mRNA_H-elongata_contig155878.3653.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155878.3653.1
Unique NamemRNA_H-elongata_contig155878.3653.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 6.240e-35
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTFNV T A +G N IGH + ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE I     ++   +ECIS RL+K R+ I ++  VTF+V YA TE   +T G   N    +  AL++ I  V +R+++ +L  ANARTG+
Sbjct:   11 FGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGR 178          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.710e-34
Identity = 74/168 (44.05%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEG----EKANYIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTFNVRT A +G N IGH + ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECI  RL+K R+ I ++  +TF+V YA TE    T G     K ++  AL+++I  V + +++ +L DANARTG+
Sbjct:  150 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGR 317          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.700e-33
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTFNVRT A +G N IGH + ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +EC S RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:  822 FGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 989          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 9.190e-33
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTFNV T A +G N IGH + ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECIS RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:  659 FGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 826          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.620e-32
Identity = 75/166 (45.18%), Postives = 105/166 (63.25%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYA-----TTEEATEGEKANYIAALNSIISSVPAREYVFILNDANARTG 477
            FGTFNVRT A +G N IGH + ++++ C   GCDVIG QET+R+G   I   GY V +SG   G K++RG HGVG+AIKE + + A ++   +ECIS RL+K R+ I ++  VTF+V YA     TT       K +   AL++ I  V +R+++ +L DANA TG
Sbjct:  125 FGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTG 290          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.450e-31
Identity = 74/166 (44.58%), Postives = 104/166 (62.65%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANART 474
            FG FNVRT A +G   IGH + ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECIS RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANART
Sbjct:   61 FGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANART 226          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.370e-30
Identity = 73/168 (43.45%), Postives = 105/168 (62.50%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTEEA--TEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTF+VRT   +G N IGH +  +++   A GCDVIG QET+R+G   I   GY + +SG   G K++RG+ GVG+AIKE +     ++   +ECIS RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:  157 FGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 324          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.470e-30
Identity = 74/168 (44.05%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 FGTFNVRTAAVNGVNGIGH-IDSLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISIKSNF-VTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            FGTFNVRT A +G N IGH + ++++   A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECIS RL+K R+ I     V  +V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:  135 FGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 302          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.180e-27
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   64 SLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECIS RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147          
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.380e-26
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   64 SLLRPCDARGCDVIGQQETKRDGHCEITASGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLLKARISI-KSNFVTFLVAYATTE--EATEGEKAN----YIAALNSIISSVPAREYVFILNDANARTGK 480
            ++++ C A GCDVIG QET+R+G   I   GY + +SG   G K++RG HGVG+AIKE +     ++   +ECIS RL+K R+ I ++  VTF+V YA TE    T G   N    +  AL++ I  V +R+++ +L DANARTG+
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155878.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZE6_9PHAE6.240e-3545.24Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L660_9PHAE2.710e-3444.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0W6_9PHAE2.700e-3345.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1H7_9PHAE9.190e-3345.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU4_9PHAE1.620e-3245.18Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JGX2_9PHAE1.450e-3144.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE2.370e-3043.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5A7_9PHAE2.470e-3044.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE1.180e-2743.15Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE1.380e-2643.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155878contigH-elongata_contig155878:752..1231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.2
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog28377.ENSACAP00000018341
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,48DAM@7711,499S2@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929919.2954078-CDS-H-elongata_contig155878:751..12311622929919.2954078-CDS-H-elongata_contig155878:751..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155878 752..1231 -
1691679208.3720047-CDS-H-elongata_contig155878:751..12311691679208.3720047-CDS-H-elongata_contig155878:751..1231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155878 752..1231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155878.3653.1prot_H-elongata_contig155878.3653.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155878 752..1231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155878.3653.1

>prot_H-elongata_contig155878.3653.1 ID=prot_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
FGTFNVRTAAVNGVNGIGHIDSLLRPCDARGCDVIGQQETKRDGHCEITA
SGYRVYFSGDCTGVKEERGQHGVGLAIKEEIVNKASKDDIAIECISARLL
KARISIKSNFVTFLVAYATTEEATEGEKANYIAALNSIISSVPAREYVFI
LNDANARTGK
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mRNA from alignment at H-elongata_contig155878:752..1231-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155878.3653.1 ID=mRNA_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig155878:752..1231- (Himanthalia elongata Himel1 dioecious)
TTCGGCACGTTCAACGTTCGCACAGCAGCGGTTAACGGCGTCAACGGCAT TGGTCATATCGACTCCCTCTTGAGGCCCTGTGATGCGAGAGGGTGTGATG TTATTGGACAGCAGGAGACAAAACGGGACGGACATTGTGAAATAACTGCA TCTGGATACCGGGTCTATTTCAGTGGTGACTGCACCGGAGTCAAAGAGGA AAGGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAATA AGGCCAGCAAGGATGACATCGCAATCGAGTGCATCAGCGCACGTCTCCTG AAGGCTCGAATATCGATTAAATCTAATTTTGTTACGTTTCTAGTAGCCTA CGCAACGACCGAAGAAGCGACGGAGGGGGAGAAGGCCAATTATATCGCAG CCCTCAACAGCATCATATCATCAGTGCCCGCTCGGGAATACGTCTTCATT TTAAACGACGCAAATGCCAGGACAGGGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig155878:752..1231-

>mRNA_H-elongata_contig155878.3653.1 ID=mRNA_H-elongata_contig155878.3653.1|Name=mRNA_H-elongata_contig155878.3653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig155878:752..1231- (Himanthalia elongata Himel1 dioecious)
TTCGGCACGTTCAACGTTCGCACAGCAGCGGTTAACGGCGTCAACGGCAT
TGGTCATATCGACTCCCTCTTGAGGCCCTGTGATGCGAGAGGGTGTGATG
TTATTGGACAGCAGGAGACAAAACGGGACGGACATTGTGAAATAACTGCA
TCTGGATACCGGGTCTATTTCAGTGGTGACTGCACCGGAGTCAAAGAGGA
AAGGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAATA
AGGCCAGCAAGGATGACATCGCAATCGAGTGCATCAGCGCACGTCTCCTG
AAGGCTCGAATATCGATTAAATCTAATTTTGTTACGTTTCTAGTAGCCTA
CGCAACGACCGAAGAAGCGACGGAGGGGGAGAAGGCCAATTATATCGCAG
CCCTCAACAGCATCATATCATCAGTGCCCGCTCGGGAATACGTCTTCATT
TTAAACGACGCAAATGCCAGGACAGGGAAATTCGGCACGTTCAACGTTCG
CACAGCAGCGGTTAACGGCGTCAACGGCATTGGTCATATCGACTCCCTCT
TGAGGCCCTGTGATGCGAGAGGGTGTGATGTTATTGGACAGCAGGAGACA
AAACGGGACGGACATTGTGAAATAACTGCATCTGGATACCGGGTCTATTT
CAGTGGTGACTGCACCGGAGTCAAAGAGGAAAGGGGGCAACATGGGGTGG
GACTAGCGATAAAGGAGGAGATCGTTAATAAGGCCAGCAAGGATGACATC
GCAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCTCGAATATCGATTAA
ATCTAATTTTGTTACGTTTCTAGTAGCCTACGCAACGACCGAAGAAGCGA
CGGAGGGGGAGAAGGCCAATTATATCGCAGCCCTCAACAGCATCATATCA
TCAGTGCCCGCTCGGGAATACGTCTTCATTTTAAACGACGCAAATGCCAG
GACAGGGAAA
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