mRNA_H-elongata_contig156792.3702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156792.3702.1
Unique NamemRNA_H-elongata_contig156792.3702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.460e-30
Identity = 95/192 (49.48%), Postives = 122/192 (63.54%), Query Frame = 1 
Query:    4 FSNLGGYGSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIALLSRKDKSSMGXXXXXXXXXXXXXXXXXXXXXXXXSRVGGFMAA-------ARLAGRAPTQQVGRGADDSTTSLIINSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSS 558
            F N  G G NIL Y E  RR+P GFKP QV+ATAL+PRTK+ YGV ++E A+VWK + EEAVKIA+ +R  ++S         XXXXXXXXXXXXXXXXX                A+  G A T Q+  GAD S   LI +SVR E+ A++ + G+K+ EE K G   + +YLDPL++WRVR AD  HL++
Sbjct:   51 FINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADVWKLVEEEAVKIAVETRNSENSQRASSQQGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQAVGGARTPQLDEGADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEG---AKVYLDPLDWWRVRCADFPHLAN 239
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-17
Identity = 61/186 (32.80%), Postives = 88/186 (47.31%), Query Frame = 1 
Query:    4 FSNLGGYGSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIALLS-RKDKSSMGXXXXXXXXXXXXXXXXXXXXXXXXSRVGGFMAAARLAGRAPTQQVGRGADDSTTSLIINSVRPEVEAYQAAPGMKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSS 558
            F N  G GS+IL Y E  RR+P+GFK +QV ATA++PR K  YG++  EHA+VW+ +  +AV IA      D ++                          +R+  F AAA     A     G    D     + + V  EV ++Q  PG+ I   G  G     +Y DPL++WR R  +  HL++
Sbjct:  349 FLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASVWRAVATKAVDIAAEKFSSDNTATSGSAPAAQPVGTPPVAPGGQGAPKRARLSAFEAAAAAHAGAAASSAGGQTLDEKREQLASVVDLEVASFQTTPGISIWYWGTDGKK---VYNDPLDWWRTRQMEFPHLAA 531
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-14
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   19 GYGSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIALLSRKDKSS 225
            G G NIL Y E  RR+P GFKP  V+ATAL+PRTK+PYGV ++E A+VWK + EEAVKIA+ +R  ++S
Sbjct:  255 GDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADVWKLVQEEAVKIAVETRNAENS 323
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.640e-13
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    4 FSNLGGYGSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEE-AVKIALLSRKDKSS 225
            F N  G G NIL Y E  RR+P GFKP QV+ATAL+PRTK+ +GV ++E A+VWK + EE AVKIA+ +R  ++S
Sbjct:  173 FINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADVWKLVQEEEAVKIAVETRNAENS 247
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.720e-12
Identity = 34/71 (47.89%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   25 GSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIALLSR--KDKSSMG 231
            G+++L Y E  RR+PRGFK +QV+ATAL+PR+K  YG+++ EH++VW+ +  EAVK+A+ ++  +D  S G
Sbjct:  256 GTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAG 326
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BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.690e-10
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   28 SNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIAL 201
            +++L Y E  RR+PRGFK EQV+ATAL PR+K  YG+++ EH++VW     EAVK+A+
Sbjct:  285 TDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDVWDAGANEAVKVAI 342
[Close]
BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.920e-7
Identity = 28/58 (48.28%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   64 KPRGFKPEQVVATALNPRTKMPYGVKDNEHANVWKRLHEEAVKIALLSR--KDKSSMG 231
            +PRGFK +QV+ATAL+PR+K  YG+++ EH++VW+ +  EAVK+A+ ++  +D  S G
Sbjct:  325 EPRGFKKKQVLATALDPRSKSLYGIEETEHSDVWEAVANEAVKVAIEAKATEDTQSAG 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156792.3702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.460e-3049.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE1.090e-1732.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE1.060e-1459.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE4.640e-1356.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE6.720e-1247.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE2.690e-1053.45Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JJV8_9PHAE1.920e-748.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156792contigH-elongata_contig156792:329..888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.395085-CDS-H-elongata_contig156792:328..8861622929925.395085-CDS-H-elongata_contig156792:328..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156792 329..886 +
1691679210.503075-CDS-H-elongata_contig156792:328..8861691679210.503075-CDS-H-elongata_contig156792:328..886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156792 329..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156792.3702.1prot_H-elongata_contig156792.3702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156792 329..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156792.3702.1

>prot_H-elongata_contig156792.3702.1 ID=prot_H-elongata_contig156792.3702.1|Name=mRNA_H-elongata_contig156792.3702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
GFSNLGGYGSNILTYAERNRRKPRGFKPEQVVATALNPRTKMPYGVKDNE
HANVWKRLHEEAVKIALLSRKDKSSMGGSSQQPATAAPSGAASGGSSSKK
RSRVGGFMAAARLAGRAPTQQVGRGADDSTTSLIINSVRPEVEAYQAAPG
MKINEEGKVGNASSWMYLDPLEFWRVRTADSLHLSS
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mRNA from alignment at H-elongata_contig156792:329..888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156792.3702.1 ID=mRNA_H-elongata_contig156792.3702.1|Name=mRNA_H-elongata_contig156792.3702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=560bp|location=Sequence derived from alignment at H-elongata_contig156792:329..888+ (Himanthalia elongata Himel1 dioecious)
GGTTTTTCCAACCTGGGGGGATACGGAAGCAACATCCTGACTTACGCGGA
AAGAAACAGGAGGAAACCACGCGGCTTCAAGCCTGAGCAGGTGGTTGCAA
CCGCTCTCAACCCGCGTACCAAGATGCCATACGGGGTCAAAGACAACGAG
CACGCCAATGTTTGGAAGCGCTTGCATGAGGAGGCAGTCAAGATCGCGCT
GCTAAGCCGCAAAGACAAGAGTTCTATGGGCGGTTCGTCGCAGCAACCAG
CGACAGCAGCACCTTCCGGGGCCGCTAGTGGAGGTTCCTCGTCAAAGAAG
CGCTCGCGTGTTGGTGGGTTCATGGCGGCTGCGCGATTGGCAGGACGTGC
ACCTACCCAGCAGGTTGGTAGAGGCGCCGATGACTCAACGACCAGCCTTA
TCATCAACTCGGTAAGGCCGGAGGTGGAGGCCTACCAGGCGGCCCCAGGC
ATGAAGATAAACGAGGAGGGGAAAGTTGGCAACGCGAGCTCTTGGATGTA
TCTGGACCCCTTGGAATTTTGGCGGGTAAGGACCGCGGACTCCCTGCATT
TGTCCAGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig156792:329..888+

>mRNA_H-elongata_contig156792.3702.1 ID=mRNA_H-elongata_contig156792.3702.1|Name=mRNA_H-elongata_contig156792.3702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig156792:329..888+ (Himanthalia elongata Himel1 dioecious)
GGTTTTTCCAACCTGGGGGGATACGGAAGCAACATCCTGACTTACGCGGA
AAGAAACAGGAGGAAACCACGCGGCTTCAAGCCTGAGCAGGTGGTTGCAA
CCGCTCTCAACCCGCGTACCAAGATGCCATACGGGGTCAAAGACAACGAG
CACGCCAATGTTTGGAAGCGCTTGCATGAGGAGGCAGTCAAGATCGCGCT
GCTAAGCCGCAAAGACAAGAGTTCTATGGGCGGTTCGTCGCAGCAACCAG
CGACAGCAGCACCTTCCGGGGCCGCTAGTGGAGGTTCCTCGTCAAAGAAG
CGCTCGCGTGTTGGTGGGTTCATGGCGGCTGCGCGATTGGCAGGACGTGC
ACCTACCCAGCAGGTTGGTAGAGGCGCCGATGACTCAACGACCAGCCTTA
TCATCAACTCGGTAAGGCCGGAGGTGGAGGCCTACCAGGCGGCCCCAGGC
ATGAAGATAAACGAGGAGGGGAAAGTTGGCAACGCGAGCTCTTGGATGTA
TCTGGACCCCTTGGAATTTTGGCGGGTAAGGACCGCGGACTCCCTGCATT
TGTCCAGTGGTTTTTCCAACCTGGGGGGATACGGAAGCAACATCCTGACT
TACGCGGAAAGAAACAGGAGGAAACCACGCGGCTTCAAGCCTGAGCAGGT
GGTTGCAACCGCTCTCAACCCGCGTACCAAGATGCCATACGGGGTCAAAG
ACAACGAGCACGCCAATGTTTGGAAGCGCTTGCATGAGGAGGCAGTCAAG
ATCGCGCTGCTAAGCCGCAAAGACAAGAGTTCTATGGGCGGTTCGTCGCA
GCAACCAGCGACAGCAGCACCTTCCGGGGCCGCTAGTGGAGGTTCCTCGT
CAAAGAAGCGCTCGCGTGTTGGTGGGTTCATGGCGGCTGCGCGATTGGCA
GGACGTGCACCTACCCAGCAGGTTGGTAGAGGCGCCGATGACTCAACGAC
CAGCCTTATCATCAACTCGGTAAGGCCGGAGGTGGAGGCCTACCAGGCGG
CCCCAGGCATGAAGATAAACGAGGAGGGGAAAGTTGGCAACGCGAGCTCT
TGGATGTATCTGGACCCCTTGGAATTTTGGCGGGTAAGGACCGCGGACTC
CCTGCATTTGTCCAGT
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