mRNA_H-elongata_contig15609.3662.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI) HSP 1 Score: 655 bits (1691), Expect = 9.990e-231 Identity = 350/453 (77.26%), Postives = 378/453 (83.44%), Query Frame = 1
Query: 1 RTLFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDDDTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSGNDGSMLQLGNLDDHDPYKAALDEDQEEXXXXXXDGDYAPGAQEGSDAESSSESDVDGGDSDSATPKTSKRSGTGIKSKKEPKKRMKASESRSSKPGSKKRVKKDKNAPKGASSSYMQFSQAKRAEV 1359
+TLFDLN+K++SQCVMPGVKKSNDVELQLHESDATDQ EDTLVAIRVTLPEKD+DT+E SPAE+LQM VMERANIHDVKGKVLVEFNESQGTFDFPRGRYS+EMYS FMRMHG+RYDYKIQYNDISKLFLLEKPDERYVAFV+SLDKPIRQGQQKYQHLVLRTTKDEATI VNMS+EDLQ+KY+ NLNSEM GPLHNLIAKIFKVL++KPVYVTGKFSS NGAKAVKCALGANEG+LYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGET KPYVFSGIDR+EY+SLYSFLSTKKLRIKNIK+SGND +MLQLG+LDDHDPYKAALD+DQ E X D A + KR GTG K +K KKDK+APKGA S++MQFSQA RA+V
Sbjct: 119 KTLFDLNIKDVSQCVMPGVKKSNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEATITVNMSAEDLQKKYDSNLNSEMIGPLHNLIAKIFKVLSNKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKLRIKNIKESGNDNAMLQLGDLDDHDPYKAALDDDQGEDEESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRAHKTSKKRPGTGSAKKGPTQKXXXXXXXXXXXXXXXXXAKKDKDAPKGAMSAFMQFSQANRAQV 571
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A6H5L083_9PHAE (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L083_9PHAE) HSP 1 Score: 597 bits (1538), Expect = 4.210e-210 Identity = 338/497 (68.01%), Postives = 370/497 (74.45%), Query Frame = 1
Query: 1 RTLFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDDDTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAK----IFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSGNDGSMLQLGNLDDHDPYKAALDEDQEEXXXXXXDGDYAPGAQEGSDAESSSESDVDGG------------------------DSDSATPKTSKRS-GTGIKSKKEPKKRM---------------KASESRSSKPGSKKRVKKDKNAPKGASSSYMQFSQAKRAEV 1359
RTLFDLN+K++SQCVMPGVKKSNDVELQLHESDATDQ EDTLVAIRVTLPEKD+DT+E SPAE+LQM VMERANIHDVKGKVLVEFNESQGTFDFPRGRYS+EMYS FMRMHG+RYDYKIQYNDISKLFLLEKPDERYVAFV+SLDKPIRQGQQKYQHLVLRTTKDEA I VNMS+EDLQ+KY+ NLNSEM GPLHNL+AK IFKVL+ KPVYVTGKFSS NGAKAVKCALGANEG+LYPLNK GAGVTRNFDLCVAPKSVAGET KPYVFSGIDR+EY+SLYSFLSTKKLRIKNIK+ GND +MLQLG+LDDHDPYKAALD+D+ E D DYAP A+ GSDA DSD KTSK+ GTG K +K++ +AS SSKP KKR KKDK+APKGA S++MQFSQA RA+
Sbjct: 3 RTLFDLNIKDVSQCVMPGVKKSNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEAAITVNMSAEDLQKKYDSNLNSEMIGPLHNLVAKVPKLIFKVLSSKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNK-----------------------------GAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKLRIKNIKERGNDNAMLQLGDLDDHDPYKAALDDDEGEDEESEDDADYAPDARGGSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDSDDGAHKTSKKKPGTGSAKKGATQKKVGCSPEPSSLNPCFPQRASGGHSSKPTPKKRTKKDKDAPKGAMSAFMQFSQANRAQA 470
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A836C825_9STRA (FACT complex subunit SSRP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C825_9STRA) HSP 1 Score: 362 bits (928), Expect = 7.910e-116 Identity = 187/307 (60.91%), Postives = 228/307 (74.27%), Query Frame = 1
Query: 118 DTLVAIRVTLPEKDDDTE--------------EPSP---AETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAG-VTRNFDLCVAPKSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSGN 984
D LV +R+ LP++ +D + + P AET VM+RANI DVKG VL E + S GTF PRGRY++EMYS F+RMHG++YDYKIQY DI+KLFLLEKPD+RYVAFV+SLDKP+RQGQQ+YQHLVL+ +K E T+ +NMS +LQ+KY G L M G L NLIAKIFK L+ + V+VTG + S GAK VKCA+GA+EGHLYPLNKSFIFIHKPT +IGFDE+ESVEFQRY G Q V R+FDLCV +S++GE +K Y FSGIDR+EY SLY + TK LRIKNIK SG+
Sbjct: 102 DCLVEMRLYLPDESEDDDGMEVDEDGEAIRKKDKKPRFTAETFHQAVMDRANIRDVKGSVLCELDSSLGTFLTPRGRYALEMYSTFLRMHGSKYDYKIQYEDINKLFLLEKPDDRYVAFVISLDKPVRQGQQRYQHLVLQASKVEETLNLNMSEAELQEKYKGALEPVMRGALCNLIAKIFKSLSGRAVFVTGNYRSAAGAKCVKCAMGASEGHLYPLNKSFIFIHKPTRVIGFDEVESVEFQRYSGTQDPSTVRRSFDLCVTLRSISGEPSKDYTFSGIDRSEYPSLYQWCQTKNLRIKNIKSSGD 408
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A7S2SJ65_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJ65_9STRA) HSP 1 Score: 358 bits (920), Expect = 3.350e-115 Identity = 179/331 (54.08%), Postives = 241/331 (72.81%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSGND 987
+ + + E+SQCV+PG + N++ELQ HESD + D LVAIR +P + D + P+ AE +M+ A I + G V+VEF+E++GTF PRGRY IE+Y F+RM G +YDYKI+Y+DI++LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ LVL+TTK+ + + VN+ ++L+++Y G L M G L NLIAK FK++A K V++ GKF + VKCAL ANEGHLYPL KSF+FIHKP +I FDE++SVEFQRY G QG+ TRNFDLCV S AG+ K Y+FSGIDR++YTSLY+FLS KK++IKNI++S D
Sbjct: 151 MMSMKLAEVSQCVLPGNNR-NEIELQFHESDTVEAGTDQLVAIRFYIPPDPEMDPSDRDAPTSAEVFHQRIMKNAKIKNTAGDVIVEFDENKGTFLTPRGRYLIELYDSFLRMRGNKYDYKIKYDDIARLFLLPKPDDTHMAFVIALDKPIRQGQQRYQMLVLQTTKENSEVTVNLDEKELEEEYKGELQPVMQGALCNLIAKTFKIIAKKKVFIPGKFVNAYQQSCVKCALKANEGHLYPLEKSFVFIHKPPVLIRFDEVDSVEFQRYAGGQGS--TRNFDLCVMLASSAGDPQKEYIFSGIDRSDYTSLYNFLSGKKIKIKNIQESKID 478
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A7R9VM85_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM85_9STRA) HSP 1 Score: 347 bits (890), Expect = 3.510e-114 Identity = 174/310 (56.13%), Postives = 230/310 (74.19%), Query Frame = 1
Query: 67 NDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAP-KSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSG 981
N++E+Q HESDA + D LVA+R +P D + + P+PAE Q +M+ ANI G V+VE E +GTF PRGRY+IE+Y F+RM G +YDYKI+Y+DIS+LFLL KPDE ++AFV++LDKPIRQGQQ+YQ+LV++TTKD A + VN+ E L+++YNG+L M G L NL+AK FK++A K V++ GKF++ N VKCAL A+EGHLYPL K FIFIHKPT ++ FD++ESVEFQRY G QG+ TRNFDLCV+ S A TK Y+FSGIDR++YT LY+FLS KK++IKN++ G
Sbjct: 4 NEIEMQFHESDAVEAGTDQLVAVRFYIPPDPDADPSEQDAPTPAELFQQRIMKNANIKRTTGDVIVEIPEEKGTFLTPRGRYAIELYDTFLRMRGAKYDYKIKYDDISRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQNLVMQTTKDHAELTVNLDEEVLEKEYNGDLQPVMYGALSNLVAKTFKIIAKKKVFIPGKFANANQQPCVKCALRASEGHLYPLEKQFIFIHKPTVLVRFDDVESVEFQRYAGGQGS--TRNFDLCVSLLNSGADAGTKEYIFSGIDRSDYTGLYNFLSGKKIKIKNLQGGG 311
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A7S4HR37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR37_9STRA) HSP 1 Score: 364 bits (935), Expect = 1.070e-113 Identity = 181/326 (55.52%), Postives = 243/326 (74.54%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETTKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIK 972
+ N+KEISQCV+PG + N++E+Q HESDA + D LVAIR +P D + + +PAE Q +M+ ANI G V+VE E++GTF PRGRY+IE+Y F+RM G +YDYKI+Y+DIS+LFLL KPDE ++AFV++LDKPIRQGQQ+YQ+LV++TTKD A + VN+ E L+++YNG+L M G L NL+AK FK++A K V++ GKF++ N VKCAL A+EGHLYPL K FIFIHKPT ++ FD++ESVEFQRY G QG+ TRNFDLCV+ + +TK Y+FSGIDR++YT LY+FLS KK++IKN++
Sbjct: 153 MMSANLKEISQCVLPGNNR-NEIEMQFHESDAVEAGTDQLVAIRFYIPPDPDADPSELDASTPAELFQQRIMKNANIKRTTGDVIVEIPEAKGTFLTPRGRYAIELYDTFLRMRGAKYDYKIKYDDISRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQNLVMQTTKDHAELTVNLDEEVLEKEYNGDLQPVMYGALSNLVAKTFKIIAKKKVFIPGKFANANQQPCVKCALRASEGHLYPLEKQFIFIHKPTVLVRFDDVESVEFQRYAGGQGS--TRNFDLCVSLINSGDSSTKEYIFSGIDRSDYTGLYNFLSGKKIKIKNLQ 475
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A6U3RIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RIK7_9STRA) HSP 1 Score: 364 bits (935), Expect = 1.560e-113 Identity = 182/330 (55.15%), Postives = 243/330 (73.64%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGET-TKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSG 981
+ L + E+SQCV+PG + N++ELQ HESD + D LV +R+ +P D D + +PAE LQ +M+ ANI + G V+VEF+ES+GTF PRGRY+IE+Y F+RM G +YDYKI+Y+DISKLFLL KPD+ ++AFV++LDKPIRQGQQ+YQ LV++TTK+++ + VN+ E LQ +Y G+L M G L NL+AK FKV+A K V++ GKF++ N VKCAL ANEGHLYPL K F+FIHKP ++ FDE+ESVEFQRY G QG+ TRNFDLCV + +G+T +K YVFSGIDR++YT LY+FLS KK++I N + G
Sbjct: 161 MMSLQLAEVSQCVLPGNNR-NEIELQFHESDTVEAGTDQLVGVRIYIPPDPDMDPQDNDVQTPAEILQQRIMKMANIKNTTGSVIVEFDESRGTFLTPRGRYTIELYDSFLRMRGNKYDYKIKYDDISKLFLLPKPDDVHMAFVIALDKPIRQGQQRYQMLVMQTTKEQSEVSVNLDEETLQSEYGGDLQPMMYGALSNLVAKTFKVIAKKKVFIPGKFANANQQACVKCALRANEGHLYPLEKQFVFIHKPPVLVRFDEVESVEFQRYAGGQGS--TRNFDLCVTLLNTSGDTGSKEYVFSGIDRSDYTGLYNFLSGKKIKINNFQGVG 487
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A7S1C2J2_9STRA (FACT complex subunit SSRP1 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C2J2_9STRA) HSP 1 Score: 342 bits (876), Expect = 2.250e-107 Identity = 179/356 (50.28%), Postives = 247/356 (69.38%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGET--TKPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQSGNDGSML--QLGNLDDHDPYKAALDE 1050
+ L++ E+SQCV+PG + ND+ELQ HESDA + D LV +R +P D D + P+ AE Q +M +A I + V+V+F+E++G+F PRGRY++E+Y ++RMHG +YDYKI Y DIS+LFLL + +E+ AFV++LDKPIRQGQQ+YQ+LVL+TT ++ + +N+ E L ++YNG+L ++ G L NL+AK FKV+ K V+V GKF++ G VKCAL ANEG LYPL K F+FIHKP+ ++ FDEIESVEFQRY G QG+ TRNFDLCV ++ GE+ +K YVFSGIDR +Y +LYSFLS KK+RI NI +G + + DD+D A D+
Sbjct: 147 ILSLDLTEVSQCVLPGNNR-NDIELQFHESDAGEVGTDQLVQLRFYVPPDPDADQADRDVPTAAELFQKSIMTQARIKNSSMNVIVQFDENRGSFLTPRGRYAMELYDSYLRMHGNKYDYKINYADISRLFLLPRQEEQNKAFVIALDKPIRQGQQRYQYLVLQTTTAQSEVTINLDQETLDREYNGDLQPQVRGSLCNLVAKCFKVITRKKVFVPGKFTNAYGQSFVKCALRANEGSLYPLEKQFVFIHKPSVLVRFDEIESVEFQRYAGGQGS--TRNFDLCVRLLNITGESGGSKEYVFSGIDRTDYNTLYSFLSGKKIRIANIADNGMESGQASARAAMYDDNDTRNDAGDD 499
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A1E7FQX7_9STRA (FACT complex subunit SSRP1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQX7_9STRA) HSP 1 Score: 341 bits (875), Expect = 4.770e-107 Identity = 180/330 (54.55%), Postives = 239/330 (72.42%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLP-----EKDDDTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETT--KPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQ 975
+ L++ E+SQCV+PG + N+VELQ ESDA + D LV++R+ +P + D T + S AE LQ +M+ ANI G V+VEF+ +G+F PRGRYSIE+Y RF RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ+LVL+T KD + VN+ + L+++Y +L M G L NL+AK FKV+A K V++ GKFS+ N VKCAL ANEG LYPL K FIFIHKP +I F+E+ESVEFQRY G QG+ TRNFDLCV K+ A + + YVFSGIDR++YT LY+FLSTK +RIKN+++
Sbjct: 100 MMSLDLGEVSQCVLPGNNR-NEVELQFPESDAIEANNDQLVSVRLYIPPDPEVDPSDKTAKTS-AELLQHRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEVRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKVIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFIFIHKPPVLIRFNEVESVEFQRYAGGQGS--TRNFDLCVTLKASAASISNQQEYVFSGIDRSDYTGLYNFLSTKSIRIKNLQE 425
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Match: A0A7S0TAB4_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0TAB4_9STRA) HSP 1 Score: 343 bits (880), Expect = 8.920e-107 Identity = 179/329 (54.41%), Postives = 237/329 (72.04%), Query Frame = 1
Query: 7 LFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPEKDD----DTEEPSPAETLQMLVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSIEMYSRFMRMHGTRYDYKIQYNDISKLFLLEKPDERYVAFVVSLDKPIRQGQQKYQHLVLRTTKDEATILVNMSSEDLQQKYNGNLNSEMTGPLHNLIAKIFKVLADKPVYVTGKFSSNNGAKAVKCALGANEGHLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETT--KPYVFSGIDRAEYTSLYSFLSTKKLRIKNIKQ 975
+ L++ E+SQCV+PG + N+VELQ ESDA + D LV+IR +P + D S AE LQ +M+ ANI G V+VEF+ +G+F PRGRYSIE+Y RF RM G +YDYKI+Y+DIS+LFLL KPD+ ++AFV++LDKPIRQGQQ+YQ+LVL+T KD I VN+ + L+++Y +L M G L NL+AK FKV+A K V++ GKFS+ N VKCAL ANEG LYPL K F+FIHKP +I F+E+ESVEFQRY G QG+ TRNFDLCV+ K+ A + + YVFSG+DR++YT LY+FLSTK +RIKN+++
Sbjct: 155 MMSLDLAEVSQCVLPGNNR-NEVELQFPESDAIEANNDQLVSIRFYIPPDPEVDPSDRTVKSSAELLQQRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEIRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKVIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFVFIHKPPVLIRFNEVESVEFQRYAGGQGS--TRNFDLCVSLKASAASVSNQQEYVFSGVDRSDYTGLYNFLSTKNIRIKNLQE 480 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15609.3662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15609.3662.1 >prot_H-elongata_contig15609.3662.1 ID=prot_H-elongata_contig15609.3662.1|Name=mRNA_H-elongata_contig15609.3662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=454bp RTLFDLNVKEISQCVMPGVKKSNDVELQLHESDATDQMEDTLVAIRVTLPback to top mRNA from alignment at H-elongata_contig15609:177..5153- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15609.3662.1 ID=mRNA_H-elongata_contig15609.3662.1|Name=mRNA_H-elongata_contig15609.3662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4977bp|location=Sequence derived from alignment at H-elongata_contig15609:177..5153- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15609:177..5153- >mRNA_H-elongata_contig15609.3662.1 ID=mRNA_H-elongata_contig15609.3662.1|Name=mRNA_H-elongata_contig15609.3662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2724bp|location=Sequence derived from alignment at H-elongata_contig15609:177..5153- (Himanthalia elongata Himel1 dioecious)back to top |