mRNA_H-elongata_contig156759.3699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156759.3699.1
Unique NamemRNA_H-elongata_contig156759.3699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 RWKRQRQQIKRDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            +WKRQR Q KR KLRDVINA++RKYDGVLNYYQG+HDVV+ LLLVT +  L++ L ERVS YFFR
Sbjct:  197 KWKRQRLQSKRKKLRDVINAVVRKYDGVLNYYQGFHDVVSVLLLVTSNTELTFALTERVSHYFFR 261
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A7S2FD21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD21_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.260e-6
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   28 KRDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            +RDKL  +I  ++ ++ G L Y+QG+HDVV+ LLLV  +      LAE++++++ R
Sbjct:   72 RRDKLAYIIQTVLGRHQGELFYFQGFHDVVSILLLVAAETAQVTALAEKLALFYLR 127
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A151Z8D0_9MYCE (RabGAP/TBC domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z8D0_9MYCE)

HSP 1 Score: 51.2 bits (121), Expect = 7.780e-6
Identity = 24/56 (42.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   28 KRDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            K+ +L +++NAI+  +   L+Y+QGYH++ + LLLVT D++L++ + ER+S+Y FR
Sbjct:   99 KKPELMNIVNAILSIHKE-LHYFQGYHEIGSVLLLVT-DESLAFAMLERLSLYHFR 152
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: U5H5U1_USTV1 (Rab-GAP TBC domain-containing protein n=3 Tax=Microbotryum TaxID=34416 RepID=U5H5U1_USTV1)

HSP 1 Score: 50.1 bits (118), Expect = 2.020e-5
Identity = 22/55 (40.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   31 RDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            RD+L +VI  ++R++   L+Y+QGYHD+++ LLL  +D+ L+   AE++S++  R
Sbjct:  175 RDQLENVIVTVLRRHPS-LHYFQGYHDIISILLLTFKDEELTIQAAEKMSLHRLR 228
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A1Y2G3W1_9BASI (Rab-GTPase-TBC domain-domain-containing protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G3W1_9BASI)

HSP 1 Score: 49.3 bits (116), Expect = 3.780e-5
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   22 QIKRDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            ++ R KL  VI   +R++   L Y+QGYHD+++ LLL  ED+  S   AER+S++  R
Sbjct:  153 EVLRTKLETVIVTTLRRHPS-LQYFQGYHDIISVLLLTLEDEQTSLDAAERMSLHRLR 209
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A238F306_9BASI (BQ2448_5048 protein n=1 Tax=Microbotryum intermedium TaxID=269621 RepID=A0A238F306_9BASI)

HSP 1 Score: 49.3 bits (116), Expect = 3.780e-5
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   31 RDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            RD+L +VI  I+R++   L+Y+QGYHD+++ LLL  +D+ L+   AE +S++  R
Sbjct:  142 RDQLENVIVTILRRHPS-LHYFQGYHDIISILLLTFKDEDLTIQAAEMMSLHRLR 195
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A511KAX7_RHOTO (GTPase-activating protein gyp10 n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KAX7_RHOTO)

HSP 1 Score: 49.3 bits (116), Expect = 3.800e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   31 RDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            R +L   I  ++R++   L Y+QGYHD+++ LLLV +DD L    AER+S++  R
Sbjct:  137 RQRLETAILTVLRRHPA-LQYFQGYHDIISILLLVLDDDQLLLETAERLSLHQIR 190
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BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: UPI001F044E5D (TBC1 domain family member 20-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044E5D)

HSP 1 Score: 48.5 bits (114), Expect = 7.010e-5
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   43 RDVINAIIRKY--DGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            R VIN I+R       L+YYQGYHD+  TLLLV  +D L+ +L E++S+++ R
Sbjct:  192 RQVINIIMRVLCRHPDLHYYQGYHDIAVTLLLVNGED-LATVLLEKISLHYLR 243
[Close]
BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Match: A0A2S5B4Q8_9BASI (Rab-GAP TBC domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5B4Q8_9BASI)

HSP 1 Score: 48.1 bits (113), Expect = 9.760e-5
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   31 RDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDTLSYILAERVSIYFFR 195
            R KL   I  ++R++   L+Y+QGYHD+V+ LLL  E+D L    AE++S++  R
Sbjct:  150 RVKLEHAILTVLRRHPA-LHYFQGYHDIVSVLLLTLEEDDLVTAAAEKLSLHVVR 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156759.3699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQF1_9PHAE1.080e-2272.31Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2FD21_9STRA2.260e-639.29Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A151Z8D0_9MYCE7.780e-642.86RabGAP/TBC domain-containing protein n=1 Tax=Tiegh... [more]
U5H5U1_USTV12.020e-540.00Rab-GAP TBC domain-containing protein n=3 Tax=Micr... [more]
A0A1Y2G3W1_9BASI3.780e-541.38Rab-GTPase-TBC domain-domain-containing protein n=... [more]
A0A238F306_9BASI3.780e-541.82BQ2448_5048 protein n=1 Tax=Microbotryum intermedi... [more]
A0A511KAX7_RHOTO3.800e-541.82GTPase-activating protein gyp10 n=1 Tax=Rhodospori... [more]
UPI001F044E5D7.010e-547.17TBC1 domain family member 20-like isoform X1 n=2 T... [more]
A0A2S5B4Q8_9BASI9.760e-541.82Rab-GAP TBC domain-containing protein n=1 Tax=Rhod... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156759contigH-elongata_contig156759:182..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929925.2033637-CDS-H-elongata_contig156759:181..2531622929925.2033637-CDS-H-elongata_contig156759:181..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156759 182..253 +
1691679210.4243376-CDS-H-elongata_contig156759:181..2531691679210.4243376-CDS-H-elongata_contig156759:181..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156759 182..253 +
1622929925.2175827-CDS-H-elongata_contig156759:1129..12551622929925.2175827-CDS-H-elongata_contig156759:1129..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156759 1130..1255 +
1691679210.432346-CDS-H-elongata_contig156759:1129..12551691679210.432346-CDS-H-elongata_contig156759:1129..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156759 1130..1255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156759.3699.1prot_H-elongata_contig156759.3699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156759 182..1255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156759.3699.1

>prot_H-elongata_contig156759.3699.1 ID=prot_H-elongata_contig156759.3699.1|Name=mRNA_H-elongata_contig156759.3699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RWKRQRQQIKRDKLRDVINAIIRKYDGVLNYYQGYHDVVTTLLLVTEDDT
LSYILAERVSIYFFR*
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mRNA from alignment at H-elongata_contig156759:182..1255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156759.3699.1 ID=mRNA_H-elongata_contig156759.3699.1|Name=mRNA_H-elongata_contig156759.3699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig156759:182..1255+ (Himanthalia elongata Himel1 dioecious)
AGGTGGAAACGACAACGGCAGCAAATCAAGCGTGACAAGCTGAGAGACGT
CATAAACGCTATCATACGAAAGGTGCGATTTCTTCCTCCCAATGGCCACT
GTCAGTGTCGAGACACGGTACCTTTTGTATGGCGCACATTTTTGCTATAC
CCCCCCCACGCACACATGCCTCTTTCACAGACAGTATCACTAACAGTCTC
CTCTATTAAATCGTGGGCTGCAACTAAGATAGCTCTTTGCCATTTCCATT
TCCATTCTATGCTCACCTTGTGGTTCGGGAAAAAAAAATGTTTCAACCTT
TTTTTTTTCCCCTCAAGGTGAGAGACGCGGTGAAAGAGTGAGCAGCTCGG
CTTGATTCCCTTTTGGTCGAAAGAGAGAGAGCATCCCTCTCCCTCTACCC
GCCTCCGGCAGTATCGTATCGTATCGTGCCGTATGTTATTTTATACTGTA
TTGTTTTATCTTTGCCAGGTCTATTTTTCTCTCTTTTTCTCTTTTTTTCT
CTTTTTTTCTTCTTTTTCTTCTTTTTCTCTCTCTCTCTCTCTTTTTCTCT
CTCTCTCTTTATTAATAGTATCTCTCTATTTCCACCTTCCTCCCCCGCCC
TTCTTTAATAGCAATCGACATTTAATTATATTTAATGTCTCCCCCGCATA
TCTCCACACTTGTAGCCCCTTACCCTTACCCTTATTCCATAAATATGTAC
CTTTTCGAGTGTGTTTGAACTACGTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTCATAGTCTCTCTCTCGTGAATCTCCCCTCCCGTTTGTCCACGC
CTCTTTATGTGTGCCTATTATAACAGTACGGTAACTCTCTCATGCTACTA
TATTTGTGTTATATATGCCCCTTTCCTGTCTCGACCTCGAATCTCAGCTG
CGCCATTTCATTTTATTTTATTTTATTTATTTTTGTCTCTGTCCGCAGTA
CGACGGAGTGCTGAACTACTATCAGGGCTACCATGATGTGGTGACCACTC
TCCTTCTCGTGACCGAAGACGACACTCTCAGCTACATCCTCGCCGAGAGA
GTAAGCATCTACTTCTTCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156759:182..1255+

>mRNA_H-elongata_contig156759.3699.1 ID=mRNA_H-elongata_contig156759.3699.1|Name=mRNA_H-elongata_contig156759.3699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig156759:182..1255+ (Himanthalia elongata Himel1 dioecious)
AGGTGGAAACGACAACGGCAGCAAATCAAGCGTGACAAGCTGAGAGACGT
CATAAACGCTATCATACGAAAGAGGTGGAAACGACAACGGCAGCAAATCA
AGCGTGACAAGCTGAGAGACGTCATAAACGCTATCATACGAAAGTACGAC
GGAGTGCTGAACTACTATCAGGGCTACCATGATGTGGTGACCACTCTCCT
TCTCGTGACCGAAGACGACACTCTCAGCTACATCCTCGCCGAGAGAGTAA
GCATCTACTTCTTCCGGTGATACGACGGAGTGCTGAACTACTATCAGGGC
TACCATGATGTGGTGACCACTCTCCTTCTCGTGACCGAAGACGACACTCT
CAGCTACATCCTCGCCGAGAGAGTAAGCATCTACTTCTTCCGGTGA
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