mRNA_H-elongata_contig156064.3661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156064.3661.1
Unique NamemRNA_H-elongata_contig156064.3661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.930e-30
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
            VA+FTTEY+LRFYS+VEATD++G+ LYSG+ GRL WA TDFYSWVDLASIVPFYVD+ V +DLPATQFIR
Sbjct:   42 VALFTTEYILRFYSIVEATDSSGRALYSGMKGRLVWAATDFYSWVDLASIVPFYVDMAVAQDLPATQFIR 111          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.210e-21
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
            VAVF+ EYVLRF+SV E    AG+  Y G+ GR+RWA+TD YSW+DL SI+PFYVD+++ +DLPATQFIR
Sbjct:   77 VAVFSVEYVLRFWSVPETPGPAGKE-YQGLCGRVRWAVTDVYSWIDLLSILPFYVDLMLPQDLPATQFIR 145          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A7S4QVR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QVR7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.360e-9
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 SMCKCIQVAVFTTEYVLRFYSV-VEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
            S+ + + + VFT +Y+LR ++  +E++       Y+G+ GRLR+  T FYS VDLAS VPFYVD+L     L ATQF+R
Sbjct:  138 SLVEVVTIFVFTVDYILRLWTADIESSK------YAGVPGRLRYVFT-FYSLVDLASTVPFYVDLLTPHISLEATQFLR 209          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A8J9X859_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X859_PHATR)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-8
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
            V VF+ EYVLR Y+  +  DA     Y+G+ GRLR+  T F+S VDLAS VPFYVDI +   DL A+ F+R
Sbjct:  125 VLVFSVEYVLRLYTA-DLEDAR----YTGLAGRLRYVPT-FFSMVDLASTVPFYVDIFLRHTDLAASSFLR 189          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: B7FUF5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUF5_PHATC)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-8
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   25 VAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVE-DLPATQFIR 234
            V VF+ EYVLR Y+  +  DA     Y+G+ GRLR+  T F+S VDLAS VPFYVDI +   DL A+ F+R
Sbjct:  125 VLVFSVEYVLRLYTA-DLEDAR----YTGLAGRLRYVPT-FFSMVDLASTVPFYVDIFLRHTDLAASSFLR 189          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A0L0D5N5_THETB (Ion transporter n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5N5_THETB)

HSP 1 Score: 57.8 bits (138), Expect = 7.790e-8
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLPATQFIR 234
            + VA+FT EY LR  ++        +  Y+G  GR +W +  F+S VDLA+I+PFYV + + +D+  TQF+R
Sbjct:   65 VSVALFTIEYGLRMVAI------GVEDKYAGWSGRAKW-MVSFFSLVDLAAIMPFYVGLAIGDDVGTTQFVR 129          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A7S1DVH9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DVH9_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-7
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVED-LPATQFIR 234
            + V++F+TEY++R Y V    DA   P      G +R+ L+ F + VDLASI+PF+VD+L  +D LPA QF+R
Sbjct:  132 VTVSLFSTEYLVRLYCVTGVHDAYSDPWV----GPIRYILSPF-AVVDLASILPFFVDLLTPQDDLPAMQFLR 199          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A812SPT4_SYMPI (KCND2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SPT4_SYMPI)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVVEDLP--ATQFIR 234
            I V +FT EYV+RF      +  AG  L      R+RW  T+F+S VDL SI+PFYVD+L+  +    ATQ++R
Sbjct:  313 ITVCIFTVEYVIRF------STQAGSCL-----ARIRWVFTNFFSIVDLVSIMPFYVDLLIPGEQKYLATQWVR 375          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A1E7ER54_9STRA (Putative ion membrane transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER54_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.520e-7
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:   25 VAVFTTEYVLRFYSVVEATDAAGQPLYSG-----IGGRLRWALTDFYSWVDLASIVPFYVDILVVED---LPATQFIR 234
            +++F+ EYVLR ++         Q LY G     I GRL++  T+FYS VDLAS VPFYVD+ +      +  T F+R
Sbjct:  130 ISIFSIEYVLRVWTA----PLENQELYGGSSAGIIVGRLKYIFTNFYSIVDLASTVPFYVDVFLFTSSNVIGTTSFLR 203          
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Match: A0A812KXJ3_9DINO (Shal protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KXJ3_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-6
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   19 IQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFYSWVDLASIVPFYVDILVV--EDLPATQFIRWV 240
            + V +FT EYVLRF      +  AG  L      R+ W  T+F+S VDL SI+PFY DIL+   ++  ATQ++R V
Sbjct:  303 VTVCIFTFEYVLRF------STRAGSCL-----ARITWVFTNFFSIVDLVSIMPFYADILIPGRQNYLATQWVRVV 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156064.3661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FN88_ECTSI6.930e-3078.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK7_9STRA1.210e-2164.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4QVR7_9STRA2.360e-945.57Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A8J9X859_PHATR1.170e-852.11Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FUF5_PHATC1.200e-852.11Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A0L0D5N5_THETB7.790e-840.28Ion transporter n=1 Tax=Thecamonas trahens ATCC 50... [more]
A0A7S1DVH9_HEMAN1.020e-745.21Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A812SPT4_SYMPI1.940e-744.59KCND2 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A1E7ER54_9STRA9.520e-741.03Putative ion membrane transporter n=1 Tax=Fragilar... [more]
A0A812KXJ3_9DINO1.310e-643.42Shal protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156064contigH-elongata_contig156064:944..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D7FN88
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG1419@2759,KOG3713@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929920.0543232-CDS-H-elongata_contig156064:943..11921622929920.0543232-CDS-H-elongata_contig156064:943..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156064 944..1192 +
1691679208.764828-CDS-H-elongata_contig156064:943..11921691679208.764828-CDS-H-elongata_contig156064:943..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156064 944..1192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156064.3661.1prot_H-elongata_contig156064.3661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156064 944..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156064.3661.1

>prot_H-elongata_contig156064.3661.1 ID=prot_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MSMCKCIQVAVFTTEYVLRFYSVVEATDAAGQPLYSGIGGRLRWALTDFY
SWVDLASIVPFYVDILVVEDLPATQFIRWVEK*
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mRNA from alignment at H-elongata_contig156064:944..1192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156064.3661.1 ID=mRNA_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig156064:944..1192+ (Himanthalia elongata Himel1 dioecious)
ATGTCTATGTGTAAATGCATACAGGTAGCCGTGTTCACGACAGAGTACGT GCTGCGGTTCTATTCCGTCGTCGAGGCTACGGACGCCGCCGGGCAGCCAC TCTACTCTGGGATTGGGGGCAGGCTTCGTTGGGCCTTGACGGACTTTTAC TCATGGGTGGACTTGGCCAGCATCGTGCCCTTCTACGTCGACATCCTGGT AGTCGAGGACCTCCCTGCTACCCAGTTTATCCGGTGGGTAGAGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156064:944..1192+

>mRNA_H-elongata_contig156064.3661.1 ID=mRNA_H-elongata_contig156064.3661.1|Name=mRNA_H-elongata_contig156064.3661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig156064:944..1192+ (Himanthalia elongata Himel1 dioecious)
ATGTCTATGTGTAAATGCATACAGGTAGCCGTGTTCACGACAGAGTACGT
GCTGCGGTTCTATTCCGTCGTCGAGGCTACGGACGCCGCCGGGCAGCCAC
TCTACTCTGGGATTGGGGGCAGGCTTCGTTGGGCCTTGACGGACTTTTAC
TCATGGGTGGACTTGGCCAGCATCGTGCCCTTCTACGTCGACATCCTGGT
AGTCGAGGACCTCCCTGCTACCCAGTTTATCCGGTGGGTAGAGAAGTGAA
TGTCTATGTGTAAATGCATACAGGTAGCCGTGTTCACGACAGAGTACGTG
CTGCGGTTCTATTCCGTCGTCGAGGCTACGGACGCCGCCGGGCAGCCACT
CTACTCTGGGATTGGGGGCAGGCTTCGTTGGGCCTTGACGGACTTTTACT
CATGGGTGGACTTGGCCAGCATCGTGCCCTTCTACGTCGACATCCTGGTA
GTCGAGGACCTCCCTGCTACCCAGTTTATCCGGTGGGTAGAGAAGTGA
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