mRNA_H-elongata_contig156432.3680.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156432.3680.1
Unique NamemRNA_H-elongata_contig156432.3680.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156432.3680.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.280e-21
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:    1 MFLTKEQRRRKRVLKDEQLKKRKDIDTTLKIISERAQRDAWAHAAGSV----LLDGERDGSAKRPRAVASIFERPTRALGSYAVAGGGGSFVDPGARPRDERG-GLWKAIPAPFPV 333
            MFLT +QR+RK  +K +Q KKRKDID   K++ +RAQRD+WAH+AGS     L   E D +AKRPR++ASIF++P R  G+   A          A+ R+E G G WK  PAP PV
Sbjct:  451 MFLTTDQRKRKEAIKRDQAKKRKDIDAANKLLRDRAQRDSWAHSAGSFSPVDLTSSEGDRAAKRPRSMASIFDKPVRPTGAEGAAAXXXL-----AKQREESGYGRWKPTPAPLPV 561
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BLAST of mRNA_H-elongata_contig156432.3680.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.860e-8
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MFLTKEQRRRKRVLKDEQLKKRKDIDTTLKIISERAQRDAWAHAAGS 141
            MFLT EQR+RK  +K +Q KKRKDID   K++S+RAQRD+WAH+A S
Sbjct:  700 MFLTTEQRKRKEAIKRDQAKKRKDIDAANKLLSDRAQRDSWAHSAAS 746
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156432.3680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGC2_9PHAE9.280e-2149.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI1.860e-863.83Similar to chromosome fragility associated gene 1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156432contigH-elongata_contig156432:881..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.0289063-CDS-H-elongata_contig156432:880..12131622929923.0289063-CDS-H-elongata_contig156432:880..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156432 881..1213 -
1691679209.8851504-CDS-H-elongata_contig156432:880..12131691679209.8851504-CDS-H-elongata_contig156432:880..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156432 881..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156432.3680.1prot_H-elongata_contig156432.3680.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156432 881..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156432.3680.1

>prot_H-elongata_contig156432.3680.1 ID=prot_H-elongata_contig156432.3680.1|Name=mRNA_H-elongata_contig156432.3680.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MFLTKEQRRRKRVLKDEQLKKRKDIDTTLKIISERAQRDAWAHAAGSVLL
DGERDGSAKRPRAVASIFERPTRALGSYAVAGGGGSFVDPGARPRDERGG
LWKAIPAPFPV
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mRNA from alignment at H-elongata_contig156432:881..1213-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156432.3680.1 ID=mRNA_H-elongata_contig156432.3680.1|Name=mRNA_H-elongata_contig156432.3680.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig156432:881..1213- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCACCAAGGAGCAACGTAGGCGAAAGCGGGTTCTCAAGGACGA
GCAGCTCAAGAAGCGCAAAGACATCGACACGACGCTTAAGATCATTAGTG
AACGCGCGCAGAGAGACGCCTGGGCCCACGCCGCGGGAAGTGTTTTACTT
GACGGGGAACGGGACGGGAGCGCGAAACGACCCCGCGCCGTGGCTTCCAT
CTTCGAAAGACCCACTCGCGCGCTGGGCTCTTACGCGGTCGCGGGGGGTG
GGGGGTCGTTCGTGGATCCGGGGGCGCGCCCTAGAGACGAGCGTGGTGGC
TTGTGGAAGGCGATACCGGCGCCGTTCCCTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig156432:881..1213-

>mRNA_H-elongata_contig156432.3680.1 ID=mRNA_H-elongata_contig156432.3680.1|Name=mRNA_H-elongata_contig156432.3680.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig156432:881..1213- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTCACCAAGGAGCAACGTAGGCGAAAGCGGGTTCTCAAGGACGA
GCAGCTCAAGAAGCGCAAAGACATCGACACGACGCTTAAGATCATTAGTG
AACGCGCGCAGAGAGACGCCTGGGCCCACGCCGCGGGAAGTGTTTTACTT
GACGGGGAACGGGACGGGAGCGCGAAACGACCCCGCGCCGTGGCTTCCAT
CTTCGAAAGACCCACTCGCGCGCTGGGCTCTTACGCGGTCGCGGGGGGTG
GGGGGTCGTTCGTGGATCCGGGGGCGCGCCCTAGAGACGAGCGTGGTGGC
TTGTGGAAGGCGATACCGGCGCCGTTCCCTGTAATGTTCCTCACCAAGGA
GCAACGTAGGCGAAAGCGGGTTCTCAAGGACGAGCAGCTCAAGAAGCGCA
AAGACATCGACACGACGCTTAAGATCATTAGTGAACGCGCGCAGAGAGAC
GCCTGGGCCCACGCCGCGGGAAGTGTTTTACTTGACGGGGAACGGGACGG
GAGCGCGAAACGACCCCGCGCCGTGGCTTCCATCTTCGAAAGACCCACTC
GCGCGCTGGGCTCTTACGCGGTCGCGGGGGGTGGGGGGTCGTTCGTGGAT
CCGGGGGCGCGCCCTAGAGACGAGCGTGGTGGCTTGTGGAAGGCGATACC
GGCGCCGTTCCCTGTA
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