mRNA_H-elongata_contig15660.3690.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.880e-26 Identity = 76/180 (42.22%), Postives = 107/180 (59.44%), Query Frame = 1
Query: 1 DVISLQETRRSGHSAFTYAGYSVYCS-CECGRENGGKKGQGRVGLAVRTSVTRAVCPQ----KFINDHFLKVPLELRGRAKAVTCFVTYAPIE-AQNSSN-----KHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
DVI LQETRR+G A T+ GY + S G ++ K+G VG+A++ ++ +V + I+ +KV L++ GR VT V YAP E A+N++ K SFWT LD + E+ + L+VLMD NARTGRR + G D IMGAYGR +N+NGE LL A ++ L+L+N
Sbjct: 13 DVIGLQETRRAGQGAITHDGYVIIWSGARAGTKD--KRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRR---RDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLIN 186
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.360e-26 Identity = 63/168 (37.50%), Postives = 96/168 (57.14%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + F +G+ V+ CG + GG G VG+AV ++ ++ +++++ + + E+ G AVT YAP + + +KH FW LD + IP E L VLMD NA+TG G + ++ MG YGR LN+NGELLL+FA ++ LA++N
Sbjct: 342 VGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLN 499
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5L3X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.080e-26 Identity = 62/168 (36.90%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + FT +G+ V+ CG + GG G VG+AV ++ +A +++++ + + E+ G AV YAP + + +K FW LD + IP E + VLMD NA+TG G + ++ MG YGR LNDNG LLL+FA ++ LA++N
Sbjct: 141 VGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKECVFVLMDANAQTG----GGIAGENEGTMGEYGRNELNDNGRLLLTFATDNRLAVLN 298
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 110 bits (275), Expect = 9.120e-26 Identity = 72/180 (40.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 1 DVISLQETRRSGHSAFTYAGYSVYCS-CECGRENGGKKGQGRVGLAVRTSVTRAVCPQ----KFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSN------KHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
DVI LQETRR G + + GY + S G ++ K+G VG+A++ ++ +V + + I +KV L + GR +T V YAP E ++ K SFWT LD + E+ H+ L+VLMD NARTGRR + G D IMG YGR +N+NGE LL A+N+ L+L N
Sbjct: 183 DVIGLQETRREGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRR---RDGCCDAKIMGVYGRDIMNNNGERLLGLASNNQLSLTN 356
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.080e-25 Identity = 62/168 (36.90%), Postives = 95/168 (56.55%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + F +G+ V+ CG + GG G VG+AV ++ ++ +++++ + + E+ G AVT YAP + + +KH FW LD + P E L VLMD NA+TG G + ++ MG YGR LN+NGELLL+FA ++ LA++N
Sbjct: 55 VGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLN 212
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.120e-25 Identity = 62/168 (36.90%), Postives = 95/168 (56.55%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + F +G+ V+ CG + GG G VG+AV ++ ++ +++++ + + E+ G AVT YAP + + +KH FW LD + P E L VLMD NA+TG G + ++ MG YGR LN+NGELLL+FA ++ LA++N
Sbjct: 546 VGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFATDNRLAVLN 703
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.170e-25 Identity = 73/180 (40.56%), Postives = 106/180 (58.89%), Query Frame = 1
Query: 1 DVISLQETRRSGHSAFTYAGYSVYCS-CECGRENGGKKGQGRVGLAVRTSVTRAVCPQ----KFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSN------KHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
DVI LQETRR+G + + GY + S G ++ K+G VG+A++ ++ +V + + I+ +KV L++ GR VT V YAP E ++ K SFWT LD A+ E+ + L+VLMD NARTGRR +G +K IMGAYGR +N+NGE LL A+++ L+L N
Sbjct: 210 DVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKD--KRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDAK---IMGAYGRDIMNNNGERLLGLASDNQLSLTN 383
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.290e-25 Identity = 63/168 (37.50%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + FT +G+ V+ CG + GG G VG+AV ++ +A +++++ + + E+ G AV YAP + + +K FW LD + IP E L VLMD NA+TG G + ++ MG YGR LNDNG LLL+FA ++ LA++N
Sbjct: 80 VGLQEVRRPGRTEFTASGFRVFT---CGTDKGGTHG---VGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFATDNRLAVLN 237
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.330e-25 Identity = 62/168 (36.90%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE RR G + F +G+ V+ CG + GG G VG+AV ++ ++ +++++ + + E+ G AVT YAP + + +KH FW LD + P E L VLMD NA+TG G + ++ MG YGR LNDNG LLL+FA ++ LA++N
Sbjct: 110 VGLQEVRRPGRTEFAASGFRVFT---CGTDKGGTHG---VGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFATDNRLAVLN 267
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Match: A0A6H5K3U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U7_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.840e-25 Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = 1
Query: 7 ISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVTRAV-CPQKFINDHFLKVPLELRGRAKAVTCFVTYAPIEAQNSSNKHSFWTTLDKAMEEIPRHEQLLVLMDTNARTGRRDRGQLGSKDRNIMGAYGRGTLNDNGELLLSFANNHDLALMN 507
+ LQE R+ G + FT +G+ V+ CG + GG G VG+ V ++ +A +++++ + + E+ G AV +AP + + +K FW LD + +P E L VLMD NA+TG G + ++ MG YGR LNDNG LLL+FA ++ LA++N
Sbjct: 19 VGLQEVRKPGRTEFTASGFRVFT---CGTDKGGTHG---VGITVEEALCKASQYTMEYVDERLMAMRFEMTGHRGAVNFVAAHAPTDVATADSKRMFWEKLDSLVRRVPAKECLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNDNGRLLLTFATDNRLAVLN 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15660.3690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15660.3690.1 >prot_H-elongata_contig15660.3690.1 ID=prot_H-elongata_contig15660.3690.1|Name=mRNA_H-elongata_contig15660.3690.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp DVISLQETRRSGHSAFTYAGYSVYCSCECGRENGGKKGQGRVGLAVRTSVback to top mRNA from alignment at H-elongata_contig15660:2547..3068+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15660.3690.1 ID=mRNA_H-elongata_contig15660.3690.1|Name=mRNA_H-elongata_contig15660.3690.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig15660:2547..3068+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15660:2547..3068+ >mRNA_H-elongata_contig15660.3690.1 ID=mRNA_H-elongata_contig15660.3690.1|Name=mRNA_H-elongata_contig15660.3690.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig15660:2547..3068+ (Himanthalia elongata Himel1 dioecious)back to top |