mRNA_H-elongata_contig155878.3653.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 132 bits (333), Expect = 6.240e-35 Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
FGTFNV T A +G N IGH + ++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE I ++ +ECIS RL+K R+ I ++ VTF+V YA TE +T G N + AL++ I V +R+++ +L ANARTG+
Sbjct: 11 FGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.710e-34 Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEG----EKANYIAALNSIISSVPAREYVFILNDANARTGK 480
FGTFNVRT A +G N IGH + ++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECI RL+K R+ I ++ +TF+V YA TE T G K ++ AL+++I V + +++ +L DANARTG+
Sbjct: 150 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGR 317
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.700e-33 Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
FGTFNVRT A +G N IGH + ++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +EC S RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 822 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 989
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 132 bits (332), Expect = 9.190e-33 Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
FGTFNV T A +G N IGH + ++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECIS RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 659 FGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.620e-32 Identity = 75/166 (45.18%), Postives = 105/166 (63.25%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYA-----TTEEATEGEKANYIAALNSIISSVPAREYVFILNDANARTG 477
FGTFNVRT A +G N IGH + ++++ C GCDVIG QET+R+G I GY V +SG G K++RG HGVG+AIKE + + A ++ +ECIS RL+K R+ I ++ VTF+V YA TT K + AL++ I V +R+++ +L DANA TG
Sbjct: 125 FGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTG 290
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.450e-31 Identity = 74/166 (44.58%), Postives = 104/166 (62.65%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANART 474
FG FNVRT A +G IGH + ++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECIS RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANART
Sbjct: 61 FGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANART 226
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 2.370e-30 Identity = 73/168 (43.45%), Postives = 105/168 (62.50%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTEEA--TEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
FGTF+VRT +G N IGH + +++ A GCDVIG QET+R+G I GY + +SG G K++RG+ GVG+AIKE + ++ +ECIS RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 157 FGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 324
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 125 bits (314), Expect = 2.470e-30 Identity = 74/168 (44.05%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISIKSNF-VTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
FGTFNVRT A +G N IGH + ++++ A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECIS RL+K R+ I V +V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 135 FGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 302
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.180e-27 Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 64 SLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECIS RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.380e-26 Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 64 SLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
++++ C A GCDVIG QET+R+G I GY + +SG G K++RG HGVG+AIKE + ++ +ECIS RL+K R+ I ++ VTF+V YA TE T G N + AL++ I V +R+++ +L DANARTG+
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155878.3653.1 >prot_H-elongata_contig155878.3653.1 ID=prot_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp FGTFNVRTAAVNGVNGIGHIDSLLRPCDARGCDVIGQQETKRDGHCEITAback to top mRNA from alignment at H-elongata_contig155878:752..1231- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155878.3653.1 ID=mRNA_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig155878:752..1231- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155878:752..1231- >mRNA_H-elongata_contig155878.3653.1 ID=mRNA_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig155878:752..1231- (Himanthalia elongata Himel1 dioecious)back to top |