mRNA_H-elongata_contig156830.3707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156830.3707.1
Unique NamemRNA_H-elongata_contig156830.3707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.570e-16
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    4 AQMALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAVEKASSSG---------GGGEGVKATA--AVGTALLMWFFEDQVRAR 222
            AQMALEALKDLFITNLLP  R+LVPFE+RPL Q   +V +  + G         GGG GV +    A G ALLMW++EDQ+  R
Sbjct:  310 AQMALEALKDLFITNLLPDSRKLVPFETRPLLQALASVTEEGNKGQGGGGDSVPGGGRGVNSPGGKAAGKALLMWYYEDQILNR 393
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BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: A0A6H5L5C9_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-13
Identity = 45/76 (59.21%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    4 AQMALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAV--EKASSSGGGGEGVKATA---------AVGTALLMWF 198
            AQMALEALKDLFITNLLP  R+LVPFESRPL Q   +V  E     GGGGE V             A G ALLMWF
Sbjct:   99 AQMALEALKDLFITNLLPDSRKLVPFESRPLLQALASVTEEGNKGQGGGGESVPEGGRGVNGPRGKAAGKALLMWF 174
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BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.920e-7
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:    4 AQMALEALKDLFITNLLPSGRRLVPFESRPLFQVF----NAVEKASSSGGGGEGVKATAAVGTALLMWFFEDQVRAR 222
            AQMA EALKDLFI++LLP  RRLVPF  RPL Q      N  E+A+ +                LLMW+FE ++  R
Sbjct:  282 AQMAQEALKDLFISDLLPDERRLVPFRERPLLQFEEWAPNFKEQAAKT----------------LLMWYFEGELLRR 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156830.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI1.570e-1654.76CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5C9_9PHAE1.500e-1359.21Reverse transcriptase domain-containing protein n=... [more]
A0A835ZC94_9STRA1.920e-745.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156830contigH-elongata_contig156830:955..1176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.2667668-CDS-H-elongata_contig156830:954..11671622929926.2667668-CDS-H-elongata_contig156830:954..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156830 955..1167 -
1691679210.7048848-CDS-H-elongata_contig156830:954..11671691679210.7048848-CDS-H-elongata_contig156830:954..1167Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156830 955..1167 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.2819161-UTR-H-elongata_contig156830:1167..11761622929926.2819161-UTR-H-elongata_contig156830:1167..1176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156830 1168..1176 -
1691679210.7193296-UTR-H-elongata_contig156830:1167..11761691679210.7193296-UTR-H-elongata_contig156830:1167..1176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig156830 1168..1176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156830.3707.1prot_H-elongata_contig156830.3707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156830 955..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156830.3707.1

>prot_H-elongata_contig156830.3707.1 ID=prot_H-elongata_contig156830.3707.1|Name=mRNA_H-elongata_contig156830.3707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MALEALKDLFITNLLPSGRRLVPFESRPLFQVFNAVEKASSSGGGGEGVK
ATAAVGTALLMWFFEDQVRAR
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mRNA from alignment at H-elongata_contig156830:955..1176-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156830.3707.1 ID=mRNA_H-elongata_contig156830.3707.1|Name=mRNA_H-elongata_contig156830.3707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig156830:955..1176- (Himanthalia elongata Himel1 dioecious)
CAGGCCCAGATGGCCCTGGAGGCCCTGAAAGATTTATTCATCACGAACCT
GTTGCCGAGCGGGAGAAGGCTTGTTCCGTTCGAGTCGAGGCCTCTATTTC
AAGTTTTTAATGCGGTGGAGAAGGCGTCTTCTTCAGGGGGAGGGGGAGAA
GGAGTAAAGGCGACGGCGGCGGTGGGAACCGCGTTGCTGATGTGGTTCTT
CGAGGACCAGGTTCGCGCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig156830:955..1176-

>mRNA_H-elongata_contig156830.3707.1 ID=mRNA_H-elongata_contig156830.3707.1|Name=mRNA_H-elongata_contig156830.3707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig156830:955..1176- (Himanthalia elongata Himel1 dioecious)
ATGGCCCTGGAGGCCCTGAAAGATTTATTCATCACGAACCTGTTGCCGAG
CGGGAGAAGGCTTGTTCCGTTCGAGTCGAGGCCTCTATTTCAAGTTTTTA
ATGCGGTGGAGAAGGCGTCTTCTTCAGGGGGAGGGGGAGAAGGAGTAAAG
GCGACGGCGGCGGTGGGAACCGCGTTGCTGATGTGGTTCTTCGAGGACCA
GGTTCGCGCGCGGATGGCCCTGGAGGCCCTGAAAGATTTATTCATCACGA
ACCTGTTGCCGAGCGGGAGAAGGCTTGTTCCGTTCGAGTCGAGGCCTCTA
TTTCAAGTTTTTAATGCGGTGGAGAAGGCGTCTTCTTCAGGGGGAGGGGG
AGAAGGAGTAAAGGCGACGGCGGCGGTGGGAACCGCGTTGCTGATGTGGT
TCTTCGAGGACCAGGTTCGCGCGCGG
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