mRNA_H-elongata_contig15707.3719.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.370e-46 Identity = 91/194 (46.91%), Postives = 127/194 (65.46%), Query Frame = 1
Query: 10 MCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVFDQCE-AILMSFAFSCRNVHIALDTIVLY 588
+CWA S TG VK++KF+ELVASNMLA+TNLAIC NLAL+I HR ++RVK+ SP L+ + L SI V + P W T +++G+ V W+ S++ LEF+ GI M I +L ++R+ E+ E WK+H RIR+YFGLTLI NL + V GT+ V E ++L+ ++ R++HIALDT VLY
Sbjct: 4 VCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLY 197
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE) HSP 1 Score: 152 bits (383), Expect = 3.990e-42 Identity = 81/197 (41.12%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVFD-QCEAILMSFAFSCRNVHIALDTIVLY 588
++ +CW R G +K++K++E +SNMLA+TNLAIC+NLAL++ HR +SRV ++ +P L+++FL S++A SVP W +++G+ V + + W+I S LEF+ GI M I +L +R+ + E WKLH RIR+YF LT+I NL + + G VF L+S ++ R H+ALDTIVLY
Sbjct: 8 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLY 204
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.960e-39 Identity = 71/171 (41.52%), Postives = 113/171 (66.08%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVFDQ 513
++ +CWA + L+K +KF+EL ++NMLAVTNLAICVNLAL++ HR +SRV +L SP+++ + L ++ +VP W T+++TG++ + W + S++ EFI GI M+ I +L ++R+ E+ E WK+H RIR+YFGLTLIA NL + + GT+ + +
Sbjct: 1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGE 171
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI) HSP 1 Score: 146 bits (368), Expect = 2.170e-39 Identity = 81/197 (41.12%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVF-DQCEAILMSFAFSCRNVHIALDTIVLY 588
++ +CW +S G +K++KF+E V+SNM+A+T+LAICVNLALI+ HR ++RV+++ SP L+ + L SI T +VPLW+T+ + G+ +V S G V+ S + LEF+ GI M I +L ++R+ E+ E W++ RIR+YF LTL+ N+ + + T+ V D E L +++ R +H+ALDT VLY
Sbjct: 73 MVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLY 269
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.840e-39 Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVF-DQCEAILMSFAFSCRNVHIALDTIVLY 588
++ C+A + GL+K+I FV + +SNMLA TNL IC+NLALI+ HR ++RVK + SP+++ + L S +VPLW+T ++ G+H S + ++I S Y +EF+ GI M+ I +LA++R+ E+ E W+ H RIR+YF LTL NL + + G VF D+ E + +++ R +HI+ DT+VLY
Sbjct: 23 MVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLY 219
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI) HSP 1 Score: 140 bits (354), Expect = 4.790e-39 Identity = 71/169 (42.01%), Postives = 109/169 (64.50%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVF 507
++ +CW R G +K++K++E +SNMLA+TNLAIC+NLAL++ HR +SRVK++ +P L+++FL S++A SVP W +++G+ V + + W+I S LEF+ GI M I +L +R+ + E WK+H RIR+YF LTLIA NL + + G VF
Sbjct: 1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVF 169
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 142 bits (358), Expect = 7.340e-39 Identity = 79/197 (40.10%), Postives = 126/197 (63.96%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTL-IVFDQCEAILMSFAFSCRNVHIALDTIVLY 588
++ +CWA +K++KF+EL ASNMLA+TNLAICVNL+LI+ R S VK++ + KL+++FL S +VP W +++G+ +G + + +V+ S + +EF+ GI M I +L ++R+ E+ E W +H +R+YFGLTL+ + NL + V GT+ ++ D +LM F++ R V IALDTIVL+
Sbjct: 1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLH 197
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI) HSP 1 Score: 142 bits (357), Expect = 3.160e-38 Identity = 80/197 (40.61%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVFDQCEAILMS-FAFSCRNVHIALDTIVLY 588
++ +CWA L+K++KFVEL +S+MLA+T+LAICVNLALI+ HR + RV+++ SP L+ + L S+ T +VPLW+T+++ G+ +V S G+ V+ S + LEFI G+ M I +L ++RL E+ E W++H RIR+Y LT++ +L + + T+ V + ++ +A+ R +HIALDT VLY
Sbjct: 24 MVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLY 220
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI) HSP 1 Score: 140 bits (353), Expect = 9.970e-38 Identity = 73/168 (43.45%), Postives = 111/168 (66.07%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIV 504
++ +CWA T L+K++KF EL ASNMLA+TNLAICVNLALI+ HR +SRV++ +P L+++FL S+ SVP W ++++G+ V W++ + + +EF GI M+ I ++L ++R E+ + WK+H RIR+YFGLTLIA NL + + GT+ V
Sbjct: 99 MVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYV 266
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 117 bits (293), Expect = 8.300e-30 Identity = 66/174 (37.93%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 1 VLKMCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSR-VKNLGSPKLMMMFLTFSIMATVTSVPLWDTLMITGSHVLVVGSSTGETTWVIFSQYSLEFIAGIVMVGIAIFLAVYRLPEMIEVWKLHRRIRFYFGLTLIAILNNLCVAVGGTLIVFDQCE 519
++ +CW + L+K+ KF+EL + NMLA+TNLAIC+NLAL++ H + V +L SP L+++ L SI A + P W+ ++++G+ + + W+ S++ LEF GI M I +L ++R+ E+ E WK+H RIR+YFGLTLIA NL + + G + + E
Sbjct: 5 MISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDRE 178 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15707.3719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15707.3719.1 >prot_H-elongata_contig15707.3719.1 ID=prot_H-elongata_contig15707.3719.1|Name=mRNA_H-elongata_contig15707.3719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp MCWAQSRTTGLVKSIKFVELVASNMLAVTNLAICVNLALIIYGHRNVSRVback to top mRNA from alignment at H-elongata_contig15707:1538..4593+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15707.3719.1 ID=mRNA_H-elongata_contig15707.3719.1|Name=mRNA_H-elongata_contig15707.3719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3056bp|location=Sequence derived from alignment at H-elongata_contig15707:1538..4593+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15707:1538..4593+ >mRNA_H-elongata_contig15707.3719.1 ID=mRNA_H-elongata_contig15707.3719.1|Name=mRNA_H-elongata_contig15707.3719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig15707:1538..4593+ (Himanthalia elongata Himel1 dioecious)back to top |