mRNA_H-elongata_contig15672.3697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15672.3697.1
Unique NamemRNA_H-elongata_contig15672.3697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15672.3697.1 vs. uniprot
Match: D7G3Y1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.740e-7
Identity = 50/86 (58.14%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  733 SSRRRSGWGSGRSYSSASSARGSSLSGFGGTIPSPVLEEEEGSSSSEGS------GTAGFRDERKPKKSRSRGFVKPVRIRKVVTK 972
            SSR RS WG  RS SS+SSARGSSL GFGG +PSPV E  EGS  S         G  G  D  K K + SRGFVKPVR+RKV++K
Sbjct:    5 SSRGRS-WG--RSNSSSSSARGSSL-GFGGLLPSPVPEGSEGSGGSXXXXXXXXXGGFGREDRPKAKNNNSRGFVKPVRVRKVMSK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15672.3697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y1_ECTSI5.740e-758.14Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15672contigH-elongata_contig15672:6572..7543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue7e-08
Seed eggNOG ortholog2880.D7G3Y1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size972
Cds size972
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929924.8953173-CDS-H-elongata_contig15672:6571..75431622929924.8953173-CDS-H-elongata_contig15672:6571..7543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15672 6572..7543 -
1691679210.3676322-CDS-H-elongata_contig15672:6571..75431691679210.3676322-CDS-H-elongata_contig15672:6571..7543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15672 6572..7543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15672.3697.1prot_H-elongata_contig15672.3697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15672 6572..7543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15672.3697.1

>prot_H-elongata_contig15672.3697.1 ID=prot_H-elongata_contig15672.3697.1|Name=mRNA_H-elongata_contig15672.3697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
SLSPAHGSSKISKRSASLDSPAVVKIAANEPPDSNFMTRRAERRAARDRE
RDRARREADEAAAQAAEESARAACARKATGGGGHVGGYRRAPARSRSLGC
ERIAGGERVDSGGDGEDGDDDGCRERRPQMSRPYPRPSEKMLTKPHRSKI
EEWEEKRKTGTASSRSDTANRYQRSQRGRGTRPGSEGGQPFDPATGPWPI
WTQHNAGTPGSRSGSSDTSSVSRGSSTSSSYSSSSYGSSVGSSSSSRRRS
GWGSGRSYSSASSARGSSLSGFGGTIPSPVLEEEEGSSSSEGSGTAGFRD
ERKPKKSRSRGFVKPVRIRKVVTK
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mRNA from alignment at H-elongata_contig15672:6572..7543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15672.3697.1 ID=mRNA_H-elongata_contig15672.3697.1|Name=mRNA_H-elongata_contig15672.3697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig15672:6572..7543- (Himanthalia elongata Himel1 dioecious)
TCTCTCTCCCCGGCCCACGGCTCTTCCAAGATCTCAAAGCGGTCGGCGTC
GTTGGACTCCCCTGCAGTGGTGAAGATCGCTGCGAACGAGCCCCCCGACT
CCAACTTCATGACCCGTAGAGCTGAACGGCGGGCGGCTCGTGATCGGGAA
CGGGACCGCGCACGCAGAGAGGCAGACGAGGCTGCTGCCCAGGCAGCAGA
GGAAAGCGCGCGGGCCGCTTGTGCGCGCAAGGCAACCGGCGGCGGTGGCC
ATGTCGGCGGCTATCGAAGGGCTCCGGCGCGCAGCCGTAGCCTCGGATGC
GAGCGAATCGCTGGCGGCGAGAGGGTGGACAGCGGTGGCGATGGCGAAGA
TGGTGATGATGATGGTTGCCGCGAAAGGCGCCCGCAGATGTCGAGGCCCT
ACCCCCGCCCGTCGGAGAAAATGTTGACTAAGCCGCACAGGTCCAAGATC
GAAGAGTGGGAGGAAAAGAGGAAGACAGGCACGGCAAGCAGCCGTTCGGA
CACGGCCAATCGCTACCAACGGAGTCAACGCGGCCGGGGGACGAGACCCG
GTAGCGAAGGTGGCCAGCCTTTCGACCCTGCCACCGGCCCGTGGCCGATA
TGGACGCAGCATAACGCCGGTACGCCTGGGAGCAGGAGCGGTTCGTCGGA
TACGAGCTCTGTAAGCCGGGGCTCATCGACATCGTCATCTTACAGTTCGA
GCTCCTACGGCTCATCTGTTGGGTCTTCGAGTTCCTCTCGGCGCAGGAGC
GGCTGGGGTTCCGGGAGGTCTTACAGTTCGGCGAGCAGCGCAAGAGGCAG
CAGCCTGAGCGGGTTCGGAGGCACGATACCGTCACCTGTACTTGAGGAAG
AAGAGGGCAGCAGCAGCAGTGAAGGAAGCGGAACGGCAGGCTTCCGCGAC
GAAAGGAAGCCCAAGAAGTCGAGGTCGCGCGGTTTCGTGAAGCCTGTGCG
CATTCGAAAGGTCGTCACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig15672:6572..7543-

>mRNA_H-elongata_contig15672.3697.1 ID=mRNA_H-elongata_contig15672.3697.1|Name=mRNA_H-elongata_contig15672.3697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig15672:6572..7543- (Himanthalia elongata Himel1 dioecious)
TCTCTCTCCCCGGCCCACGGCTCTTCCAAGATCTCAAAGCGGTCGGCGTC
GTTGGACTCCCCTGCAGTGGTGAAGATCGCTGCGAACGAGCCCCCCGACT
CCAACTTCATGACCCGTAGAGCTGAACGGCGGGCGGCTCGTGATCGGGAA
CGGGACCGCGCACGCAGAGAGGCAGACGAGGCTGCTGCCCAGGCAGCAGA
GGAAAGCGCGCGGGCCGCTTGTGCGCGCAAGGCAACCGGCGGCGGTGGCC
ATGTCGGCGGCTATCGAAGGGCTCCGGCGCGCAGCCGTAGCCTCGGATGC
GAGCGAATCGCTGGCGGCGAGAGGGTGGACAGCGGTGGCGATGGCGAAGA
TGGTGATGATGATGGTTGCCGCGAAAGGCGCCCGCAGATGTCGAGGCCCT
ACCCCCGCCCGTCGGAGAAAATGTTGACTAAGCCGCACAGGTCCAAGATC
GAAGAGTGGGAGGAAAAGAGGAAGACAGGCACGGCAAGCAGCCGTTCGGA
CACGGCCAATCGCTACCAACGGAGTCAACGCGGCCGGGGGACGAGACCCG
GTAGCGAAGGTGGCCAGCCTTTCGACCCTGCCACCGGCCCGTGGCCGATA
TGGACGCAGCATAACGCCGGTACGCCTGGGAGCAGGAGCGGTTCGTCGGA
TACGAGCTCTGTAAGCCGGGGCTCATCGACATCGTCATCTTACAGTTCGA
GCTCCTACGGCTCATCTGTTGGGTCTTCGAGTTCCTCTCGGCGCAGGAGC
GGCTGGGGTTCCGGGAGGTCTTACAGTTCGGCGAGCAGCGCAAGAGGCAG
CAGCCTGAGCGGGTTCGGAGGCACGATACCGTCACCTGTACTTGAGGAAG
AAGAGGGCAGCAGCAGCAGTGAAGGAAGCGGAACGGCAGGCTTCCGCGAC
GAAAGGAAGCCCAAGAAGTCGAGGTCGCGCGGTTTCGTGAAGCCTGTGCG
CATTCGAAAGGTCGTCACCAAGTCTCTCTCCCCGGCCCACGGCTCTTCCA
AGATCTCAAAGCGGTCGGCGTCGTTGGACTCCCCTGCAGTGGTGAAGATC
GCTGCGAACGAGCCCCCCGACTCCAACTTCATGACCCGTAGAGCTGAACG
GCGGGCGGCTCGTGATCGGGAACGGGACCGCGCACGCAGAGAGGCAGACG
AGGCTGCTGCCCAGGCAGCAGAGGAAAGCGCGCGGGCCGCTTGTGCGCGC
AAGGCAACCGGCGGCGGTGGCCATGTCGGCGGCTATCGAAGGGCTCCGGC
GCGCAGCCGTAGCCTCGGATGCGAGCGAATCGCTGGCGGCGAGAGGGTGG
ACAGCGGTGGCGATGGCGAAGATGGTGATGATGATGGTTGCCGCGAAAGG
CGCCCGCAGATGTCGAGGCCCTACCCCCGCCCGTCGGAGAAAATGTTGAC
TAAGCCGCACAGGTCCAAGATCGAAGAGTGGGAGGAAAAGAGGAAGACAG
GCACGGCAAGCAGCCGTTCGGACACGGCCAATCGCTACCAACGGAGTCAA
CGCGGCCGGGGGACGAGACCCGGTAGCGAAGGTGGCCAGCCTTTCGACCC
TGCCACCGGCCCGTGGCCGATATGGACGCAGCATAACGCCGGTACGCCTG
GGAGCAGGAGCGGTTCGTCGGATACGAGCTCTGTAAGCCGGGGCTCATCG
ACATCGTCATCTTACAGTTCGAGCTCCTACGGCTCATCTGTTGGGTCTTC
GAGTTCCTCTCGGCGCAGGAGCGGCTGGGGTTCCGGGAGGTCTTACAGTT
CGGCGAGCAGCGCAAGAGGCAGCAGCCTGAGCGGGTTCGGAGGCACGATA
CCGTCACCTGTACTTGAGGAAGAAGAGGGCAGCAGCAGCAGTGAAGGAAG
CGGAACGGCAGGCTTCCGCGACGAAAGGAAGCCCAAGAAGTCGAGGTCGC
GCGGTTTCGTGAAGCCTGTGCGCATTCGAAAGGTCGTCACCAAG
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