mRNA_H-elongata_contig15610.3663.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15610.3663.1
Unique NamemRNA_H-elongata_contig15610.3663.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: D7G818_ECTSI (Ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G818_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 1.020e-142
Identity = 246/458 (53.71%), Postives = 296/458 (64.63%), Query Frame = 1 
Query:   22 ATAIGWEKVVSTDGKPYFQNTITRETSWNPPAGWVE----SLSSVATTSVGTHDRSFSEWGGVRAADTPEVQIELPSA----------VANLGTTNQTSHAIVPPPRCVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPP------------------------SILGGANLSAKRIDASRSYE--EQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMSSGGHSVIETGRPDIPPAELVPDSADLYMGADLLNQFFVSWSRDAQGKSPLEVARNEVVGHLTGTGLKVLKNRGGTSVQRYLYLSPNNKQVVWATRASTQGKFSKKGLALQNIAELQCDDGGIRIEMRGEET-ITLKSEALDSLTSEGASILLGVLLADMTGTLLRLEGVNGGSSCSYFPASFVGEVLKVRQAREKKRAAAAA 1272
            A   GWEKV++ DG+PYFQNTIT+ TSW  P GWVE    + S+ A T+V  H   F       AA   E+ +E P+           +  LG    +S    P P+         PGWEKLYT + VPFWTNHN+RTTSWDPP                          LG  +   + +D   + E  E    A+TG P E T +     + +NL A+GR LPEGWEM T DQG  YYVDH+NKRTSWDPPMMSSGG SVI +  PDIPPAELVPDSADLYMGADLLN+FF SW  DAQGKSPLE ARN +V +LTG GLKV K R   ++QR+LYLSP NKQVVWAT+A+++GK SKKGL L  I EL  +D GIR+E RGE + + LKS A+D+LTSEGA+ILLGVLLADMTGT+LRL+GV+GG    Y+PASFV +VL VR+AR +K AA AA
Sbjct:  668 AAEAGWEKVMTADGRPYFQNTITKTTSWQLPEGWVEPGAAAASTEAETTVAGHGSFFKSGXXXSAATVKELGVEAPAETDAVAVAPTPIGRLGGPAASSTRSTPVPKAEAQEAPLPPGWEKLYTEEGVPFWTNHNERTTSWDPPVPAPAPAATPTVVSVVSEVKGMRQESLGAESELFESVDGGGAAEATEAAEAAATGVPVEGTQQ-----VSRNLGADGRPLPEGWEMQTTDQGIPYYVDHLNKRTSWDPPMMSSGGMSVIASELPDIPPAELVPDSADLYMGADLLNRFFGSWMGDAQGKSPLEAARNVIVTYLTGPGLKVTKGRNAPNLQRFLYLSPTNKQVVWATKATSKGKLSKKGLTLDGITELHSEDDGIRVEARGESSPLILKSAAVDTLTSEGATILLGVLLADMTGTMLRLQGVSGGDGSCYYPASFVEDVLAVRRARMEKNAALAA 1120
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A6H5JUP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP4_9PHAE)

HSP 1 Score: 446 bits (1148), Expect = 1.330e-140
Identity = 242/452 (53.54%), Postives = 294/452 (65.04%), Query Frame = 1 
Query:   22 ATAIGWEKVVSTDGKPYFQNTITRETSWNPPAGWVE----SLSSVATTSVGTHDRSFSEWGGVRAADTPEVQIELPSA----------VANLGTTNQTSHAIVPPPRCVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPP-------SILGGANLSAKRIDASRSYEEQKL--------------VASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMSSGGHSVIETGRPDIPPAELVPDSADLYMGADLLNQFFVSWSRDAQGKSPLEVARNEVVGHLTGTGLKVLKNRGGTSVQRYLYLSPNNKQVVWATRASTQGKFSKKGLALQNIAELQCDDGGIRIEMRGEET-ITLKSEALDSLTSEGASILLGVLLADMTGTLLRLEGVNGGSSCSYFPASFVGEVLKVRQAREKKRAAAA 1269
            A   GWEKV++ DG+PYFQNTIT+ TSW  P GWVE    + S+ A T+V +H   F   G   AA   E+ +E P+           +  +G    +S    P P+         PGWEKLYT   VPFWTNHN+RTTSWDPP         + G    AK +       E ++               A+TG P E T +     + +NL A+GR LPEGWEM T DQG  YYVDH+NKRTSWDPPMMSSGG SVI + RPDIPPAELVPDSADLYMGADLLN+FF SW  D QGKSPLE ARN +V +LTG GLKV K R   ++QR+LYLSP NKQVVWAT+A+++GK SKKGL L  I EL  +  GIR+E RGE + + LKS A+D+LTSEGA+ILLGVLLADMTGT+LRL+G++GG    Y+PASFV +VL VR+AR +K AA A
Sbjct:  628 AAEAGWEKVMTADGRPYFQNTITKTTSWQQPEGWVEPGATAASAEAKTAVASHGSFFKSGGRGSAAAVKELGVEAPAETDAVAVAPTPIGRVGGPAASSTRSTPVPKAEAQEAPLPPGWEKLYTEGGVPFWTNHNERTTSWDPPVPAPAATPTMVGVVSEAKGMRQESLGAESEVFESVDGDGDGGAVEAAATGVPVEGTQQ-----VSRNLGADGRPLPEGWEMQTTDQGIPYYVDHMNKRTSWDPPMMSSGGMSVIASERPDIPPAELVPDSADLYMGADLLNRFFGSWMGDNQGKSPLEAARNVIVAYLTGPGLKVTKGRNAPNLQRFLYLSPTNKQVVWATKATSKGKLSKKGLTLDGITELHSEHDGIRVEARGESSPLVLKSAAVDTLTSEGATILLGVLLADMTGTMLRLQGISGGDGSCYYPASFVEDVLAVRRARMEKNAALA 1074
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A409YM26_9AGAR (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409YM26_9AGAR)

HSP 1 Score: 84.0 bits (206), Expect = 1.270e-13
Identity = 57/211 (27.01%), Postives = 86/211 (40.76%), Query Frame = 1 
Query:   34 GWEKVVSTDGKPYFQNTITRETSWNPPAGWVESLSSVATTSVGTHDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMM 666
            GWE+ V   G+ Y+ +  TR+T+W+ P G     +S   TSV               A TP       ++ +     +Q+ +A +P P           GWE+  TA+  P++ +H+ RTT+W  P                                + T  P S +I   ++ N   LP GWEM     G VY+VDH  + TSWD P +
Sbjct:  247 GWERRVDPQGRTYYVDHNTRQTTWHRPGG----TTSARPTSV--------------TAQTPSRSSTTIASPSXXXXXSQSPYADIPLPL----------GWEERRTAEGRPYFVDHHTRTTTWTDPR-------------------------------QATQPPPSAAIRPAMNPNLGPLPSGWEMRLTSTGRVYFVDHNTRTTSWDDPRL 398
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A3B5K7C1_TAKRU (Yes1 associated transcriptional regulator n=1 Tax=Takifugu rubripes TaxID=31033 RepID=A0A3B5K7C1_TAKRU)

HSP 1 Score: 81.3 bits (199), Expect = 3.810e-13
Identity = 56/183 (30.60%), Postives = 85/183 (46.45%), Query Frame = 1 
Query:  166 HDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAP-GWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMSSGGHSVIETGRPDI 711
            H R  S  GGV ++ TP   I   S+ A+L   + ++ A       +    V  P GWE   T     ++ NH D+TT+W  P I    + +A+R  A        L     +P++P ++P +     N+      LPEGWE      G VYY+DHINK T+W  P + S   ++ +   P+I
Sbjct:   65 HSRQASSDGGVCSSLTPH-HIRAHSSPASLPVNSLSAQAPDVAAAPIIPDDVPLPHGWEMAKTPTGQRYFLNHLDKTTTWHDPRIAQLQSAAAQRPIAGTPVHTHSL----SNPAQPATQPQN-----NMSPETGPLPEGWEQAVTADGEVYYIDHINKTTTWVDPRLGSTLSNLSQKMNPNI 237
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A6J2TPX0_DROLE (transcriptional coactivator yorkie isoform X1 n=2 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TPX0_DROLE)

HSP 1 Score: 80.9 bits (198), Expect = 4.690e-13
Identity = 49/164 (29.88%), Postives = 75/164 (45.73%), Query Frame = 1 
Query:  184 EWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMSSG 675
            E  G+      EV I  PS         Q S+ +V P +     G   PGWE+  T D   ++ NH  +TT W+ P I        +R+ A R  +   L        + T +  S SI +N+      LP+GWE    + G +Y+++HI++ TSW+ P + SG
Sbjct:  177 EIDGMNTCIGQEVPISAPSI-----HKKQRSYDVVSPIQLQSQLGALPPGWEQAKTNDGQIYYLNHTTKTTQWEDPRIQ--YRQQQQRVIAERIKQNDLL--------QSTKQSTSASISENIGP----LPDGWEQAVTESGDIYFINHIDRTTSWNDPRIQSG 321
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: Q4SFS1_TETNG (Chromosome 7 SCAF14601, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SFS1_TETNG)

HSP 1 Score: 80.1 bits (196), Expect = 9.600e-13
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:  166 HDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAP-GWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMS 669
            H R  S  GGV  + TP   I   S+ A+L   + +S A       +    V  P GWE   T     ++ NH D+TT+W  P I    + +A+R  AS       L     +P++PT++P +      +      LPEGWE      G VYY+DHINK T+W  P ++
Sbjct:   65 HSRKASSDGGVCNSLTPH-HIRAHSSPASLPVNSLSSQAPDVAATPIIPDDVPLPHGWEMAKTPTGQRYFLNHLDKTTTWHDPRIAQLQSAAAQRPIASTPVHTHSL----SNPAQPTTQPQNS-----ISPEPGPLPEGWEQAVTADGEVYYIDHINKTTTWVDPRLA 223
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A6G1QWS8_9TELE (Transcriptional coactivator YAP1 n=2 Tax=Anabantaria TaxID=1489892 RepID=A0A6G1QWS8_9TELE)

HSP 1 Score: 79.3 bits (194), Expect = 1.730e-12
Identity = 52/169 (30.77%), Postives = 78/169 (46.15%), Query Frame = 1 
Query:  166 HDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAP-GWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMS 669
            H R  S  GGV  + TP   +   S+ A+L   + ++ A       +    V  P GWE   T     ++ NH D+TT+W  P           R+   +S   Q  + ST   +   S P+  +  QN++ +   LPEGWE     +G VYY+DHINK T+W  P ++
Sbjct:   65 HSRQASSDGGVCGSLTPH-HVRAHSSPASLPVNSLSTQATDVAATPIIPDDVPLPHGWEMAKTPTGQRYFLNHLDKTTTWHDP-----------RLSQLQSAATQHPIPSTPVHAHSLSNPVPTTQPQNINPDTGPLPEGWEQAVTAEGEVYYIDHINKTTTWVDPRLA 221
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: B3MDX2_DROAN (Uncharacterized protein n=6 Tax=ananassae subgroup TaxID=32347 RepID=B3MDX2_DROAN)

HSP 1 Score: 78.6 bits (192), Expect = 3.640e-12
Identity = 50/160 (31.25%), Postives = 77/160 (48.12%), Query Frame = 1 
Query:  220 VQIELPSAVANLGTTNQTSHA------IVPPPRCVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPPSIL--GGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMSSG 675
            ++++  S V ++  T QT H       +V P +     G   PGWE+  T D   ++ NH  +TT W+ P I      NL A+RI       +Q  V  T      T +  + +I  NL      LP+GWE    + G +Y+++HI++ TSW+ P M SG
Sbjct:  226 IELDGMSMVQDMPMTTQTVHKKQRSYDVVSPIQLQLLRGALPPGWEQAKTNDGQIYYLNHTTKTTQWEDPRIQFRQQQNLMAERI-------KQNDVLQT------TKQTTTSAIANNLGP----LPDGWEQAVTETGDIYFINHIDRTTSWNDPRMQSG 368
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A4Z2AZA4_9TELE (Uncharacterized protein n=4 Tax=Takifugu TaxID=31032 RepID=A0A4Z2AZA4_9TELE)

HSP 1 Score: 78.6 bits (192), Expect = 4.030e-12
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:  166 HDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAP-GWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMS 669
            H R  S  GGV ++ TP   I   S+ A+L   + ++ A       +    V  P GWE   T     ++ NH D+TT+W  P I    + +A+R  A        L     +P++P ++P +     N+      LPEGWE      G VYY+DHINK T+W  P ++
Sbjct:   65 HSRQASSDGGVCSSLTPH-HIRAHSSPASLPVNSLSAQAPDVAAAPIIPDDVPLPHGWEMAKTPTGQRYFLNHLDKTTTWHDPRIAQLQSAAAQRPIAGTPVHTHSL----SNPAQPATQPQN-----NMSPETGPLPEGWEQAVTADGEVYYIDHINKTTTWVDPRLA 223
[Close]
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Match: A0A3B4ZTA6_9TELE (Yorkie homolog n=13 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4ZTA6_9TELE)

HSP 1 Score: 77.8 bits (190), Expect = 5.580e-12
Identity = 51/169 (30.18%), Postives = 75/169 (44.38%), Query Frame = 1 
Query:  166 HDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPRCVGGCGVHAP-GWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRIDASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTNDQGSVYYVDHINKRTSWDPPMMS 669
            H R  S  GGV  + TP   +   S+ A+L   + ++ A       +    V  P GWE   T     ++ NH D+TT+W  P           R+   +S   Q  ++ T   +   S P   +  QN++     LPEGWE      G VYY+DHINK T+W  P ++
Sbjct:   65 HSRQASSDGGVCGSLTPH-HVRAHSSPASLPVNSLSTQAADVATTPIIPDDVPLPHGWEMAKTPTGQRYFLNHRDKTTTWHDP-----------RLSQLQSAAAQHPISGTPVHAHSLSNPAPTTQPQNINPETGPLPEGWEQAVTADGEVYYIDHINKTTTWVDPRLA 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15610.3663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G818_ECTSI1.020e-14253.71Ubiquitin-protein ligase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JUP4_9PHAE1.330e-14053.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A409YM26_9AGAR1.270e-1327.01HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A3B5K7C1_TAKRU3.810e-1330.60Yes1 associated transcriptional regulator n=1 Tax=... [more]
A0A6J2TPX0_DROLE4.690e-1329.88transcriptional coactivator yorkie isoform X1 n=2 ... [more]
Q4SFS1_TETNG9.600e-1332.54Chromosome 7 SCAF14601, whole genome shotgun seque... [more]
A0A6G1QWS8_9TELE1.730e-1230.77Transcriptional coactivator YAP1 n=2 Tax=Anabantar... [more]
B3MDX2_DROAN3.640e-1231.25Uncharacterized protein n=6 Tax=ananassae subgroup... [more]
A0A4Z2AZA4_9TELE4.030e-1231.36Uncharacterized protein n=4 Tax=Takifugu TaxID=310... [more]
A0A3B4ZTA6_9TELE5.580e-1230.18Yorkie homolog n=13 Tax=Percomorphaceae TaxID=1489... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15610contigH-elongata_contig15610:310..6157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue5.9e-124
Seed eggNOG ortholog2880.D7G818
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-06_009830.1
Exons9
Model size1272
Cds size1272
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929920.4621537-CDS-H-elongata_contig15610:309..4791622929920.4621537-CDS-H-elongata_contig15610:309..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 310..479 +
1691679208.8850217-CDS-H-elongata_contig15610:309..4791691679208.8850217-CDS-H-elongata_contig15610:309..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 310..479 +
1622929920.476636-CDS-H-elongata_contig15610:964..10581622929920.476636-CDS-H-elongata_contig15610:964..1058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 965..1058 +
1691679208.898627-CDS-H-elongata_contig15610:964..10581691679208.898627-CDS-H-elongata_contig15610:964..1058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 965..1058 +
1622929920.487854-CDS-H-elongata_contig15610:1951..22671622929920.487854-CDS-H-elongata_contig15610:1951..2267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 1952..2267 +
1691679208.9058495-CDS-H-elongata_contig15610:1951..22671691679208.9058495-CDS-H-elongata_contig15610:1951..2267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 1952..2267 +
1622929920.500789-CDS-H-elongata_contig15610:2695..28271622929920.500789-CDS-H-elongata_contig15610:2695..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 2696..2827 +
1691679208.9133902-CDS-H-elongata_contig15610:2695..28271691679208.9133902-CDS-H-elongata_contig15610:2695..2827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 2696..2827 +
1622929920.5137885-CDS-H-elongata_contig15610:3428..35861622929920.5137885-CDS-H-elongata_contig15610:3428..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 3429..3586 +
1691679208.9234514-CDS-H-elongata_contig15610:3428..35861691679208.9234514-CDS-H-elongata_contig15610:3428..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 3429..3586 +
1622929920.6202497-CDS-H-elongata_contig15610:4278..43441622929920.6202497-CDS-H-elongata_contig15610:4278..4344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 4279..4344 +
1691679208.931369-CDS-H-elongata_contig15610:4278..43441691679208.931369-CDS-H-elongata_contig15610:4278..4344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 4279..4344 +
1622929920.6347969-CDS-H-elongata_contig15610:4598..47091622929920.6347969-CDS-H-elongata_contig15610:4598..4709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 4599..4709 +
1691679208.9395585-CDS-H-elongata_contig15610:4598..47091691679208.9395585-CDS-H-elongata_contig15610:4598..4709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 4599..4709 +
1622929920.693628-CDS-H-elongata_contig15610:5671..58531622929920.693628-CDS-H-elongata_contig15610:5671..5853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 5672..5853 +
1691679208.9480343-CDS-H-elongata_contig15610:5671..58531691679208.9480343-CDS-H-elongata_contig15610:5671..5853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 5672..5853 +
1622929920.7262268-CDS-H-elongata_contig15610:6114..61571622929920.7262268-CDS-H-elongata_contig15610:6114..6157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 6115..6157 +
1691679208.9566684-CDS-H-elongata_contig15610:6114..61571691679208.9566684-CDS-H-elongata_contig15610:6114..6157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15610 6115..6157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15610.3663.1prot_H-elongata_contig15610.3663.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15610 310..6157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15610.3663.1

>prot_H-elongata_contig15610.3663.1 ID=prot_H-elongata_contig15610.3663.1|Name=mRNA_H-elongata_contig15610.3663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=424bp
MLKPVREATAIGWEKVVSTDGKPYFQNTITRETSWNPPAGWVESLSSVAT
TSVGTHDRSFSEWGGVRAADTPEVQIELPSAVANLGTTNQTSHAIVPPPR
CVGGCGVHAPGWEKLYTADHVPFWTNHNDRTTSWDPPSILGGANLSAKRI
DASRSYEEQKLVASTGSPSEPTSRPLSGSIVQNLDANGRKLPEGWEMHTN
DQGSVYYVDHINKRTSWDPPMMSSGGHSVIETGRPDIPPAELVPDSADLY
MGADLLNQFFVSWSRDAQGKSPLEVARNEVVGHLTGTGLKVLKNRGGTSV
QRYLYLSPNNKQVVWATRASTQGKFSKKGLALQNIAELQCDDGGIRIEMR
GEETITLKSEALDSLTSEGASILLGVLLADMTGTLLRLEGVNGGSSCSYF
PASFVGEVLKVRQAREKKRAAAAA
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mRNA from alignment at H-elongata_contig15610:310..6157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15610.3663.1 ID=mRNA_H-elongata_contig15610.3663.1|Name=mRNA_H-elongata_contig15610.3663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5848bp|location=Sequence derived from alignment at H-elongata_contig15610:310..6157+ (Himanthalia elongata Himel1 dioecious)
ATGTTGAAACCCGTGCGTGAAGCGACGGCGATCGGGTGGGAGAAGGTGGT
GTCCACTGACGGCAAGCCGTACTTCCAGAACACGATTACCAGGGAGACTA
GCTGGAACCCGCCGGCAGGGTGGGTGGAGTCATTGTCCTCCGTGGCAACG
ACCTCGGTGGGCACGCATGAGTTCAAGATCGACGAAATCGACGCGGGGGT
GCGGAAGGCTACGGAGAACGCGACGTACGAGGCAGAGTCATCAGGGGGGA
AGGGTACAGGGGCTGCCATTCTTTCGCGCGAGGATGCCGGTGAGACTTTC
TTTTGTGTGTATGTGCTGGCGTGAAAAAGAGCGAGTGGCAACGCTTGAGC
TTGTTTTGTTTCAGGCTCTTTTGGAGGTGTTTTATCTCTTTGTGTACTCT
TTTGGTACGTGGTGGACATGACGTAACGTGACGCAAGTCTTCCACGTTGC
GTTGGACCGCAATGCACTACGCTCCAGGAGCCTCCACGTTTCCTACGGAT
ATCTCTCGCCAACATTCGTCCGCTCAGGGTGAGGCGGGGCCACAAGAGCC
GCCGCTCCCTCCAGGTGACTTGATTTTAACCCCTATTAAACTCGATCTGT
TATTTATACACTAAATTCAATACAAAAATTGAAACCCAGTTCCGAAAGGG
TTAAGTAGGTCCTTTTCTGAGTGGGGAGGGGTTAGAGCGGCGGATACGCC
AGAAGTCCAAATCGAGTTACCGTCTGCTGTGGCAAATCTTGGAACAACCG
TGCTGCCGCTGCTGCAATGTCGTAGTATAATAGGACGACTTTTGGAGTCG
TCTTTGTCCGCGTGTGCCTTGATGAAAACGATAAAAGCCTCGTTTTCGTG
AAGATTTGGCCCTGTTTTCCCTCGAGATGATAGCTTTTGGGAAAACGATG
ACAGCAGCAGAACGTTTCAAGTGACCTTTTTTTTTAGAGTTGGTGAGGGC
GAGCACGAAACAAGAACGCGGCGCACCGCCTCCCCTCGTGTGGGAATCGC
ATCGGGGTGAGGGGGGTGAGGCTCACAGCGTGGCATGAGGTAAAAGAAGA
GGAGGGGGGGTTAGGTTAATTGGCGCTTGAAAGAAGAGGACAAGGCATCC
TAAAAGATGGTGAAAGTGCCAGAGAATGCTGCTCTTCCGCTAGAGGTTGC
TCTTGGGCAGAATGGCGAGGTGCTCTTCTAGCACCTGTAATATTGACCAA
TTGACTCATCTCATGATTTGGGTGACCCTGCTTGCAGTAGAGGAGCCAAG
GATCTATACAGAGTTACCTTTTTTTCCATTTGAATAATACCACCTCTCTT
AAGGATAGTGGTCTGACTGTGGTGCTGGGCTGTCTGTTGTTTTATTCGTT
ATTTTTTTTCTTTTCTCTTATCATGCAGTCTTTAATGGATTTATGTGTGT
GTATGTGTTTTGTGTGTATTTATTAAATTGCACATAAATGCGCAATCCGG
TCCTGTCATTCTAGTCCTTCTAGGCTATTGTCGAATCGATCCTTCCAGTG
TGTGTGTGTGTGTGTGTATGTGTATGTGTGTGTATTTATACACCTTTTCG
ATGGTTTTTTCTTCGTGTTTTCCCATCTAGTTCAGCGAACCACAAGCTGT
ATTTTGATACAAAAGAAATAGCTCCAATCGACATAATGTAAGAACCAAAC
ATCCCACGCTATTGTGCCTCCCCCACGCTGTGTTGGTGGGTGCGGGGTCC
ATGCTCCAGGATGGGAGAAGCTGTACACCGCGGACCACGTTCCCTTCTGG
ACAAATCACAACGACCGAACCACAAGCTGGGACCCGCCTTCGATCCTAGG
GGGCGCGAACTTATCAGCCAAACGCATCGATGCTTCCCGCTCTTACGAAG
AGCAGAAACTAGTCGCGTCTACGGGCTCGCCGAGCGAACCGACTTCTCGG
CCTCTCTCTGGCAGCATCGTCCAGAACCTGGATGCTAATGGGAGGAAGCT
TCCGGAAGGTGACGCTAATGGGAGGCATGGAGGTTTAGTCAGACGATGCG
CGCCCCCCCTCCCCAATAAGTGTATGACTGGTGTTGTAATTGCCTTAAGG
AAGGCGAGGGACCATCCGGTTAATATTTGTGCCTCGGGGGAGGGGGGGGG
AGTTGCACATGAAAGCTGGGATGTCGCGAGCCGATTTTATCTATGAAAAC
CCGCGAAAGTGAAGCTGGTCTAGGTGATGCTGCGGTTGAATAGGCCACCC
TCGAGTGGAAAACGCTTTGTGTGATGAAACCGATGTGTTTGCTGGTGTGT
GCGTGTACGTGTGCTTGTACCCCGCCCCTCTCCTTCCAATGATCTAAAGG
TAGCAGCTAAGCTAAAGCATGCAAGCAAAGCATCAAGACCCTCCCTCGCC
CTCCCCCTTTCATGTCTCCACCCCTCCGGTATTCAGGCTGGGAAATGCAC
ACGAACGACCAAGGTTCCGTGTACTACGTTGATCACATCAACAAGCGGAC
GTCTTGGGATCCGCCGATGATGTCATCTGGAGGACACAGCGTCATCGAGA
CGGGGCGACCAGACATCCGTGAGTATATACTGTATCGCTTTGTACGGGAC
GATGATGGTATGGGAATATGGGAAGCTTCTTGTGCCATATGGACCTATGG
AGGAAGGGAAGAGGTGGGGAACGAATGAACATCCCCTCGCTTTATTACGG
TATCAACATTTCTATGCCCAAAGCAATATGATGATCTCTGTCTCTCTCGA
CAACAGTCAGTAAAGTGGTCTCGTTGGTTTGCCATATTTCCTCATCCGAC
GTAGTAGGAACAATGTTCGTACGATTATCTTCACTCTTCAGTATTAGTGA
TAAGAAAACTCGTCGGGGAAGTGATAATTGTGGCTACGTAGTCACAAATT
ATTTATGACTACAGGAGAAAATTGCAAAAAACGTTGATTTCATGTAGAGT
AAAATAGCCGTTTCTCTGAAACCTAAAGATACTGGCTGACCCAACCCGCC
GCCAACTCTAACCCACATACCCCCATCCATGGGGCTCTGAGAACCTTAAT
TTGACGGTGGAAACCCCGAGGCCTTATATGTTCCCGTAGTCACAATAATC
AATTTCCAACTTGTCGACCCCCTCCCCCCCCTTCATTATCTCTACAACGC
CTTCAACCGGCCTCCGCAGCCCCCGCGGAATTGGTCCCGGACTCCGCCGA
CCTATACATGGGCGCCGATCTCCTCAACCAATTTTTTGTGTCGTGGTCAA
GAGACGCGCAAGGAAAATCTCCTCTCGAGGTAGCTCGAAACGAGGTTGTG
GGGCATCTAACGGGTACTGGACTCAAGGTAGGGGCCCCGCTTTAGCTGCC
CTAGAAAACCCTCGGAGTCCACACTCCAAAGAGAGGAGACGTTTCACCTA
GTTTTTTTTTTGAGGTTTGATACCCAATTATTTTTGTTGAGGCGGAGAAG
ATACCGAATTGAGACTCAATGATACCGAATTGAGACCCAATGATACCGAA
TTGAGACCCAATAATACCGAATTGAGACCCAATGATACCATATTGAGACC
CAATGATACCATATTGAGACCCAATGATACTGTATTGAGACTCAATGATA
CCGTACTGGATGTAAAAGCTGGGGGCGAAAGCAGGCGATCGGTACATGTA
CTGCTCTTTTCGAATCAGATTTACGATGGAAAGCGTGCAACGCTGTATGT
ATGTCGCGCACATGTCATGTGGTAAGTATTAATAGACAGTTTGCCTTGAC
GGGTGGATTTTAAGTTTTATATTGAATTTAGTGTGTAAAAAACAGATCGA
GGTTCCATAGGGGTTAAAAGGTCAGGCGGGGTCGCCGGAGGGTGAAAGCC
GACGGCATATCTAGTTGGTTGGTTTGTCGTGTAGCCCCCAGTAGCCCAGA
TAACCGAGGCACACGTCGTCCATGAAACCCCGTTGAGATGTGGTGAGTGG
ATTACGCGTGTCGCCTGATTTATCTTCCCGTAGCTCGACTAACTGTCGCC
GCGCTTGGCCCGTGAACAGGTGTTGAAAAACCGTGGTGGAACGAGTGTTC
AGCGCTACTTGTACCTCAGCCCCAACAACAAGCAGGTGTGGCACACGCGC
GCGCTGGCGCTGTTGGCGGGTTTCTATTTTGTTGGGAAGTTTATCCGTGC
GGGTGGGAAGGGAAGCGGCGCGCGCAGTATTACTCGACCATGTTTTGTTC
TTACTCTGCGCGAGCGATCGATATGCCTTGTTTTTTTTGCTGTTTTGTTG
AGGAGAAGGGGGGGGTTGAAAGGAACGGGATTTCACCTGTCTTTTGAGGG
AGTTCCCAAGATGCAGCGTGTGGCGGGATGGACGCGCAGGTAGTTTGGGC
TACGAGGGCGTCAACACAGGGCAAGTTTAGCAAGAAGGGTCTGGCGCTGC
AAAACATCGCCGAGCTGCAGTGCGATGACGGCGGCATAAGGATCGAGATG
GTGAGTCAGAGCCATTTCGTCGTTACCAACATAAATCATGACGGGGTCAA
AATAATGCGATATCTCGGGGATGGGTAATAGGCATCTCCGCTATATTTTA
GCAGGAGCTGTGCTCACGGCATCAGCGAACACGACGGATTTGAAAATATC
TCGCCCTATACAAGCTTCCCGAAATCCTGCTTGAACTTGAGGGGTTATTG
CTGTGTGCCTGTGTTGACGTCCCCCGGGTGTTTTCTATTTACTAAAATAC
TATACTATACTATACTATACTATACTATACTATACTATACTATACTATAC
TATACTATACTATACTATGCTATGCTATGCTATACTATGCTATGCTATGC
TATGCTATGCTATGCTATGCTATGCTATGCTATGCTATATGCTATGCTAT
GCTATGCTATGCTATGCTATGCTATGCTATGCTATGCTATGCTATGCTAT
GCTATACTATACTCTACTATACTCTACTACACTAAATACTATACTATATA
AAAGTATTGAAGGGGATTCGAGGAGCTTCGCGTGCGATTTTGTCGATTGT
GATGAACAACAACATGCCGTGTAGCTATTAATAAAGGCTTTCTCTGCTTG
TGCGGTTAACGCTCTATCGTGTCGCAGCGCTCCGGCTTCTCCCCCGCCTC
GTTTTCATTTTCGTGTATTCGTTGANNNNNNNNNNCGATCTGTTCTCTTA
AAGACGACGCCAGAGCCGACTAAGCCATTCCTCTCCGAAGCCACTCTTCT
TTCCAGGAGTCGTTTATGGGTGTTCTAGAGTTGCGCTTTCTACACCCTTT
CCTGCTTGTCATGTTGATGACGTCATGATGATGGTGATGTTGAGGATGAC
GGTATGGGTCGAGAGTTGGGACGTTCCATTAAAAACTTAAATTAAAAAGT
CCGCGCGCGGTGAATGACAATGGCCCTCTCGCGTGGCGTCACGAACCGCG
TGTTCCGATCAGAGAGGCGAGGAGACCATCACGCTCAAGAGTGAAGCGCT
CGACTCGCTCACGTCCGAGGGAGCCAGTATTCTGCTCGGCGTATTGTTGG
CGGACATGACGGGCACCTTGCTGAGGCTAGAGGGGGTTAACGGTGGCAGT
TCCTGCAGCTACTTCCCGGCGTCTTTTGTCGGAGAAGTGCTCAAGTAAGC
GCGCGTTTACCGCATCCGCCCTTCCTTGATTTCAAGGTTTGGACTCGCGA
GTGATCCGCGCGCGCTAAGACGTGTTTTTGTTTCCTCTAGTGTGTCTTGA
AGAACTGGTTCTTCCGCGCAGCCGAGTTGTAGCTGACATCTAACTTTATC
TTCTCTGGGGGCGATCATGACTGACGCTAAAGCAGCACGGGTATCCTGTT
GAAAGTATCGCCTCGTGATTTTTTTATTGTCTGCCGTTGACGCTTTTGTT
GGCAGGGTGCGACAAGCGAGAGAGAAAAAAAGAGCTGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at H-elongata_contig15610:310..6157+

>mRNA_H-elongata_contig15610.3663.1 ID=mRNA_H-elongata_contig15610.3663.1|Name=mRNA_H-elongata_contig15610.3663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2544bp|location=Sequence derived from alignment at H-elongata_contig15610:310..6157+ (Himanthalia elongata Himel1 dioecious)
ATGTTGAAACCCGTGCGTGAAGCGACGGCGATCGGGTGGGAGAAGGTGGT
GTCCACTGACGGCAAGCCGTACTTCCAGAACACGATTACCAGGGAGACTA
GCTGGAACCCGCCGGCAGGGTGGGTGGAGTCATTGTCCTCCGTGGCAACG
ACCTCGGTGGGCACGCATGAATGTTGAAACCCGTGCGTGAAGCGACGGCG
ATCGGGTGGGAGAAGGTGGTGTCCACTGACGGCAAGCCGTACTTCCAGAA
CACGATTACCAGGGAGACTAGCTGGAACCCGCCGGCAGGGTGGGTGGAGT
CATTGTCCTCCGTGGCAACGACCTCGGTGGGCACGCATGATAGGTCCTTT
TCTGAGTGGGGAGGGGTTAGAGCGGCGGATACGCCAGAAGTCCAAATCGA
GTTACCGTCTGCTGTGGCAAATCTTGGAACAACCTAGGTCCTTTTCTGAG
TGGGGAGGGGTTAGAGCGGCGGATACGCCAGAAGTCCAAATCGAGTTACC
GTCTGCTGTGGCAAATCTTGGAACAACCAACCAAACATCCCACGCTATTG
TGCCTCCCCCACGCTGTGTTGGTGGGTGCGGGGTCCATGCTCCAGGATGG
GAGAAGCTGTACACCGCGGACCACGTTCCCTTCTGGACAAATCACAACGA
CCGAACCACAAGCTGGGACCCGCCTTCGATCCTAGGGGGCGCGAACTTAT
CAGCCAAACGCATCGATGCTTCCCGCTCTTACGAAGAGCAGAAACTAGTC
GCGTCTACGGGCTCGCCGAGCGAACCGACTTCTCGGCCTCTCTCTGGCAG
CATCGTCCAGAACCTGGATGCTAATGGGAGGAAGCTTCCGGAAGAACCAA
ACATCCCACGCTATTGTGCCTCCCCCACGCTGTGTTGGTGGGTGCGGGGT
CCATGCTCCAGGATGGGAGAAGCTGTACACCGCGGACCACGTTCCCTTCT
GGACAAATCACAACGACCGAACCACAAGCTGGGACCCGCCTTCGATCCTA
GGGGGCGCGAACTTATCAGCCAAACGCATCGATGCTTCCCGCTCTTACGA
AGAGCAGAAACTAGTCGCGTCTACGGGCTCGCCGAGCGAACCGACTTCTC
GGCCTCTCTCTGGCAGCATCGTCCAGAACCTGGATGCTAATGGGAGGAAG
CTTCCGGAAGGCTGGGAAATGCACACGAACGACCAAGGTTCCGTGTACTA
CGTTGATCACATCAACAAGCGGACGTCTTGGGATCCGCCGATGATGTCAT
CTGGAGGACACAGCGTCATCGAGACGGGGCGACCAGACATCCGCTGGGAA
ATGCACACGAACGACCAAGGTTCCGTGTACTACGTTGATCACATCAACAA
GCGGACGTCTTGGGATCCGCCGATGATGTCATCTGGAGGACACAGCGTCA
TCGAGACGGGGCGACCAGACATCCCCCCCGCGGAATTGGTCCCGGACTCC
GCCGACCTATACATGGGCGCCGATCTCCTCAACCAATTTTTTGTGTCGTG
GTCAAGAGACGCGCAAGGAAAATCTCCTCTCGAGGTAGCTCGAAACGAGG
TTGTGGGGCATCTAACGGGTACTGGACTCAAGCCCCCGCGGAATTGGTCC
CGGACTCCGCCGACCTATACATGGGCGCCGATCTCCTCAACCAATTTTTT
GTGTCGTGGTCAAGAGACGCGCAAGGAAAATCTCCTCTCGAGGTAGCTCG
AAACGAGGTTGTGGGGCATCTAACGGGTACTGGACTCAAGGTGTTGAAAA
ACCGTGGTGGAACGAGTGTTCAGCGCTACTTGTACCTCAGCCCCAACAAC
AAGCAGGTGTTGAAAAACCGTGGTGGAACGAGTGTTCAGCGCTACTTGTA
CCTCAGCCCCAACAACAAGCAGGTAGTTTGGGCTACGAGGGCGTCAACAC
AGGGCAAGTTTAGCAAGAAGGGTCTGGCGCTGCAAAACATCGCCGAGCTG
CAGTGCGATGACGGCGGCATAAGGATCGAGATGGTAGTTTGGGCTACGAG
GGCGTCAACACAGGGCAAGTTTAGCAAGAAGGGTCTGGCGCTGCAAAACA
TCGCCGAGCTGCAGTGCGATGACGGCGGCATAAGGATCGAGATGAGAGGC
GAGGAGACCATCACGCTCAAGAGTGAAGCGCTCGACTCGCTCACGTCCGA
GGGAGCCAGTATTCTGCTCGGCGTATTGTTGGCGGACATGACGGGCACCT
TGCTGAGGCTAGAGGGGGTTAACGGTGGCAGTTCCTGCAGCTACTTCCCG
GCGTCTTTTGTCGGAGAAGTGCTCAAAGAGGCGAGGAGACCATCACGCTC
AAGAGTGAAGCGCTCGACTCGCTCACGTCCGAGGGAGCCAGTATTCTGCT
CGGCGTATTGTTGGCGGACATGACGGGCACCTTGCTGAGGCTAGAGGGGG
TTAACGGTGGCAGTTCCTGCAGCTACTTCCCGGCGTCTTTTGTCGGAGAA
GTGCTCAAGGTGCGACAAGCGAGAGAGAAAAAAAGAGCTGCTGCTGCTGC
TGGTGCGACAAGCGAGAGAGAAAAAAAGAGCTGCTGCTGCTGCT
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