mRNA_H-elongata_contig15630.3670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15630.3670.1
Unique NamemRNA_H-elongata_contig15630.3670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 2.860e-80
Identity = 152/207 (73.43%), Postives = 176/207 (85.02%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAG 623
            SMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI+ +E D M  TLA++T     + ND G+ R+AL AAQAPELEAE++  GRGA+IYHA+A+ G +SVR+ A+WIC EKKCS+VI F++++FA A LREKQN KMRFEFP Q+ QTLAQMFGFIE++R  LFIGEYALSQTSLEQVFNGFAAQQEEE G AAG
Sbjct: 1740 SMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHEETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVSVRDLAAWICVEKKCSRVIAFMQQHFAGAALREKQNAKMRFEFPPQKNQTLAQMFGFIENERDSLFIGEYALSQTSLEQVFNGFAAQQEEELGHAAG 1946
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BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 7.150e-76
Identity = 146/207 (70.53%), Postives = 171/207 (82.61%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAG 623
            SMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI  +E D M   LA +T     + ND G+ R+AL AAQAP+LEAE++  GRGA+IYHA+A+ G + VR+ A+WIC EKKCSKVI F+++ FA A++REKQN KMRFEFP Q+ QTLAQMFG +E++R+ L IGEYALSQTSLEQVFNGFAAQQEEE G AAG
Sbjct: 1760 SMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMAELAPATNGQGTLGNDGGVLRAALAAAQAPDLEAEVSATGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVENEREALCIGEYALSQTSLEQVFNGFAAQQEEELGHAAG 1966
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 9.030e-65
Identity = 132/207 (63.77%), Postives = 153/207 (73.91%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAG 623
            SMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFGKGFQLEARV AI  +E D M   LA +T     + ND G+ R+AL AAQAPELEAE++  GRGA+IYHA+A+ G + VR+ A+WIC EKKCSKVI F+++ FA A++REKQN KMRFEFP Q+ QTLAQMFG +E                    VFNGFAAQQEEE G AAG
Sbjct:  873 SMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMTELASATNGQGTLGNDGGVLRAALAAAQAPELEAEVSPTGRGASIYHAIANQGGVPVRDLAAWICVEKKCSKVIAFMQQQFAGAVMREKQNAKMRFEFPPQKNQTLAQMFGVVE--------------------VFNGFAAQQEEELGHAAG 1059
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.550e-64
Identity = 129/208 (62.02%), Postives = 156/208 (75.00%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A+S  + D M  T+A +TG  + + ++  +   AL AAQ PE   EI   GRGA +YHALA+   +  R+FA+W+C E+ CS+VI FV+ +F  A LREKQN KMRFE PQQE +TL  MFGFIE     L +GEY+LSQ SLEQ+FNGFA+QQ+EE G AAG+
Sbjct: 1762 SMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTDIDAMLATIAPATGGQASLPSE--LCGPALDAAQCPEFAPEITAEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIEDSAAELGVGEYSLSQISLEQIFNGFASQQQEEQGRAAGI 1967
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.850e-61
Identity = 130/255 (50.98%), Postives = 158/255 (61.96%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISS-----------------------------------------------KEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALCQRIGIMVGGR+RCLGSSQHLKTRFGKGFQLEARV A+S                                                ++ D M  T+A +TG  + + ++  +   AL AAQ PEL  EI   GRGA +YHALA+   +  R+FA+W+C E+ CS+VI FV+ +F  A LREKQN KMRFE PQQE +TL  MFGFIE     L +GEY+LSQ SLEQ+FNGFA+QQ+EE G AAG+
Sbjct:  334 SMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTVSWSWAATTARKALSHRMKYFGIQSQQYCRLPFYNNPVLSLFLEKPQDIDAMLATIATATGGQASLPSE--LCGPALDAAQCPELAPEITPEGRGAMVYHALANERTVLARDFAAWLCLEQSCSRVIAFVESSFKGARLREKQNAKMRFEIPQQEDKTLGAMFGFIEDNAAELGVGEYSLSQISLEQIFNGFASQQQEEQGRAAGI 586
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A7R9U8U7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8U7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.910e-41
Identity = 100/212 (47.17%), Postives = 127/212 (59.91%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFP--QQEGQTL--AQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALC RIGIMVGGR RCLGS+Q LKT+FG G+QLEA +   S +E   +A  +    G    I  D    + AL  A    L   +   G GA++   L   G I   + A+W+  EK+   + + ++E +    LRE Q  KMRFE P  Q +G  L  A +F  +ES ++P  I EY+LSQTSLEQ+FNGFAAQQEEE G AAGL
Sbjct:   57 SMEECEALCSRIGIMVGGRFRCLGSAQRLKTKFGLGYQLEASLKLPSEEEVTALASAMG---GAGEHITRDNLEEKFAL--AGGARLAKNVTPEGSGASVDFDLTHFGFIRAGDAATWLALEKEKQALTDALEETYPGVTLREAQGRKMRFEIPGSQADGAKLHLADVFDVLESLKEPCGIKEYSLSQTSLEQIFNGFAAQQEEELGHAAGL 263
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 176 bits (446), Expect = 7.640e-41
Identity = 106/215 (49.30%), Postives = 139/215 (64.65%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKE-ADNMARTL----AYSTGDSSQIL--NDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALC RIGIMVGGRLRCLGS+Q LK+RFG GFQLE  +   S +E AD + R      A + G ++Q L   D     +AL A  A  L  +  E G GA +YH L + G +++ +  ++   E++ ++   FV + F  A+LREKQ+ K+RFE+P Q G  L +MFG +E +R  L + EYALSQT+LEQVFN FA QQEEE G AAG+
Sbjct: 1752 SMEECEALCTRIGIMVGGRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEELADGLRRVAEGAPAAAAGGAAQRLAQQDFAPVLAALGADPAQWLP-KFCETGAGALLYHELLARGGVALGDLVAFHARERRAAQAEAFVADTFKGAVLREKQSGKLRFEYPPQPGLALGEMFGALEDRRAQLGVEEYALSQTTLEQVFNFFAGQQEEETGRAAGI 1965
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 159 bits (401), Expect = 3.400e-39
Identity = 95/210 (45.24%), Postives = 122/210 (58.10%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQT--LAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALC RIGIMVGG+LRCLGS+QHLK+RFG G+QLE      +++E       L    G  S+     G     L   +  +   E    G  AT+ H LA  G +S  E A+W   + +   +  +V   F  A+LRE+Q  + RFE P + G    +A MF  +E QR+ L I EYALSQTSLEQ+FN FA+QQEEE G A G+
Sbjct:   94 SMEECEALCTRIGIMVGGQLRCLGSAQHLKSRFGLGYQLELGARTATAEELATATEKLQAEGGQLSE--GQLGAALQRLGYGEDYDWRTEFLPSGSAATLGHELAVKGAVSAEELAAWALLDGRVRALHAWVGRAFEGAVLRERQAGRARFEVPHRAGGRGGMAGMFAALEGQREALGIEEYALSQTSLEQIFNFFASQQEEEKGKAEGM 301
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: K8YZT2_NANGC (Antibiotic transport system ATP-binding protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YZT2_NANGC)

HSP 1 Score: 161 bits (407), Expect = 1.380e-37
Identity = 95/238 (39.92%), Postives = 138/238 (57.98%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEADNMARTLAYSTGDSSQ----ILNDPGIFRSALIAAQA---------PELEAEIAE------------HGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQT-----LAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALC RIGIMVGGR RC+GS+QHLK+R+G G+QLE    +++    + +  +    +GD ++    +L     F + L  A A         P+LE  +A              G GA ++  + + G I VREFA W   E +   ++ F+ +N+ +A+LRE+Q  K+RFE P ++  T     L++MFG IE  +  L + +Y++ QTSLEQ+FN FA QQEEE G AAG+
Sbjct:  342 SMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI---SVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRMESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRLHVEDYSVCQTSLEQIFNFFAGQQEEEKGPAAGI 576
[Close]
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Match: A0A4D9DBM5_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBM5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.260e-36
Identity = 96/235 (40.85%), Postives = 136/235 (57.87%), Query Frame = 3 
Query:    3 SMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVN------AISSKEADNMART-------------LAYSTGDSSQILNDPGIFRSALIAAQAPELEA---EIAEHGRGATIYHALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRFEFPQQEGQT-----LAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEEHGAAAGL 626
            SMEECEALC RIGIMVGGR RC+GS+QHLK+R+G G+QLE  V         +S + D+   T             LA   G ++++  +        IA  A +  A    I+  G GA ++  + + G I VREFA W   E +   ++ F+ +N+ +A+LRE+Q  K+RFE P ++  T     L++MFG IE  +  L + +Y++ QTSLEQ+FN FA QQEEE G AAG+
Sbjct:  660 SMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGGETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIGVREFAGWCSLEDRVESILRFIMDNYPDAVLRERQGTKVRFEIPSKDTNTGAARKLSEMFGLIEDNKGRLHVEDYSVCQTSLEQIFNFFAGQQEEEKGPAAGI 894
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15630.3670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE8_ECTSI2.860e-8073.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE9_ECTSI7.150e-7670.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M8_9PHAE9.030e-6563.77ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZA6_ECTSI2.550e-6462.02ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A6H5JVX0_9PHAE1.850e-6150.98ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7R9U8U7_9STRA4.910e-4147.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XYR3_HETAK7.640e-4149.30Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V1S0H3_HETAK3.400e-3945.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YZT2_NANGC1.380e-3739.92Antibiotic transport system ATP-binding protein (F... [more]
A0A4D9DBM5_9STRA1.260e-3640.85ABC transporter domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15630contigH-elongata_contig15630:2706..7472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.8e-79
Seed eggNOG ortholog2880.D7FZE8
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size3382
Cds size693
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.5477645-UTR-H-elongata_contig15630:2705..27101622929921.5477645-UTR-H-elongata_contig15630:2705..2710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 2706..2710 +
1691679209.34932-UTR-H-elongata_contig15630:2705..27101691679209.34932-UTR-H-elongata_contig15630:2705..2710Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 2706..2710 +
1622929921.6227658-UTR-H-elongata_contig15630:4647..60791622929921.6227658-UTR-H-elongata_contig15630:4647..6079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 4648..6079 +
1691679209.40647-UTR-H-elongata_contig15630:4647..60791691679209.40647-UTR-H-elongata_contig15630:4647..6079Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 4648..6079 +
1622929921.6336107-UTR-H-elongata_contig15630:6220..74721622929921.6336107-UTR-H-elongata_contig15630:6220..7472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 6221..7472 +
1691679209.4184196-UTR-H-elongata_contig15630:6220..74721691679209.4184196-UTR-H-elongata_contig15630:6220..7472Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15630 6221..7472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.5653117-CDS-H-elongata_contig15630:2710..28541622929921.5653117-CDS-H-elongata_contig15630:2710..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 2711..2854 +
1691679209.3588667-CDS-H-elongata_contig15630:2710..28541691679209.3588667-CDS-H-elongata_contig15630:2710..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 2711..2854 +
1622929921.580853-CDS-H-elongata_contig15630:3184..34181622929921.580853-CDS-H-elongata_contig15630:3184..3418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 3185..3418 +
1691679209.3671207-CDS-H-elongata_contig15630:3184..34181691679209.3671207-CDS-H-elongata_contig15630:3184..3418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 3185..3418 +
1622929921.5975811-CDS-H-elongata_contig15630:3685..38111622929921.5975811-CDS-H-elongata_contig15630:3685..3811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 3686..3811 +
1691679209.378783-CDS-H-elongata_contig15630:3685..38111691679209.378783-CDS-H-elongata_contig15630:3685..3811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 3686..3811 +
1622929921.60838-CDS-H-elongata_contig15630:4458..46471622929921.60838-CDS-H-elongata_contig15630:4458..4647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 4459..4647 +
1691679209.3865893-CDS-H-elongata_contig15630:4458..46471691679209.3865893-CDS-H-elongata_contig15630:4458..4647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15630 4459..4647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15630.3670.1prot_H-elongata_contig15630.3670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15630 2711..4647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15630.3670.1

>prot_H-elongata_contig15630.3670.1 ID=prot_H-elongata_contig15630.3670.1|Name=mRNA_H-elongata_contig15630.3670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
MEECEALCQRIGIMVGGRLRCLGSSQHLKTRFGKGFQLEARVNAISSKEA
DNMARTLAYSTGDSSQILNDPGIFRSALIAAQAPELEAEIAEHGRGATIY
HALASHGMISVREFASWICSEKKCSKVIEFVKENFANAILREKQNNKMRF
EFPQQEGQTLAQMFGFIESQRKPLFIGEYALSQTSLEQVFNGFAAQQEEE
HGAAAGLTTPGLGRVVSTRPIALTGPSRLQ*
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mRNA from alignment at H-elongata_contig15630:2706..7472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15630.3670.1 ID=mRNA_H-elongata_contig15630.3670.1|Name=mRNA_H-elongata_contig15630.3670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4767bp|location=Sequence derived from alignment at H-elongata_contig15630:2706..7472+ (Himanthalia elongata Himel1 dioecious)
ACAGCATGGAAGAATGCGAGGCCCTGTGCCAGCGCATCGGTATCATGGTT
GGGGGTCGCCTTCGTTGCCTGGGCAGCTCCCAGCACCTCAAGACGCGATT
TGGCAAGGGTTTCCAGCTCGAGGCGAGGGTCAACGCTATTTCTTCCAAGG
TGCGCAGCCATTTACGGGGGCTCGACTGTACGCAGGTCGCCAGTATCCAC
CACAGCTTCTGCTTTGTATACCAGCTGTTTGACACTTAGTTTGCGCTGGT
TCGCGTGAGACGCGTATATCAATGGAGATGATTGGGATCATTGCTGAAAA
CAGCTCAGCATCGGATGCTGTCGACGGCATCTTTACCTCTGCTCCATTCC
TTGTTCCCTCCATAAAATTATGTAAAACGAGTTGAGAACTAGTACTTTTA
ACGTTGTATTTCCTTCCCACCTCTCCTCGCGTCTGCTCTGCTTATTGTAT
CCTTACATTTCCGGCGATGGGCCATCCAGGAAGCCGATAACATGGCCAGA
ACATTGGCCTACTCCACAGGCGACTCGTCCCAGATCCTCAACGACCCTGG
TATATTCAGGTCTGCATTGATTGCGGCGCAGGCGCCAGAGCTGGAGGCGG
AGATTGCAGAGCACGGACGAGGAGCGACCATCTATCATGCTTTGGCTAGT
CACGGCATGATTTCCGTCAGGGAGTTTGCATCGTGGATTTGCTCAGAAAA
GAAGTGCTCTAAGGTGAGAGGCCGGAAAATGAGTAGGGGATGTTAGAAAA
ATACAAGCCTATGCCACGCAATATGTGCGGTGCATCACAGTGGTGTAGAC
TGCTTGGTGAAGTTAAGGTTTATAGGAGGCAACATCGTAGATTTTTATGC
AGCTCTGCCCGCGTGTTAACACGACCATTTTATCGATATTGCTATATTTG
AACTCAAAATATGGCATCTCCCATGTTTTCCGTTTTGTATGCATCATGTA
CTTCTCCTCGCGTGCCGCGCATTTTGTTAGGTTATTGAGTTTGTCAAGGA
GAACTTTGCGAACGCGATACTTCGGGAGAAGCAAAACAATAAAATGCGTT
TTGAGTTCCCCCAGCAGGAAGGCCAGACCCTCGCGCAGATGTTCGGCTTT
ATCGAGGTGAGGAACAGCGGCGGCATCAATCTCGGTATACAAACAAAGTT
CACGATAGATGTATACGGCGTGTCTCAAGCTTACGTGTTGGATGTCTAAG
GCGTCATCGAGCTTACAATATCTGACTCGGGCACAGAAAGTTTCGTTGCG
AAATGTCGTGTGTATGTAATCTAAAGTTTAGCACGGGGTCGTGCCATAAT
TGGACGAAAGCAAACCGGTCTTACGTTGACTGAGGTCACTCGGGGCGCGA
ATCCTTTATTTTTTGCTGTGTTTCCTTTTGCAGTGTGCAGCGTCGTGTAT
TCCAAAATTAACCACCTAAACTAACCAGTGCTGATTGGTTTAGATCGTTT
TATTTCCCCTCAAAGTTATTCCTCGCACTGCTAGGATCAAACCCACGACC
GAGATGTTGGTAGACGGAAATTGACCACCACCTCGACCAGCGAGCGTTGA
TTAATCTAGCTAGGTGATTACTCTCCGACTGCAGTCGCTATCTCACTGAG
AGTACCTAACCGACCGCGCTTCAATCTTGCAACCGAGAGCGACATCCGTG
ATATGAAAAGCGCTTGACACTGTCCTCTGCCGTACCCACGTTGCGATGCG
ATTCGGTTTCGCTTTCCATGGCAATAAATTGTCGATTCACCCGGATCCCG
AAGAGCCAACGCAAGCCGCTCTTTATCGGCGAGTATGCCCTGAGCCAGAC
GTCCCTTGAACAAGTTTTTAATGGGTTTGCCGCCCAGCAAGAAGAGGAGC
ACGGGGCCGCTGCTGGACTAACCACACCTGGGTTGGGCCGTGTCGTTTCT
ACCCGTCCTATCGCCTTGACCGGCCCTTCACGCCTGCAGTAATTATTTCT
ATTTTTCTACCACCGTACCCCCCTCCCCCTCCACGCCCCCCGTGAACTGG
TCCTTTTGGAGTTCATTAAAGCTACCATCTTCGCGGTTAATTGACGTACC
ATTGTACATGGACAAAACAAACGCGACGGTTTGTGCATTGGGGAGTACTC
ACTGAGCCAGACATCCTTGAAGCAAGTGTTGAACGGTTTCGTTTCTCAGC
AAGAAGAGAAAAGGCGCGTCGCAAGGATGTCATGATCGACGGCGTCTGGC
TGGTAGACCGGATCGAGCGCTGATCTAATATCGTGTTCTTGACATTATTA
CGTCCCACCATACCGACTTTCGCTTTCGTGATTGCATGTTCTTGATCGGC
ATGCCCTAACCGTGCTTCTCCACCGGAGCACTTGAATCATCTCATTTGGT
TTGGATTAATCAAGTGTATTATCCTTCGCGCGAAGGGGCTTGGCCGACGA
TAGATGCATCGAGCTGCTTTGAAACTTAGCAAGGTCCTGTATTATGCAAT
GGGAAGAACACGGGGCAGAGATAATCAACTGCACATCAAAGAGGCGGGGA
TCATTGGAAGCTTTGCTGCGTTCATGGTTTGGGAAAATAGCACCTCACCT
TCGTGAATATTGCGAACCTTTTGTGTCAAGACATCTCGTTCCTTTCACTC
TGCCCCTTCCCTTTTCAGTGTTTTGCCTCAGCATCGCTTTAGGGTTAAGA
AAAGTATGTAAACGTATGCCCTGAGTAGGCCAGGCGGCAGGATGGTACTT
GAAATTCAAATCAAGCCTGTTGTGGTCATTTTGCGTATGTAGGCGTATAG
CCGGCGCCTGTTCTCTGTGACGAGTTTGAGGTGCAGGAAGTTGGTTGATC
GTATGATATTTCCATAAGGTGGCCATTTTGAAGGCTCTAGTAAACGTTTC
CCTGAAGTGCATCAAATATTTTGGCGCTCGAGGTCGTACGCATAATACAC
CGTCGGGACTCGGGATGTAAGATCACTGCGGCTCCATCTATTTTGTGGCC
GGGGTAAAGGAGTTTGGCATTCAGTACCTGTTATCTGTTACGGGCTTGGC
ATGCGGTGGGTTGATCGACCGCATGCTTTGTCCACGATGTGTTTTTTTGT
AGAGACACTCGTAGACTTGCTTCCTTAGCGGCATCAGAGATACTTGCCTT
CGAGGGGGCGTATGTGAACGTGTCGGTGTCTGTGTAGGCATAACTCATCG
AAGCTCGGGAGAGATACAATCGCTGCGGCTCCTAATCAAACGATAGGGGA
GAGGGGCGAACTTGCTAGAACGTCAGTGGTTCATAAAGGGGCGTGTTAAC
TTATTCCACTTCGGGAGACAAAATTATCTATCCCCTGTTTTACTGTAATC
AAATATCACATCTAAAGCGCTACAACCGGGGATACGACGATTGGATACCT
GGAAGGAGAATAATTTGGATCCTCTCCTCCGAAAAGCGGGGAAAATTATG
TTACGCCCCCTCTCGCCCTAATCTTTGGATCGATATATATAGATATATAG
ATATAAATATATATATATATATATGTCGTGGCGTTGGAGGTGGTATGTAT
GTGTACGTGACGTTTTTTTTGTGTGTTCATACCCCGTCAGGATATGGGAG
ATACGATCGCTCCGGCTTCATATATATATATATATTTGTTCTTGTTGTTA
CAAATTAGTTTGTCATTCGGTGCCCTTTTCTCTGTGACAAGTTTGAGAGC
CGGTTAGTTGGTCGACCGCATGCTTTTTCCACGAGGTGTAATTTGTAAAG
GCTCTGGTAGAGATGCTTTTGGAGCATATCCAAGATCCTGGCGTTCGTAT
GTGTACGTGTCGGTGTGCTGTGCGCATACCTCGTCTGGATTTGGAAGGCA
CGCATATATATAATTGCTGTAGTGCTAAATGAGTTTGATTTTCTGCTGAA
AGCATGAGAGGCGGTTTGATATGGCATTTTCATGAGATTGTAATTGTGAA
GGCTCTATTGGCAGAATACTTGCTTCCTTGAGCACATTAAAGATCTTAGC
GTTCGAGGCGGGGGGTATATGTAGATTTCGAGATGTTGTATGTCCATCAT
TTGTCAGGATATGATATATATTCCGCTCTGGCAAATGAGCTTCGTGCTCG
GTACCTGTTCTCTGCTGCGAGTTTTAGAAGTGGTTGATTGGCAGACCGCA
TGCCCTGTCCATACCGTGGTATTTTCGGAGGCTCTCATAAGCTTGTTTCG
TGGAGAGCATCAACGATCTTAGAGTTTGAGGCGGCACGTATGTGCACGTG
TTGGTGTGTTGCGTGCACATGCGTTTCGGAATATGAGAGATACGATCGCT
ACGGCTTCATATATACATACATACATCTATAGTATTGCGGTCGGGGTAAA
TTGAGCTTGGTAGACTGAGAGTTGGAGTTTGGCGATTAAGACTGGAGCCC
CCCCCCCCCCCCCCCCACAAGGGGGAAAATTATGTCTTTTGAACAAAACA
CCACCTTTTTTTTTTTTTTTTGTCGTTTTTTTATTTTTTGATTATCACTA
GTTTAGTGTGTTGCTATAGTATGAACAAAATGGGCTTTATGAATCTATCC
ATATATCCTTAGCTCACGCCTACCTACGTGAATTTTTGCGATGTGAGTCC
ATAGGATTCGGGCAGAGTGTATATAACCTTTTTTTCACCCTAAACCGGTG
GGTCGTATCATATTGATGATGTGTCCGAGTGCTGAACAATACATAACGGT
GTGGGAAGCTAGCATGGTTGGGACCCGATCGATTAATACCAAGAGCACAC
ACCTACACACACCTTTAATATCCCCATTGGAAAATAGTCAGAACAACAGC
ACTCGGCAGCCAGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig15630:2706..7472+

>mRNA_H-elongata_contig15630.3670.1 ID=mRNA_H-elongata_contig15630.3670.1|Name=mRNA_H-elongata_contig15630.3670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig15630:2706..7472+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAATGCGAGGCCCTGTGCCAGCGCATCGGTATCATGGTTGGGGG
TCGCCTTCGTTGCCTGGGCAGCTCCCAGCACCTCAAGACGCGATTTGGCA
AGGGTTTCCAGCTCGAGGCGAGGGTCAACGCTATTTCTTCCAAGATGGAA
GAATGCGAGGCCCTGTGCCAGCGCATCGGTATCATGGTTGGGGGTCGCCT
TCGTTGCCTGGGCAGCTCCCAGCACCTCAAGACGCGATTTGGCAAGGGTT
TCCAGCTCGAGGCGAGGGTCAACGCTATTTCTTCCAAGGAAGCCGATAAC
ATGGCCAGAACATTGGCCTACTCCACAGGCGACTCGTCCCAGATCCTCAA
CGACCCTGGTATATTCAGGTCTGCATTGATTGCGGCGCAGGCGCCAGAGC
TGGAGGCGGAGATTGCAGAGCACGGACGAGGAGCGACCATCTATCATGCT
TTGGCTAGTCACGGCATGATTTCCGTCAGGGAGTTTGCATCGTGGATTTG
CTCAGAAAAGAAGTGCTCTAAGGAAGCCGATAACATGGCCAGAACATTGG
CCTACTCCACAGGCGACTCGTCCCAGATCCTCAACGACCCTGGTATATTC
AGGTCTGCATTGATTGCGGCGCAGGCGCCAGAGCTGGAGGCGGAGATTGC
AGAGCACGGACGAGGAGCGACCATCTATCATGCTTTGGCTAGTCACGGCA
TGATTTCCGTCAGGGAGTTTGCATCGTGGATTTGCTCAGAAAAGAAGTGC
TCTAAGGTTATTGAGTTTGTCAAGGAGAACTTTGCGAACGCGATACTTCG
GGAGAAGCAAAACAATAAAATGCGTTTTGAGTTCCCCCAGCAGGAAGGCC
AGACCCTCGCGCAGATGTTCGGCTTTATCGAGGTTATTGAGTTTGTCAAG
GAGAACTTTGCGAACGCGATACTTCGGGAGAAGCAAAACAATAAAATGCG
TTTTGAGTTCCCCCAGCAGGAAGGCCAGACCCTCGCGCAGATGTTCGGCT
TTATCGAGAGCCAACGCAAGCCGCTCTTTATCGGCGAGTATGCCCTGAGC
CAGACGTCCCTTGAACAAGTTTTTAATGGGTTTGCCGCCCAGCAAGAAGA
GGAGCACGGGGCCGCTGCTGGACTAACCACACCTGGGTTGGGCCGTGTCG
TTTCTACCCGTCCTATCGCCTTGACCGGCCCTTCACGCCTGCAGTAAAGC
CAACGCAAGCCGCTCTTTATCGGCGAGTATGCCCTGAGCCAGACGTCCCT
TGAACAAGTTTTTAATGGGTTTGCCGCCCAGCAAGAAGAGGAGCACGGGG
CCGCTGCTGGACTAACCACACCTGGGTTGGGCCGTGTCGTTTCTACCCGT
CCTATCGCCTTGACCGGCCCTTCACGCCTGCAGTAA
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