mRNA_H-elongata_contig156050.3660.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156050.3660.1
Unique NamemRNA_H-elongata_contig156050.3660.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156050.3660.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.020e-14
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:  163 AVPCSTSTEIMVVGNTSEAESLAEALLCEGAGSFEVHWHGDVALSRPIFVSNGTSLNVTGFSIDADDADAGTAITGNHTDRLVYVDHGSSVMFTRLTFLDG 465
            A  CS + +  VV  T EA  L+EALLC GAG FEV W G+V L RPIF+SNG+ + VTG S      D G A+       L  V+ GS++    L+ + G
Sbjct:   21 AATCSVAVDARVVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASAGEAVIDGGDAVV------LFNVNDGSTLELDALSLVRG 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156050.3660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE4.020e-1443.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156050contigH-elongata_contig156050:832..1395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categorysignal anchor
Exons1
Model size566
Cds size564
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929920.001218-CDS-H-elongata_contig156050:831..13951622929920.001218-CDS-H-elongata_contig156050:831..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156050 832..1395 +
1691679208.7464168-CDS-H-elongata_contig156050:831..13951691679208.7464168-CDS-H-elongata_contig156050:831..1395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156050 832..1395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156050.3660.1prot_H-elongata_contig156050.3660.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156050 832..1395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156050.3660.1

>prot_H-elongata_contig156050.3660.1 ID=prot_H-elongata_contig156050.3660.1|Name=mRNA_H-elongata_contig156050.3660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
SNALHHNNTNNNSPPHRSLIGYKMEFPHHHQLVKGCTLQLLLLLLLLLYV
VLIDAVPCSTSTEIMVVGNTSEAESLAEALLCEGAGSFEVHWHGDVALSR
PIFVSNGTSLNVTGFSIDADDADAGTAITGNHTDRLVYVDHGSSVMFTRL
TFLDGDRALTFKGGSYAEIKDCTFLNNDGASSFYGGW*
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mRNA from alignment at H-elongata_contig156050:832..1395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156050.3660.1 ID=mRNA_H-elongata_contig156050.3660.1|Name=mRNA_H-elongata_contig156050.3660.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=564bp|location=Sequence derived from alignment at H-elongata_contig156050:832..1395+ (Himanthalia elongata Himel1 dioecious)
TCAAACGCATTACACCATAATAATACTAATAATAATAGTCCTCCACACCG
CAGTTTGATTGGGTACAAGATGGAATTTCCTCACCATCATCAGCTTGTGA
AAGGTTGTACGCTCCAGCTGCTCCTACTACTTCTGCTTCTTCTCTATGTT
GTGCTAATAGATGCGGTTCCCTGCTCTACAAGCACGGAAATCATGGTCGT
GGGTAACACGTCGGAGGCGGAGTCGCTTGCCGAAGCTCTACTTTGCGAAG
GGGCAGGAAGTTTCGAGGTCCACTGGCATGGCGATGTTGCACTATCTCGG
CCTATATTTGTGTCGAACGGTACGAGTCTGAACGTGACGGGCTTCTCGAT
AGACGCTGATGACGCTGACGCAGGAACGGCTATCACCGGCAATCACACAG
ATCGTCTAGTATACGTCGATCATGGCTCAAGCGTGATGTTCACTAGGTTA
ACATTTTTGGACGGGGACAGAGCGCTGACGTTCAAGGGGGGGTCCTACGC
GGAGATCAAGGACTGCACCTTCCTCAACAACGACGGTGCTAGTTCTTTTT
ATGGAGGTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig156050:832..1395+

>mRNA_H-elongata_contig156050.3660.1 ID=mRNA_H-elongata_contig156050.3660.1|Name=mRNA_H-elongata_contig156050.3660.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig156050:832..1395+ (Himanthalia elongata Himel1 dioecious)
TCAAACGCATTACACCATAATAATACTAATAATAATAGTCCTCCACACCG
CAGTTTGATTGGGTACAAGATGGAATTTCCTCACCATCATCAGCTTGTGA
AAGGTTGTACGCTCCAGCTGCTCCTACTACTTCTGCTTCTTCTCTATGTT
GTGCTAATAGATGCGGTTCCCTGCTCTACAAGCACGGAAATCATGGTCGT
GGGTAACACGTCGGAGGCGGAGTCGCTTGCCGAAGCTCTACTTTGCGAAG
GGGCAGGAAGTTTCGAGGTCCACTGGCATGGCGATGTTGCACTATCTCGG
CCTATATTTGTGTCGAACGGTACGAGTCTGAACGTGACGGGCTTCTCGAT
AGACGCTGATGACGCTGACGCAGGAACGGCTATCACCGGCAATCACACAG
ATCGTCTAGTATACGTCGATCATGGCTCAAGCGTGATGTTCACTAGGTTA
ACATTTTTGGACGGGGACAGAGCGCTGACGTTCAAGGGGGGGTCCTACGC
GGAGATCAAGGACTGCACCTTCCTCAACAACGACGGTGCTAGTTCTTTTT
ATGGAGGTTGGTGATCAAACGCATTACACCATAATAATACTAATAATAAT
AGTCCTCCACACCGCAGTTTGATTGGGTACAAGATGGAATTTCCTCACCA
TCATCAGCTTGTGAAAGGTTGTACGCTCCAGCTGCTCCTACTACTTCTGC
TTCTTCTCTATGTTGTGCTAATAGATGCGGTTCCCTGCTCTACAAGCACG
GAAATCATGGTCGTGGGTAACACGTCGGAGGCGGAGTCGCTTGCCGAAGC
TCTACTTTGCGAAGGGGCAGGAAGTTTCGAGGTCCACTGGCATGGCGATG
TTGCACTATCTCGGCCTATATTTGTGTCGAACGGTACGAGTCTGAACGTG
ACGGGCTTCTCGATAGACGCTGATGACGCTGACGCAGGAACGGCTATCAC
CGGCAATCACACAGATCGTCTAGTATACGTCGATCATGGCTCAAGCGTGA
TGTTCACTAGGTTAACATTTTTGGACGGGGACAGAGCGCTGACGTTCAAG
GGGGGGTCCTACGCGGAGATCAAGGACTGCACCTTCCTCAACAACGACGG
TGCTAGTTCTTTTTATGGAGGTTGGTGA
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