mRNA_H-elongata_contig15700.3712.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15700.3712.1
Unique NamemRNA_H-elongata_contig15700.3712.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15700.3712.1 vs. uniprot
Match: A0A6H5L6Q9_9PHAE (Protein xylosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6Q9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.680e-18
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 2 
Query:   98 SSSPQQARVGYLIMASGLDELDKTKRLLEAIYDANNTYLVHLDRKNDASIRADFEDFISAW 280
            S+  ++AR+GYLIM+SG +EL KTKRLL+AIYD NN YLVHLDRK+  SIR DFE+FI  W
Sbjct:  168 STQEKRARIGYLIMSSGTEELHKTKRLLKAIYDPNNFYLVHLDRKDKHSIRRDFENFIEEW 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15700.3712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6Q9_9PHAE5.680e-1867.21Protein xylosyltransferase n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15700contigH-elongata_contig15700:6511..6961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.2e-15
Seed eggNOG ortholog2880.D7FMI2
Preferred nameXYLT2
KEGG koko:K00771
KEGG ReactionR05925
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
GOsGO:0000003,GO:0000139,GO:0002009,GO:0002119,GO:0002164,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006793,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0007610,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009791,GO:0009888,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016763,GO:0018991,GO:0019098,GO:0019321,GO:0019538,GO:0022008,GO:0022414,GO:0030154,GO:0030158,GO:0030166,GO:0030201,GO:0030202,GO:0030203,GO:0030204,GO:0030206,GO:0030210,GO:0031090,GO:0031224,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032504,GO:0033319,GO:0033554,GO:0034097,GO:0034605,GO:0034641,GO:0034645,GO:0035252,GO:0040025,GO:0042221,GO:0042285,GO:0042732,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048569,GO:0048583,GO:0048585,GO:0048609,GO:0048679,GO:0048681,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051716,GO:0051960,GO:0051961,GO:0055086,GO:0060284,GO:0060429,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:0140096,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:1903510,GO:2000026
EggNOG free text desc.acetylglucosaminyltransferase activity
EggNOG OGsKOG0799@1,KOG0799@2759
EC2.4.2.26
COG Functional cat.O
CAZyGT14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15700.3712.1prot_H-elongata_contig15700.3712.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15700 6518..6961 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.8226564-UTR-H-elongata_contig15700:6510..65171622929926.8226564-UTR-H-elongata_contig15700:6510..6517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15700 6511..6517 +
1691679210.997325-UTR-H-elongata_contig15700:6510..65171691679210.997325-UTR-H-elongata_contig15700:6510..6517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15700 6511..6517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.3023903-CDS-H-elongata_contig15700:6517..66941622929927.3023903-CDS-H-elongata_contig15700:6517..6694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 6518..6694 +
1691679211.009936-CDS-H-elongata_contig15700:6517..66941691679211.009936-CDS-H-elongata_contig15700:6517..6694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 6518..6694 +
1622929927.3209457-CDS-H-elongata_contig15700:6865..69611622929927.3209457-CDS-H-elongata_contig15700:6865..6961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 6866..6961 +
1691679211.019348-CDS-H-elongata_contig15700:6865..69611691679211.019348-CDS-H-elongata_contig15700:6865..6961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15700 6866..6961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15700.3712.1

>prot_H-elongata_contig15700.3712.1 ID=prot_H-elongata_contig15700.3712.1|Name=mRNA_H-elongata_contig15700.3712.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MSDEGMLTSRKPWTVTSNRILKGKTEVLTSSSSPQQARVGYLIMASGLDE
LDKTKRLLEAIYDANNTYLVHLDRKNDASIRADFEDFISAW
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mRNA from alignment at H-elongata_contig15700:6511..6961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15700.3712.1 ID=mRNA_H-elongata_contig15700.3712.1|Name=mRNA_H-elongata_contig15700.3712.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=451bp|location=Sequence derived from alignment at H-elongata_contig15700:6511..6961+ (Himanthalia elongata Himel1 dioecious)
GACATCAATGTCGGACGAGGGAATGTTGACGTCTCGGAAGCCTTGGACAG
TGACATCTAATCGTATCTTGAAGGGGAAGACAGAGGTGTTGACGTCATCG
TCATCGCCTCAGCAGGCTCGAGTTGGGTACTTGATAATGGCCAGTGGCCT
CGACGAGCTGGACAAAACTAAGAGGCTGCTTGAGGTGCGTTTTTGCCCAA
GCTTTGCTACAACAAAGCGCCGAAGTCGAAGCGTCGCCTGTATGTCTTAA
AAAATTGCAATTAAGATGTTCGATAACTACGACCGAAAAAATGCTTAAGG
ACTTTTGTTTCTCGCACTTAGCTCGATGCTGTCCTCGCTCGGGCTGCTGC
GACAGGCCATCTACGACGCCAACAACACCTATTTGGTGCACTTAGACCGC
AAAAATGACGCATCCATAAGGGCAGATTTTGAAGACTTCATTAGTGCTTG
G
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Coding sequence (CDS) from alignment at H-elongata_contig15700:6511..6961+

>mRNA_H-elongata_contig15700.3712.1 ID=mRNA_H-elongata_contig15700.3712.1|Name=mRNA_H-elongata_contig15700.3712.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig15700:6511..6961+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGACGAGGGAATGTTGACGTCTCGGAAGCCTTGGACAGTGACATC
TAATCGTATCTTGAAGGGGAAGACAGAGGTGTTGACGTCATCGTCATCGC
CTCAGCAGGCTCGAGTTGGGTACTTGATAATGGCCAGTGGCCTCGACGAG
CTGGACAAAACTAAGAGGCTGCTTGAGATGTCGGACGAGGGAATGTTGAC
GTCTCGGAAGCCTTGGACAGTGACATCTAATCGTATCTTGAAGGGGAAGA
CAGAGGTGTTGACGTCATCGTCATCGCCTCAGCAGGCTCGAGTTGGGTAC
TTGATAATGGCCAGTGGCCTCGACGAGCTGGACAAAACTAAGAGGCTGCT
TGAGGCCATCTACGACGCCAACAACACCTATTTGGTGCACTTAGACCGCA
AAAATGACGCATCCATAAGGGCAGATTTTGAAGACTTCATTAGTGCTTGG
GCCATCTACGACGCCAACAACACCTATTTGGTGCACTTAGACCGCAAAAA
TGACGCATCCATAAGGGCAGATTTTGAAGACTTCATTAGTGCTTGG
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