFLGLback to top mRNA from alignment at H-elongata_contig157191:981..1502- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157191.3723.1 ID=mRNA_H-elongata_contig157191.3723.1|Name=mRNA_H-elongata_contig157191.3723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig157191:981..1502- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157191:981..1502- >mRNA_H-elongata_contig157191.3723.1 ID=mRNA_H-elongata_contig157191.3723.1|Name=mRNA_H-elongata_contig157191.3723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig157191:981..1502- (Himanthalia elongata Himel1 dioecious)back to top |