mRNA_H-elongata_contig156779.3701.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156779.3701.1
Unique NamemRNA_H-elongata_contig156779.3701.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Match: D7FIE4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.200e-45
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:    1 QVPTLTRLG-ELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGIARYDQEADGARRWVEGAWVLGALGAMCLFIGASVPGDGEDSFSLQGIAHAAFFVAAGLGMIGQAICTVRAILKARCVVV 387
            ++PTLT+LG   +PVG  F AG+ LAAV A+PLFWCV+LAHHQRLQARTG+ARYD EA+GA RWV GAW+ GALGAM ++  ASVPG+   SFS QG+ H     +A  G++GQA+CT  A+ KAR V V
Sbjct:   66 RIPTLTQLGMRNNPVGFTFRAGIQLAAVVAVPLFWCVKLAHHQRLQARTGVARYDIEAEGAIRWVSGAWITGALGAMLMYAAASVPGEEGASFSPQGVTHLVLTTSAACGILGQAVCTAWALRKARLVFV 195
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BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Match: A0A835YPN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.600e-14
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 QVPTLTRLGELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGIARYDQEADGARRWVEGAWVLGALGAMCLFIGASVP 255
            ++PT++RLG   P   VF  G+HL A+  + L W VRLAH QRL+ARTG+ +YD     ARR  + A  +G   +   F+  SVP
Sbjct:   62 RLPTVSRLGAYPPGCYVFAGGMHLGAIVFMLLVWAVRLAHTQRLRARTGLEKYDSRGAAARRCADAACAVGTAFSALWFLAGSVP 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156779.3701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE4_ECTSI5.200e-4560.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPN4_9STRA6.600e-1443.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156779contigH-elongata_contig156779:15..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_001590.1
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.336608-CDS-H-elongata_contig156779:14..3301622929925.336608-CDS-H-elongata_contig156779:14..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156779 15..330 -
1691679210.480607-CDS-H-elongata_contig156779:14..3301691679210.480607-CDS-H-elongata_contig156779:14..330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156779 15..330 -
1622929925.3520923-CDS-H-elongata_contig156779:742..8431622929925.3520923-CDS-H-elongata_contig156779:742..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156779 743..843 -
1691679210.4897974-CDS-H-elongata_contig156779:742..8431691679210.4897974-CDS-H-elongata_contig156779:742..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156779 743..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156779.3701.1prot_H-elongata_contig156779.3701.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156779 15..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156779.3701.1

>prot_H-elongata_contig156779.3701.1 ID=prot_H-elongata_contig156779.3701.1|Name=mRNA_H-elongata_contig156779.3701.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
QVPTLTRLGELSPVGEVFTAGLHLAAVCALPLFWCVRLAHHQRLQARTGI
ARYDQEADGARRWVEGAWVLGALGAMCLFIGASVPGDGEDSFSLQGIAHA
AFFVAAGLGMIGQAICTVRAILKARCVVVLFLFLSLSC*
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mRNA from alignment at H-elongata_contig156779:15..843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156779.3701.1 ID=mRNA_H-elongata_contig156779.3701.1|Name=mRNA_H-elongata_contig156779.3701.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig156779:15..843- (Himanthalia elongata Himel1 dioecious)
CAGGTCCCCACGCTGACTCGGCTCGGCGAGCTTAGTCCCGTCGGAGAGGT
CTTCACGGCAGGCTTGCATCTCGCCGCGGTGTGCGCCTTGCCCCTGTTCT
GGTGAGCGAGGTTCTTGCGAATCGATCGGACGGCGGGAGCGAAATGCGTT
TTCTACTGCTTGTTCAGTCAAGTCATACGAGATAATCTCCCGTACTTCGT
TGGAACTACAGTTTACCCTCTAGGCTATACACTTTTGCCGTCATAGTCCC
CCGCATGATTAATAATAATATTAAGTGTACGGTATAATGATTGGATATAT
CCCCAACATTAAACCGTCGACCCGATGAAACTCCTATTGGGGAACATGAT
TAATCACACGTGACGATCTTATGTTCAAATGTAGTGATTGTACGCATTCG
AACCTGACGATAGTTTTGGTCCCCCGGACTGCACCTCTCTCACGGTGCTA
AGAAGGCGTGGATATTCGGAGGGTTGAAATTTGTTTATATGTTTTTTTTT
GAACCACCCCAAGGTGTGTACGACTGGCCCATCACCAGCGGCTGCAAGCC
CGAACGGGAATCGCGCGTTACGACCAAGAGGCCGACGGCGCGAGACGGTG
GGTGGAGGGCGCCTGGGTCTTGGGCGCACTGGGGGCCATGTGCCTGTTCA
TCGGCGCCAGCGTTCCTGGGGACGGCGAGGACTCTTTTTCGTTGCAGGGC
ATCGCCCACGCGGCGTTTTTTGTCGCAGCGGGGCTCGGGATGATAGGACA
AGCGATCTGCACGGTGCGCGCTATTCTCAAGGCCAGGTGCGTCGTCGTCC
TCTTCCTCTTTCTCTCTTTGTCATGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig156779:15..843-

>mRNA_H-elongata_contig156779.3701.1 ID=mRNA_H-elongata_contig156779.3701.1|Name=mRNA_H-elongata_contig156779.3701.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig156779:15..843- (Himanthalia elongata Himel1 dioecious)
CAGGTCCCCACGCTGACTCGGCTCGGCGAGCTTAGTCCCGTCGGAGAGGT
CTTCACGGCAGGCTTGCATCTCGCCGCGGTGTGCGCCTTGCCCCTGTTCT
GCAGGTCCCCACGCTGACTCGGCTCGGCGAGCTTAGTCCCGTCGGAGAGG
TCTTCACGGCAGGCTTGCATCTCGCCGCGGTGTGCGCCTTGCCCCTGTTC
TGGTGTGTACGACTGGCCCATCACCAGCGGCTGCAAGCCCGAACGGGAAT
CGCGCGTTACGACCAAGAGGCCGACGGCGCGAGACGGTGGGTGGAGGGCG
CCTGGGTCTTGGGCGCACTGGGGGCCATGTGCCTGTTCATCGGCGCCAGC
GTTCCTGGGGACGGCGAGGACTCTTTTTCGTTGCAGGGCATCGCCCACGC
GGCGTTTTTTGTCGCAGCGGGGCTCGGGATGATAGGACAAGCGATCTGCA
CGGTGCGCGCTATTCTCAAGGCCAGGTGCGTCGTCGTCCTCTTCCTCTTT
CTCTCTTTGTCATGCTAGGTGTGTACGACTGGCCCATCACCAGCGGCTGC
AAGCCCGAACGGGAATCGCGCGTTACGACCAAGAGGCCGACGGCGCGAGA
CGGTGGGTGGAGGGCGCCTGGGTCTTGGGCGCACTGGGGGCCATGTGCCT
GTTCATCGGCGCCAGCGTTCCTGGGGACGGCGAGGACTCTTTTTCGTTGC
AGGGCATCGCCCACGCGGCGTTTTTTGTCGCAGCGGGGCTCGGGATGATA
GGACAAGCGATCTGCACGGTGCGCGCTATTCTCAAGGCCAGGTGCGTCGT
CGTCCTCTTCCTCTTTCTCTCTTTGTCATGCTAG
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