mRNA_H-elongata_contig1562.3668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1562.3668.1
Unique NamemRNA_H-elongata_contig1562.3668.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: D7FR34_ECTSI (4HBT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR34_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.870e-65
Identity = 133/256 (51.95%), Postives = 164/256 (64.06%), Query Frame = 2 
Query:   38 SMPEVRQELRRVALEHLTKSILANEAAGAGSDNEGGIKDD-----VEEGG-------VAQILLEAKGDEDD--------------LPKNLFDMDRVLENMPLLRTDHAFFETMNSDETISCPFVLYKPRRERPGIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKPRE-----------EPKEAARG 694
            SM   ++ELRRVAL HLTKS+ A    GA +DN      D      EEGG       +A  LL     ED+              LP N+ D+D++L   PLLR D+AF +T+N+D  ISCPFVL +P ++  GIEAVVRFGKS AGHP+ VHGGVTA+TFDNL G ALF+  T  VFTAY+KVD+KA LPC+TT V+D+TVDR EGRKL+V GRLKS DG V +++AEALF+KP+E           EP E  RG
Sbjct:    7 SMSSEKRELRRVALAHLTKSVRA----GAVNDNLKNQSQDSTVGAYEEGGGVGGTVALAAALLRPGESEDEEANQSVGGEGDTVPLPPNVHDVDKILVKTPLLRNDNAFHDTLNNDSGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKVDFKAPLPCLTTAVVDITVDRKEGRKLYVTGRLKSLDGTVTFSSAEALFVKPKEASSGGGEGRDGEPSELLRG 258
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: A0A835YMX9_9STRA (HotDog domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX9_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.440e-38
Identity = 72/148 (48.65%), Postives = 100/148 (67.57%), Query Frame = 2 
Query:  227 LFDMDRVLENMPLLRTDHAFFETMNSDETISCPFVLYKPRRERPGIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKPRE 670
            L D+DR+L   P  + DH F +T+N  + + CP+V Y   R+   ++AVVRFG+ T GHP  VHGG+T++TFDNLLG   F+ G   V TAYL VD+KA LP  T T+++V +DR EGRKLF+ G + S DG + YAT  +LF+ P++
Sbjct:   95 LLDVDRLLATNPAYKRDHVFHDTLNHYQGVQCPYVTYD--RDSNSLKAVVRFGEQTRGHPNLVHGGITSLTFDNLLGWLQFLEGRMAVLTAYLHVDFKAPLPTTTQTMVEVKMDRQEGRKLFMVGAIMSLDGNITYATCTSLFVIPKD 240
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: A0A836CB13_9STRA (HotDog domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB13_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.850e-34
Identity = 69/148 (46.62%), Postives = 94/148 (63.51%), Query Frame = 2 
Query:  227 LFDMDRVLENMPLLRTDHAFFETMNSDETISCPFVLYKPRRERPGIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKPRE 670
            L D+  +L   P    DH   +T+N    + CP V +     R  ++AVVRFG+ T GHP+ VHGG+TA+TFDNL G  +FM G   V TAYL VD+KA LP  TT + +V +DR EGRKLF +G +++ DG + +AT  +LFI PR+
Sbjct:    1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSHDSAGCR--LQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHVDFKAPLPTHTTVLAEVRIDRQEGRKLFASGTIRTLDGSITFATCSSLFIIPRD 146
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: A0A6U4Q0S4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4Q0S4_HEMAN)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-15
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 2 
Query:  335 YKPRRERPGIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKPR 667
            +K R  + G++ V  FG    GHP TVHGG  AM  D   G A    G  P +TA++ ++Y+  LP    T++D+  +++EGRK+F+ G+L    G+V ++ A  LF++PR
Sbjct:  127 HKERLSKRGVKCVWHFGDDGVGHPLTVHGGCIAMAMDESFGHAYMSLGRGPGYTAFIHINYRVPLPTGDPTLIDIEFEKLEGRKVFMKGKLTDGKGKV-FSDATCLFVQPR 236
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: A0A0U0WBD1_9MYCO (Thioesterase n=3 Tax=Mycobacterium TaxID=1763 RepID=A0A0U0WBD1_9MYCO)

HSP 1 Score: 82.8 bits (203), Expect = 2.840e-14
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 2 
Query:  329 VLYKPRRERPG-IEAVVRFGKSTAGHPETVHGGVTAMTFDNLLG-TALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIK 661
            V  K R+   G +E   RFG+   G    VHGG   M FD +LG  A+ + G+    TAYLK+DY+ ++P       D  VDRVEGRK+FV+GRL   DG+ L   A+ALF++
Sbjct:   91 VPMKARKTDDGRVEGWARFGRYHLGRNGAVHGGCLGMLFDTVLGLAAVLLTGSRRQRTAYLKIDYRQIVPIERELRFDAGVDRVEGRKIFVSGRLT--DGDTLLTEADALFVR 201
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: K5BGF4_MYCHD (Thioesterase superfamily protein n=1 Tax=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) TaxID=1122247 RepID=K5BGF4_MYCHD)

HSP 1 Score: 82.8 bits (203), Expect = 2.970e-14
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 2 
Query:  362 IEAVVRFGKSTAGHPETVHGGVTAMTFDNLLG-TALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIK 661
            IE  VRF +   G     HGG  ++ FD+LLG TA  + G+    TA+L VDY+ + P      +D T+DR+EGRK+FV+GRL+  DG+ L A A ALF+K
Sbjct:  105 IEGTVRFQRFHLGRNGAAHGGAVSLLFDSLLGFTAFTLSGSRGQRTAFLHVDYRNITPIEKDLQVDATLDRMEGRKIFVSGRLR--DGDTLLAEANALFVK 203
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: A0A7D9LEU6_PARCT (4HBT domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LEU6_PARCT)

HSP 1 Score: 82.8 bits (203), Expect = 4.160e-14
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2 
Query:  362 IEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKP 664
            I+AVV+FG  T G    VHGG  A   D  +G      G +   TA L V YK  +P  TTT+++  +D++EGRK+FV+G +K+ DG  +Y+TA ++FI P
Sbjct:  120 IKAVVQFGLYTRGPVGLVHGGAIATILDVAMGNCAIYSG-YRSITANLNVYYKRPIPLNTTTLVEAKIDKIEGRKVFVSGAIKTVDGCAIYSTATSIFIMP 219
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: UPI001E4DEEEA (PaaI family thioesterase n=1 Tax=Subtercola sp. AK-R2A1-2 TaxID=2895559 RepID=UPI001E4DEEEA)

HSP 1 Score: 82.0 bits (201), Expect = 9.320e-14
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 2 
Query:  359 GIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLK-SFDGEVLYATAEALFIKPREEPKEAARGDKQDVREA*L 724
            G+EA   F +   G P  VHGG++A+ FD LLGTA+   G + + TA L VDY+  LP  T   +   V   EGRK ++ G +  S   +V++ATA ALFI+PR+  +E   G   D   A L
Sbjct:  104 GVEARGAFDRRFEGPPGFVHGGISALIFDELLGTAMARAGRWGM-TAQLTVDYRRALPLDTELTMKAAVSSTEGRKTWIEGSIAVSSQPDVVFATASALFIQPRQATREQYFGSLVDANGASL 225
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: UPI00106D3506 (acyl-coenzyme A thioesterase THEM4-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D3506)

HSP 1 Score: 80.5 bits (197), Expect = 9.690e-14
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:  362 IEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFI 658
            ++AVV+FG  T G    VHGG  A   D ++G+ +   G + V T  L ++YK+ LP  +TT+++  +D++EGRK+F +G +KS DG  +Y+   A+FI
Sbjct:   77 MKAVVQFGNYTRGPIGFVHGGAIATILDFVIGSCVLFCGYY-VLTGSLNIEYKSPLPLNSTTLVEARIDKIEGRKIFSSGEIKSADGSKIYSKGTAIFI 174
[Close]
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Match: UPI001F376B15 (PaaI family thioesterase n=1 Tax=Streptomyces sp. GQFP TaxID=2907545 RepID=UPI001F376B15)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-13
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 2 
Query:  362 IEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPVFTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYATAEALFIKPR 667
            + A V FG    G    VHGG   + FD+LLGT +   G     TA+L V+Y+ + P      LD T+DR++GRK FV+GRL+  +GE L A AEALF++ R
Sbjct:  107 LRATVTFGAEHVGGNGAVHGGFLPLLFDDLLGTFVSTQGQPGSRTAFLTVNYRKITPVHRELQLDATIDRIDGRKTFVSGRLR--EGEDLLADAEALFVQLR 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1562.3668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR34_ECTSI5.870e-6551.954HBT domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YMX9_9STRA1.440e-3848.65HotDog domain-containing protein n=1 Tax=Tribonema... [more]
A0A836CB13_9STRA1.850e-3446.62HotDog domain-containing protein (Fragment) n=1 Ta... [more]
A0A6U4Q0S4_HEMAN2.870e-1537.84Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0U0WBD1_9MYCO2.840e-1443.36Thioesterase n=3 Tax=Mycobacterium TaxID=1763 RepI... [more]
K5BGF4_MYCHD2.970e-1445.54Thioesterase superfamily protein n=1 Tax=Mycolicib... [more]
A0A7D9LEU6_PARCT4.160e-1442.574HBT domain-containing protein n=1 Tax=Paramuricea... [more]
UPI001E4DEEEA9.320e-1440.65PaaI family thioesterase n=1 Tax=Subtercola sp. AK... [more]
UPI00106D35069.690e-1439.39acyl-coenzyme A thioesterase THEM4-like n=1 Tax=De... [more]
UPI001F376B151.400e-1344.12PaaI family thioesterase n=1 Tax=Streptomyces sp. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1562contigH-elongata_contig1562:8798..13272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue9.7e-57
Seed eggNOG ortholog2880.D7FR34
Preferred nameTHEM4
KEGG koko:K16339
KEGG Pathwayko04151,map04151
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006644,GO:0006650,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009117,GO:0009150,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012501,GO:0016020,GO:0016043,GO:0016289,GO:0016290,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031974,GO:0032048,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035336,GO:0035337,GO:0035383,GO:0035556,GO:0035965,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043491,GO:0043603,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046483,GO:0046486,GO:0046902,GO:0047617,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0051896,GO:0051898,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090559,GO:1901135,GO:1901360,GO:1901564,GO:1901568,GO:1902108,GO:1902531,GO:1902532
EggNOG free text desc.thioesterase
EggNOG OGsKOG4781@1,KOG4781@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioesterase superfamily
Ec32 orthologEc-09_003660.1
Exons5
Model size2349
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.3606756-UTR-H-elongata_contig1562:8797..104251622929921.3606756-UTR-H-elongata_contig1562:8797..10425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1562 8798..10425 -
1691679209.2512207-UTR-H-elongata_contig1562:8797..104251691679209.2512207-UTR-H-elongata_contig1562:8797..10425Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1562 8798..10425 -
1622929921.4671159-UTR-H-elongata_contig1562:13232..132721622929921.4671159-UTR-H-elongata_contig1562:13232..13272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1562 13233..13272 -
1691679209.3267527-UTR-H-elongata_contig1562:13232..132721691679209.3267527-UTR-H-elongata_contig1562:13232..13272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1562 13233..13272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929921.3814123-CDS-H-elongata_contig1562:10425..106381622929921.3814123-CDS-H-elongata_contig1562:10425..10638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 10426..10638 -
1691679209.2732315-CDS-H-elongata_contig1562:10425..106381691679209.2732315-CDS-H-elongata_contig1562:10425..10638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 10426..10638 -
1622929921.4003189-CDS-H-elongata_contig1562:10834..109331622929921.4003189-CDS-H-elongata_contig1562:10834..10933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 10835..10933 -
1691679209.2851763-CDS-H-elongata_contig1562:10834..109331691679209.2851763-CDS-H-elongata_contig1562:10834..10933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 10835..10933 -
1622929921.4188626-CDS-H-elongata_contig1562:11217..113241622929921.4188626-CDS-H-elongata_contig1562:11217..11324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 11218..11324 -
1691679209.293858-CDS-H-elongata_contig1562:11217..113241691679209.293858-CDS-H-elongata_contig1562:11217..11324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 11218..11324 -
1622929921.4338195-CDS-H-elongata_contig1562:11929..121251622929921.4338195-CDS-H-elongata_contig1562:11929..12125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 11930..12125 -
1691679209.3043075-CDS-H-elongata_contig1562:11929..121251691679209.3043075-CDS-H-elongata_contig1562:11929..12125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 11930..12125 -
1622929921.4485934-CDS-H-elongata_contig1562:13166..132321622929921.4485934-CDS-H-elongata_contig1562:13166..13232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 13167..13232 -
1691679209.3172593-CDS-H-elongata_contig1562:13166..132321691679209.3172593-CDS-H-elongata_contig1562:13166..13232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1562 13167..13232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1562.3668.1prot_H-elongata_contig1562.3668.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1562 10426..13232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1562.3668.1

>prot_H-elongata_contig1562.3668.1 ID=prot_H-elongata_contig1562.3668.1|Name=mRNA_H-elongata_contig1562.3668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MPEVRQELRRVALEHLTKSILANEAAGAGSDNEGGIKDDVEEGGVAQILL
EAKGDEDDLPKNLFDMDRVLENMPLLRTDHAFFETMNSDETISCPFVLYK
PRRERPGIEAVVRFGKSTAGHPETVHGGVTAMTFDNLLGTALFMHGTFPV
FTAYLKVDYKAMLPCMTTTVLDVTVDRVEGRKLFVAGRLKSFDGEVLYAT
AEALFIKPREEPKEAARGDKQDVREA*
back to top

mRNA from alignment at H-elongata_contig1562:8798..13272-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1562.3668.1 ID=mRNA_H-elongata_contig1562.3668.1|Name=mRNA_H-elongata_contig1562.3668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4475bp|location=Sequence derived from alignment at H-elongata_contig1562:8798..13272- (Himanthalia elongata Himel1 dioecious)
AGATACGACACCGGCACAAACGCCCTCAGAAGACACATCGATGCCTGAAG
TGAGGCAAGAGCTGAGGCGCGTCGCGCTTGAGCATCTGACGAAGTCCATA
CTAGCGGTGAGCTTAGCGTAAAGCTTGTTTTTTTGTCCCTTCGTGAAGAC
GCGAGTCGCACCATCCAACTATTTTGTTCGTTCGTCTTCGGTGAACTTTT
AGCGTGTCAATTTGCGACGGTCAGGAGCGAAACGATCGATGTTTTGATTA
GGGGGTGCTTTCTACTTTTTCCCTTCCCTGCTAAATACAGTCCGGCATGG
CAACCACATTTTGTGATGGTTAGGGTCCATTCGCTTTATGTGGACACACA
TATTTATACACACTGGTACCCCCCCTCCCTCCCCCACTTGTCATGTATGA
TCAGAGGTTTTTGTAGCAAATATGATCAAATCCCCCATTGGGAGGATCAA
TGCGAGAGTAGCCTGGAAGAGCTAGCATGACAGAACCGGATTGCGCGGTT
ATATACAATTTAATAAATACACACACACACACACACACACAATACGAGTG
GCATAGAAGGGCTAGGACGACAGGGCCGGATTGCGCGGTTATGTGCAATT
TAATAAATACACATACACACACACAAACACACACACACACACACTAATTG
AGAGGACTAATGCGAGTACCCTGAAATGACTAGTATGACAGGGCCAGATT
GCGCGGTTATTTGCAATTTAATGAATAAACACACAAACACACACACACAC
GCTTGACGTTCCATGTAACGTCAAGAAACGGTTTATCGTTTGACTGTTTC
CAAATTCAACTCCACATAACTCCGCCGAGACGTCTTCAAATCGATGTGTC
CCTGTTCGCCGTGTGTGCGTCCGGCGCCGCTTTACGGAAATCCCACAGAA
ATATCTCACAAACTTTAATCGTATTTAGCCTCGAACGTCGACCCCGACTG
CACATATCTCCTGAATGGCCTGCTACTTAAACGTTACCTGGTAAGATTTA
CCACTGAGGACAGGGAACCTCAAATCTGTTTATGGCCTTAGGGCAGGCAC
ATCTTGCGCGCCCGCGTGTTGCGCCGTGCTGCCTGTCGCTGACCTTGGGG
AAACATGACAATCTTCCATTCCGCTTATATACAATCGGACGAGACAGAAC
GAGGCCGCTGGAGCTGGCAGCGATAACGAAGGTGGAATCAAAGACGACGT
CGAGGAAGGTGGCGTGGCGCAAATCCTCCTCGAAGCCAAAGGCGATGAAG
ATGATCTTCCAAAGAATCTTTTTGACATGGACCGCGTTTTGGAGAACATG
CCCCTGCTCCGCACCGACCACGCATTCTTTGAGACCATGAACAGTGAGTT
AGCTTGGGAAGGACGGGTCGGTAAACCGCTCAAAAGCGAGGAGCACTTGG
CGACGTCATCATTTTTACGTACAAGCTCGTTTGCCCTGTAGCGTAGCATA
TTATATTATTTTTCTCTTCTCGTTTGCCCACAAACTGCAAAGGGCGCCCG
ACGATGGAGAAACTTGTGGAATTTGACGTTTTGGACTAGATTTTCTATTT
TGAAATCCTTGATATACTATACTAGACCGGAAATATACATATATTTCACA
AACTATCTCAGTGAAAACGAAGGTACATTAGTATTTCGAAGTCTGAAGCT
GAATTACTGCTGTCTGCGTCGTAAAAAAATGGTCAGGTTGGCTAGTTGGA
ATAACAAGCGATGATCAGGGTAACCTTTCCTTTCTCCCCCCTCCCACCTC
AGCCCCCGGCGTTGCGATTCGAGTTTCGACCGATGATCCTGTCACACAGC
CTCTGACCATCCGGGATGTGAAAAACGCAAATAAAACTCAGGACGATTCT
CACCTCTTAAGTTAGCATTATACTATTTGATCGGTGTAATCTACAGGATC
TACCCTGTCACTACCCCTGTCTTACATCACGGCATGCCTACCTCGCAGGC
GACGAAACCATCAGTTGCCCATTTGTGCTCTACAAGCCACGCCGAGAACG
ACCAGGGATCGAAGCGGTGGTGCGGTTCGGGAAATCAACTGCAGGACACC
CCGAGGCATGGTCGCCCTCGGTACCTTGTTGCTCTTTTTTGACCGAAAAC
CGCGGTGCTTGTGCGTTCGCAAACCTCGCTCCCGCTGCCGTTTTAGTGCG
ATCCACCAGCCCTGTAGACATGTTCGCGCGGGGGGAAGATACTCTCTCGA
TTGGGAGTACTGCCGTTAGCTTTGGCAAGCTTGTCGCGACGTGGACCTCG
TGTCGACGGCGGCGACTAGACCGCGCTTCTCTCCTCGCCGCCCCCGCCAA
ACGTTTATTCGCACCCCCTATCTCGTCTTAACACCGCAGACCGTGCACGG
CGGGGTCACCGCAATGACGTTCGATAATTTGCTGGGAACGGCTCTCTTCA
TGCACGGCACGTTTCCCGTGTTCACGGCGTACCTCAAGGTGAACTATTAC
TGCTAATTCGAGGACAACTTGGATACTGATCTCGGGCTCATGTTAGCGGG
ACGAGCTCTTCTAGAGGAACGTGTCCCGGCTCTGTGATGCAATTGTGACC
CAAGCAATATTCTTGCCGACCTCCTTCCTGCCCCGACGGCTCGCCGAATC
ATTCGCGTCCAACCCGGTGAAAACCTCAAAACAGGTGGATTACAAGGCCA
TGCTTCCGTGCATGACGACGACCGTGTTGGATGTCACCGTGGACCGCGTT
GAGGGTCGGAAACTGTTCGTGGCGGGACGGCTGAAGAGCTTCGATGGGGA
AGTGCTTTACGCCACCGCGGAGGCGCTGTTCATCAAGCCCAGGGAGGAGC
CGAAGGAGGCAGCACGGGGCGACAAGCAGGATGTGCGCGAGGCGTAGTTG
GACCCTCCAACAGAAGTATTTTGTAGTTAAGCTAGCGAAACTCGTTCCAC
ATGTGGGCAGAATATCATTTATTTTTTGGGGTGTATAAATGGAAAAATTG
TCATCATTCGGTTGCTGGCGGTTGAGTGTGTTTTGGTGATGTTTAGCTGA
CGCCGAAAGAGAGTATCATCTTAAAGCCACGAAAGCGTTGCTATCGTTTA
ACAATTTGATGTGTTTTGTTTTAGTCCGGTCGGTGAGAATATTATTTGTG
TTTCCTGCTTCCTCGTATATGAGCTCGGTTTACTTCATATCTACACCGTA
TCCGTAATCCGTAATGGAAAATCCAACTTCTGTGGTAGCCGCGGACTTGC
GGAGATTTTTGCTCCCTTCCAGGATAGCCTCTCTCCATGACGAGTTCAAT
ACTGTGTCTAAACCAAGCAACAGTGGTACTGACGTCCAGATCTTCAACGT
TTCAGTTTTTTGCTGCGCATTCGCAGTTAAATAGATAAATGTTGTATTTG
ATTTCGATGTAACATCGATCACGAAATATAATCTGCTCCATGAGGCAACT
AATCTTAAAGCTGACTCCAGCGATGGATGCGATTCGTACATGTGTATCTA
GTATTTTATTATTAGCGTTTCAGGCTTCCGTGCGAGTATGTATTTCGCCC
ATAAGAGATCTCACCACCCACTCTCTAAAGTCCGAGAATATGGCAATACC
TAGCCAATCATTGGACCTCTGGACAGAGACAGTTTTTTGTAGAGGTTATA
ATTTGGTTGAAGGATAGCTCTTAGAATGTTCGGATAAATGTTAAAATTCT
GTTTTTGGAATCTGGGGTTTCTAGAAGCGGAGAATAATTCGGATTGCGGG
GAAAGGGGCTGTCTGTCAGAAAGGACGAAAGGGTGAGGAGCCCAACCCAC
CCTATGCCATTCCGTTTGCAAACATGAGGCAAAGATAGAAGTCATCGTCC
TTTTCGGCAACCTTTGCTTTGAGGCGCGTGTTATGCCCCTTGACAGCAGC
AGTATTTTTGCGTGAGCAATCACCTCGACAGTGTCGCAGTTCGCCCTCTC
GAGCGCGATAGGAATGTACATGATTGCTTCTGAAATTCCGCCGAAAGACG
ATGACACGTAGACGTCGATGGTGAATCGTGCGGAGCTTGTTGTAATACTC
CCTGTCAAGTGACCACGTCGCGAATCTGTTGAGGAGGGTATCCACCTTCG
TTTTGAGCAGTCGTTCGTCAAACTCGAGTTTGACTTTCTGTTAGCCGAAC
AGATCTGTGTTGTACGCTGAACCGGAGCCATATCAGTCGTGCGCACCGAC
TGATTTCAACAACGATGTCCGGGCTCCCAGTGGTGGTTCCTACAATGTCC
ACCGTTCATTGATGGCAGGACTCACGTGCTCCACACGTGGTGATTAAAGT
TACTTACTATGATTACATTCTTGAGGTGAAGAAGGAAGCATGACCCATCT
TGAGGGAAAAATCTTCCAGAACGAAAGAGAAAAGAGGCAGCGAAATTCCT
AGAAAGCTGACCAATCAAAACGAAGCAAGTGTCTTTGTAATCAATCTCCG
TAGAACTGCTATTATGATGTAAAGAGACTGTATAGCCTTGATGTTTACTA
GAGTTATAAATTATACGAACACCCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1562:8798..13272-

>mRNA_H-elongata_contig1562.3668.1 ID=mRNA_H-elongata_contig1562.3668.1|Name=mRNA_H-elongata_contig1562.3668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig1562:8798..13272- (Himanthalia elongata Himel1 dioecious)
ATGCCTGAAGTGAGGCAAGAGCTGAGGCGCGTCGCGCTTGAGCATCTGAC
GAAGTCCATACTAGCGATGCCTGAAGTGAGGCAAGAGCTGAGGCGCGTCG
CGCTTGAGCATCTGACGAAGTCCATACTAGCGAACGAGGCCGCTGGAGCT
GGCAGCGATAACGAAGGTGGAATCAAAGACGACGTCGAGGAAGGTGGCGT
GGCGCAAATCCTCCTCGAAGCCAAAGGCGATGAAGATGATCTTCCAAAGA
ATCTTTTTGACATGGACCGCGTTTTGGAGAACATGCCCCTGCTCCGCACC
GACCACGCATTCTTTGAGACCATGAACAAACGAGGCCGCTGGAGCTGGCA
GCGATAACGAAGGTGGAATCAAAGACGACGTCGAGGAAGGTGGCGTGGCG
CAAATCCTCCTCGAAGCCAAAGGCGATGAAGATGATCTTCCAAAGAATCT
TTTTGACATGGACCGCGTTTTGGAGAACATGCCCCTGCTCCGCACCGACC
ACGCATTCTTTGAGACCATGAACAGCGACGAAACCATCAGTTGCCCATTT
GTGCTCTACAAGCCACGCCGAGAACGACCAGGGATCGAAGCGGTGGTGCG
GTTCGGGAAATCAACTGCAGGACACCCCGAGGCGACGAAACCATCAGTTG
CCCATTTGTGCTCTACAAGCCACGCCGAGAACGACCAGGGATCGAAGCGG
TGGTGCGGTTCGGGAAATCAACTGCAGGACACCCCGAGACCGTGCACGGC
GGGGTCACCGCAATGACGTTCGATAATTTGCTGGGAACGGCTCTCTTCAT
GCACGGCACGTTTCCCGTGTTCACGGCGTACCTCAAGACCGTGCACGGCG
GGGTCACCGCAATGACGTTCGATAATTTGCTGGGAACGGCTCTCTTCATG
CACGGCACGTTTCCCGTGTTCACGGCGTACCTCAAGGTGGATTACAAGGC
CATGCTTCCGTGCATGACGACGACCGTGTTGGATGTCACCGTGGACCGCG
TTGAGGGTCGGAAACTGTTCGTGGCGGGACGGCTGAAGAGCTTCGATGGG
GAAGTGCTTTACGCCACCGCGGAGGCGCTGTTCATCAAGCCCAGGGAGGA
GCCGAAGGAGGCAGCACGGGGCGACAAGCAGGATGTGCGCGAGGCGTAGG
TGGATTACAAGGCCATGCTTCCGTGCATGACGACGACCGTGTTGGATGTC
ACCGTGGACCGCGTTGAGGGTCGGAAACTGTTCGTGGCGGGACGGCTGAA
GAGCTTCGATGGGGAAGTGCTTTACGCCACCGCGGAGGCGCTGTTCATCA
AGCCCAGGGAGGAGCCGAAGGAGGCAGCACGGGGCGACAAGCAGGATGTG
CGCGAGGCGTAG
back to top